Wall clock time and date at job start Tue Mar 31 2020 13:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.47003 * 2 1 4 4 C 1.40361 * 126.64557 * 264.97863 * 3 2 1 5 5 C 1.35129 * 107.11138 * 180.02562 * 4 3 2 6 6 O 1.33935 * 108.76971 * 359.75732 * 5 4 3 7 7 C 1.34913 * 109.38063 * 0.39944 * 6 5 4 8 8 C 1.46656 * 125.98666 * 179.86175 * 7 6 5 9 9 O 1.21693 * 120.00130 * 171.65816 * 8 7 6 10 10 N 1.34780 * 119.99776 * 351.66092 * 8 7 6 11 11 C 1.46068 * 120.17054 * 173.08912 * 10 8 7 12 12 C 1.53422 * 110.10564 * 293.08593 * 11 10 8 13 13 C 1.53430 * 108.49301 * 316.33769 * 12 11 10 14 14 C 1.53118 * 109.32871 * 287.67811 * 13 12 11 15 15 C 1.52458 * 109.67876 * 77.06245 * 14 13 12 16 16 C 1.53489 * 109.14562 * 43.93743 * 15 14 13 17 17 H 1.09001 * 109.67792 * 5.51118 * 16 15 14 18 18 N 1.46496 * 109.67694 * 126.01413 * 16 15 14 19 19 C 1.36933 * 120.00259 * 204.99840 * 18 16 15 20 20 H 1.07994 * 119.99622 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00228 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00398 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99949 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46755 * 90.00524 * 23 21 19 25 25 H 1.48504 * 109.47097 * 210.00179 * 23 21 19 26 26 H 1.48495 * 109.46943 * 330.00309 * 23 21 19 27 27 C 1.47130 * 120.17239 * 353.11142 * 10 8 7 28 28 H 1.08994 * 109.47048 * 59.99785 * 1 2 3 29 29 H 1.09001 * 109.46596 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46800 * 299.99613 * 1 2 3 31 31 H 1.09006 * 109.46800 * 240.00387 * 2 1 3 32 32 H 1.08997 * 109.47487 * 119.99948 * 2 1 3 33 33 H 1.07993 * 126.44475 * 0.02562 * 4 3 2 34 34 H 1.08000 * 125.61875 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.36502 * 53.27523 * 11 10 8 36 36 H 1.08998 * 109.36607 * 172.88552 * 11 10 8 37 37 H 1.08997 * 109.63735 * 76.04310 * 12 11 10 38 38 H 1.09002 * 109.62813 * 196.64214 * 12 11 10 39 39 H 1.08993 * 109.49462 * 47.64155 * 13 12 11 40 40 H 1.09002 * 109.49365 * 167.69538 * 13 12 11 41 41 H 1.08997 * 109.44005 * 316.99809 * 14 13 12 42 42 H 1.09000 * 109.43669 * 197.12746 * 14 13 12 43 43 H 1.08997 * 109.52416 * 284.03120 * 15 14 13 44 44 H 1.09002 * 109.51935 * 163.83366 * 15 14 13 45 45 H 0.97010 * 119.99830 * 24.99544 * 18 16 15 46 46 H 0.96998 * 120.00392 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.84802 * 348.31400 * 27 10 8 48 48 H 1.09003 * 109.90000 * 227.35555 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4045 2.1779 -1.1219 5 6 2.7923 3.3916 -0.6717 6 8 2.6711 3.4155 0.6619 7 6 2.2141 2.2210 1.0914 8 6 1.9525 1.8491 2.4857 9 8 1.3987 0.7960 2.7409 10 7 2.3253 2.6738 3.4844 11 6 1.9349 2.3824 4.8615 12 6 0.4145 2.5153 5.0180 13 6 -0.0409 3.7848 4.2864 14 6 0.4061 5.0153 5.0805 15 6 1.8942 5.2585 4.8558 16 6 2.2115 5.0941 3.3631 17 1 1.2872 4.9402 2.8062 18 7 2.8914 6.2937 2.8682 19 6 2.8236 6.6205 1.5402 20 1 2.2693 5.9936 0.8575 21 6 3.4683 7.7568 1.0713 22 7 3.4028 8.0712 -0.2051 23 14 4.4278 8.8407 2.2520 24 1 5.8355 8.3728 2.3207 25 1 4.3960 10.2455 1.7715 26 1 3.8146 8.7654 3.6024 27 6 3.1273 3.8725 3.1932 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.3847 1.8517 -2.1512 34 1 3.1384 4.2093 -1.2865 35 1 2.2369 1.3663 5.1155 36 1 2.4302 3.0833 5.5335 37 1 -0.0761 1.6452 4.5817 38 1 0.1605 2.5909 6.0753 39 1 0.4052 3.8115 3.2923 40 1 -1.1273 3.7835 4.1977 41 1 0.2220 4.8487 6.1418 42 1 -0.1582 5.8864 4.7475 43 1 2.4725 4.5370 5.4328 44 1 2.1501 6.2694 5.1734 45 1 3.3896 6.8566 3.4815 46 1 3.8530 8.8655 -0.5328 47 1 3.5000 3.8287 2.1698 48 1 3.9638 3.9373 