Wall clock time and date at job start Tue Mar 31 2020 13:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.47003 * 2 1 4 4 C 1.40361 * 126.64557 * 264.97863 * 3 2 1 5 5 C 1.35129 * 107.11138 * 180.02562 * 4 3 2 6 6 O 1.33935 * 108.76971 * 359.75732 * 5 4 3 7 7 C 1.34913 * 109.38063 * 0.39944 * 6 5 4 8 8 C 1.46656 * 125.98666 * 179.86175 * 7 6 5 9 9 O 1.21693 * 120.00130 * 171.65816 * 8 7 6 10 10 N 1.34780 * 119.99776 * 351.66092 * 8 7 6 11 11 C 1.46068 * 120.17054 * 173.08912 * 10 8 7 12 12 C 1.53422 * 110.10564 * 293.08593 * 11 10 8 13 13 C 1.53430 * 108.49301 * 316.33769 * 12 11 10 14 14 C 1.53118 * 109.32871 * 287.67811 * 13 12 11 15 15 C 1.52458 * 109.67876 * 77.06245 * 14 13 12 16 16 C 1.53489 * 109.14562 * 43.93743 * 15 14 13 17 17 H 1.09001 * 109.67792 * 5.51118 * 16 15 14 18 18 N 1.46496 * 109.67694 * 126.01413 * 16 15 14 19 19 C 1.36933 * 120.00259 * 204.99840 * 18 16 15 20 20 H 1.07994 * 119.99622 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00228 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00398 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99949 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46755 * 90.00524 * 23 21 19 25 25 H 1.48504 * 109.47097 * 210.00179 * 23 21 19 26 26 H 1.48495 * 109.46943 * 330.00309 * 23 21 19 27 27 C 1.47130 * 120.17239 * 353.11142 * 10 8 7 28 28 H 1.08994 * 109.47048 * 59.99785 * 1 2 3 29 29 H 1.09001 * 109.46596 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46800 * 299.99613 * 1 2 3 31 31 H 1.09006 * 109.46800 * 240.00387 * 2 1 3 32 32 H 1.08997 * 109.47487 * 119.99948 * 2 1 3 33 33 H 1.07993 * 126.44475 * 0.02562 * 4 3 2 34 34 H 1.08000 * 125.61875 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.36502 * 53.27523 * 11 10 8 36 36 H 1.08998 * 109.36607 * 172.88552 * 11 10 8 37 37 H 1.08997 * 109.63735 * 76.04310 * 12 11 10 38 38 H 1.09002 * 109.62813 * 196.64214 * 12 11 10 39 39 H 1.08993 * 109.49462 * 47.64155 * 13 12 11 40 40 H 1.09002 * 109.49365 * 167.69538 * 13 12 11 41 41 H 1.08997 * 109.44005 * 316.99809 * 14 13 12 42 42 H 1.09000 * 109.43669 * 197.12746 * 14 13 12 43 43 H 1.08997 * 109.52416 * 284.03120 * 15 14 13 44 44 H 1.09002 * 109.51935 * 163.83366 * 15 14 13 45 45 H 0.97010 * 119.99830 * 24.99544 * 18 16 15 46 46 H 0.96998 * 120.00392 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.84802 * 348.31400 * 27 10 8 48 48 H 1.09003 * 109.90000 * 227.35555 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4045 2.1779 -1.1219 5 6 2.7923 3.3916 -0.6717 6 8 2.6711 3.4155 0.6619 7 6 2.2141 2.2210 1.0914 8 6 1.9525 1.8491 2.4857 9 8 1.3987 0.7960 2.7409 10 7 2.3253 2.6738 3.4844 11 6 1.9349 2.3824 4.8615 12 6 0.4145 2.5153 5.0180 13 6 -0.0409 3.7848 4.2864 14 6 0.4061 5.0153 5.0805 15 6 1.8942 5.2585 4.8558 16 6 2.2115 5.0941 3.3631 17 1 1.2872 4.9402 2.8062 18 7 2.8914 6.2937 2.8682 19 6 2.8236 6.6205 1.5402 20 1 2.2693 5.9936 0.8575 21 6 3.4683 7.7568 1.0713 22 7 3.4028 8.0712 -0.2051 23 14 4.4278 8.8407 2.2520 24 1 5.8355 8.3728 2.3207 25 1 4.3960 10.2455 1.7715 26 1 3.8146 8.7654 3.6024 27 6 3.1273 3.8725 3.1932 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.3847 1.8517 -2.1512 34 1 3.1384 4.2093 -1.2865 35 1 2.2369 1.3663 5.1155 36 1 2.4302 3.0833 5.5335 37 1 -0.0761 1.6452 4.5817 38 1 0.1605 2.5909 6.0753 39 1 0.4052 3.8115 3.2923 40 1 -1.1273 3.7835 4.1977 41 1 0.2220 4.8487 6.1418 42 1 -0.1582 5.8864 4.7475 43 1 2.4725 4.5370 5.4328 44 1 2.1501 6.2694 5.1734 45 1 3.3896 6.8566 3.4815 46 1 3.8530 8.8655 -0.5328 47 1 3.5000 3.8287 2.1698 48 1 3.9638 3.9373 3.8891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088375708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:44 Heat of formation + Delta-G solvation = 10.116155 kcal Electronic energy + Delta-G solvation = -29632.077549 eV Core-core repulsion = 25882.859109 eV Total energy + Delta-G solvation = -3749.218440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40147 -40.06340 -37.73446 -34.94606 -34.69082 -33.85542 -32.12307 -31.07690 -30.20302 -29.22052 -27.18160 -26.70320 -24.32334 -23.52206 -22.55264 -21.62459 -21.43089 -20.44909 -19.58679 -18.62907 -17.59396 -16.95882 -16.23434 -15.87626 -15.74765 -15.43161 -15.16845 -14.48620 -14.25082 -14.11220 -13.79835 -13.70360 -13.42092 -13.07093 -12.80383 -12.64343 -12.50273 -12.43152 -12.14377 -12.10573 -11.83410 -11.68923 -11.22376 -11.19109 -11.02104 -10.96550 -10.79079 -10.75168 -10.48425 -10.27139 -10.03677 -9.67920 -9.61124 -9.55827 -9.35094 -9.15049 -8.51226 -8.14966 -7.27504 -5.81494 -3.16288 1.43074 2.70034 2.99759 3.33281 3.36525 3.40629 3.42970 3.53585 4.55349 4.71919 4.96804 5.00681 5.06023 5.12520 5.13853 5.19831 5.29718 5.48215 5.51787 5.53801 5.58499 5.60711 5.64635 5.70042 5.74635 5.84614 5.90925 5.94161 6.00036 6.04321 6.09009 6.11974 6.16315 6.21957 6.32678 6.37251 6.41504 6.48311 6.52821 6.58291 6.63483 6.69389 6.90217 6.95198 7.28380 7.63218 7.98288 8.33431 8.38696 9.16461 9.89130 10.08200 11.36656 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.006033 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.666007 B = 4639.958675 C = 6459.484472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.090 4.090 4 C -0.242 4.242 5 C 0.019 3.981 6 O -0.129 6.129 7 C -0.094 4.094 8 C 0.603 3.397 9 O -0.530 6.530 10 N -0.596 5.596 11 C 0.112 3.888 12 C -0.133 4.133 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.141 4.141 16 C 0.167 3.833 17 H 0.072 0.928 18 N -0.742 5.742 19 C -0.237 4.237 20 H 0.094 0.906 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.880 3.120 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.072 3.928 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.210 0.790 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.111 0.889 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -12.734 6.030 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.093 4.093 3 C -0.093 4.093 4 C -0.261 4.261 5 C -0.052 4.052 6 O -0.024 6.024 7 C -0.146 4.146 8 C 0.392 3.608 9 O -0.409 6.409 10 N -0.328 5.328 11 C -0.010 4.010 12 C -0.171 4.171 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.179 4.179 16 C 0.057 3.943 17 H 0.090 0.910 18 N -0.385 5.385 19 C -0.367 4.367 20 H 0.112 0.888 21 C -0.190 4.190 22 N -0.582 5.582 23 Si 0.711 3.289 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.052 4.052 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.227 0.773 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.504 -13.002 6.162 14.809 hybrid contribution 0.884 1.110 0.453 1.490 sum -2.621 -11.892 6.615 13.857 Atomic orbital electron populations 1.21624 0.94656 1.01229 1.02052 1.20016 0.96176 0.90574 1.02517 