3.8891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088375708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:43 Heat of formation + Delta-G solvation = -5.996049 kcal Electronic energy + Delta-G solvation = -29632.776227 eV Core-core repulsion = 25882.859109 eV Total energy + Delta-G solvation = -3749.917118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.69166 -41.32203 -39.06842 -36.43128 -36.00399 -35.07900 -33.88065 -32.30705 -31.74433 -30.52747 -28.47877 -27.92167 -25.80417 -24.90617 -23.89536 -22.97520 -22.71460 -21.72127 -20.86482 -19.91915 -19.43750 -18.28591 -17.54207 -17.17443 -17.07592 -16.76975 -16.35456 -16.12352 -15.71602 -15.32835 -15.22891 -14.91323 -14.73406 -14.57504 -14.14455 -14.05245 -13.79228 -13.72842 -13.44446 -13.25373 -13.06920 -12.97019 -12.90339 -12.53843 -12.32068 -12.25801 -12.14877 -12.01180 -11.87965 -11.71592 -11.60567 -11.28202 -11.01891 -10.92365 -10.74857 -10.59224 -9.92316 -9.49927 -9.08104 -7.92418 -5.24585 0.12290 1.42301 1.43793 1.45577 1.51089 1.76086 2.12268 2.24198 2.55278 3.39102 3.47523 3.76982 3.80679 3.85458 3.90101 3.99919 4.07392 4.11000 4.27542 4.36239 4.40540 4.43106 4.49154 4.55014 4.62226 4.62712 4.71220 4.77501 4.83603 4.89180 4.96492 5.00833 5.06548 5.10872 5.19873 5.22430 5.29948 5.33578 5.35069 5.39654 5.44602 5.51716 5.60852 5.69368 5.93236 6.01345 6.28711 6.34911 7.05049 7.17398 7.92315 8.11735 9.28378 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.006033 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.666007 B = 4639.958675 C = 6459.484472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.093 4.093 4 C -0.226 4.226 5 C -0.005 4.005 6 O -0.152 6.152 7 C -0.120 4.120 8 C 0.599 3.401 9 O -0.541 6.541 10 N -0.590 5.590 11 C 0.106 3.894 12 C -0.124 4.124 13 C -0.132 4.132 14 C -0.106 4.106 15 C -0.134 4.134 16 C 0.167 3.833 17 H 0.047 0.953 18 N -0.745 5.745 19 C -0.211 4.211 20 H 0.064 0.936 21 C -0.060 4.060 22 N -0.981 5.981 23 Si 0.943 3.057 24 H -0.282 1.282 25 H -0.305 1.305 26 H -0.253 1.253 27 C 0.080 3.920 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.180 0.820 34 H 0.210 0.790 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.365 0.635 46 H 0.253 0.747 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -13.909 8.489 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.096 4.096 4 C -0.245 4.245 5 C -0.075 4.075 6 O -0.047 6.047 7 C -0.171 4.171 8 C 0.388 3.612 9 O -0.421 6.421 10 N -0.321 5.321 11 C -0.015 4.015 12 C -0.162 4.162 13 C -0.170 4.170 14 C -0.143 4.143 15 C -0.172 4.172 16 C 0.058 3.942 17 H 0.065 0.935 18 N -0.388 5.388 19 C -0.342 4.342 20 H 0.082 0.918 21 C -0.252 4.252 22 N -0.632 5.632 23 Si 0.772 3.228 24 H -0.209 1.209 25 H -0.232 1.232 26 H -0.177 1.177 27 C -0.044 4.044 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.197 0.803 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.199 0.801 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.445 -14.218 8.685 17.013 hybrid contribution 0.768 1.368 -0.360 1.609 sum -2.677 -12.851 8.324 15.543 Atomic orbital electron populations 1.21579 0.94095 1.02343 1.01023 1.20082 0.96539 0.89163 1.03240 1.20927 0.99310 0.98311 0.91064 1.21943 1.07932 0.93694 1.00936 1.24931 1.00702 1.00394 0.81522 1.84500 1.64165 1.32900 1.23110 1.22140 1.12940 0.86396 0.95654 1.16749 0.78728 0.83498 0.82247 1.90759 1.44637 1.23625 1.83113 1.47917 1.52236 1.24365 1.07589 1.21908 0.96340 1.02278 0.80982 1.22040 0.95139 0.97115 1.01935 1.21926 1.00119 0.95197 0.99759 1.21428 0.95017 0.96955 1.00937 1.22268 0.97698 1.02342 0.94865 1.21159 0.93610 0.84985 0.94440 0.93490 1.42899 1.62659 1.27214