1.20504 1.00176 0.97337 0.91306 1.21633 1.09842 0.94889 0.99767 1.24697 0.99421 0.99303 0.81746 1.84520 1.63461 1.32109 1.22264 1.21790 1.11889 0.86218 0.94700 1.16684 0.78734 0.83360 0.82016 1.90778 1.44004 1.23184 1.82929 1.47963 1.52782 1.25351 1.06704 1.21646 0.95830 1.01202 0.82355 1.22087 0.95765 0.98835 1.00456 1.21988 1.00153 0.93890 1.01044 1.21460 0.96313 0.97956 0.99227 1.22314 0.96354 1.01556 0.97625 1.21051 0.94850 0.86060 0.92379 0.91007 1.42897 1.62234 1.25740 1.07590 1.19110 1.27140 1.07030 0.83437 0.88787 1.24632 1.00577 0.98189 0.95605 1.69669 1.48280 1.27848 1.12376 0.86621 0.80507 0.80833 0.80966 1.21210 1.21895 1.20414 1.23471 0.94152 0.84024 1.03595 0.93190 0.92802 0.92038 0.91613 0.90020 0.83314 0.77321 0.91651 0.89211 0.91157 0.91300 0.89945 0.92739 0.92577 0.92088 0.91712 0.91718 0.80604 0.93141 0.87175 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.84 37.16 0.37 -1.41 16 2 C -0.06 -0.75 5.66 -27.88 -0.16 -0.91 16 3 C -0.09 -1.42 5.45 -104.43 -0.57 -1.99 16 4 C -0.24 -3.55 10.83 -39.89 -0.43 -3.98 16 5 C 0.02 0.31 12.08 29.63 0.36 0.67 16 6 O -0.13 -2.38 6.85 4.99 0.03 -2.34 16 7 C -0.09 -1.63 6.72 -36.80 -0.25 -1.88 16 8 C 0.60 10.24 6.76 -12.86 -0.09 10.16 16 9 O -0.53 -9.37 13.45 5.19 0.07 -9.30 16 10 N -0.60 -9.17 1.72 -174.43 -0.30 -9.47 16 11 C 0.11 1.44 5.11 -4.06 -0.02 1.42 16 12 C -0.13 -1.66 5.56 -26.29 -0.15 -1.80 16 13 C -0.13 -1.86 5.44 -26.45 -0.14 -2.00 16 14 C -0.11 -1.50 5.67 -26.95 -0.15 -1.66 16 15 C -0.14 -2.07 5.24 -26.75 -0.14 -2.21 16 16 C 0.17 3.00 2.40 -67.35 -0.16 2.84 16 17 H 0.07 1.44 5.39 -51.93 -0.28 1.16 16 18 N -0.74 -16.21 4.89 -52.87 -0.26 -16.47 16 19 C -0.24 -6.14 10.43 -15.06 -0.16 -6.30 16 20 H 0.09 2.60 7.62 -52.49 -0.40 2.20 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -27.49 13.97 55.49 0.78 -26.71 16 23 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 27 C 0.07 1.20 5.10 -3.37 -0.02 1.18 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.19 6.93 -51.93 -0.36 0.83 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.21 3.19 8.06 -52.49 -0.42 2.76 16 35 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 36 H 0.09 1.03 5.07 -51.93 -0.26 0.76 16 37 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 38 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 39 H 0.08 1.37 3.68 -51.93 -0.19 1.18 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.64 7.85 -51.93 -0.41 0.24 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.83 4.49 -51.93 -0.23 0.60 16 44 H 0.06 1.00 7.61 -51.93 -0.40 0.60 16 45 H 0.36 7.81 5.38 -40.82 -0.22 7.59 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.11 2.09 4.48 -52.30 -0.23 1.86 16 48 H 0.07 1.03 7.97 -51.93 -0.41 0.61 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -29.55 359.65 -7.91 -37.46 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.13 Total: 12.86 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.81 Total: -7.82 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.22 Total: -52.65 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.10 Total: -11.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.55 -7.91 -37.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088375708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.575 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds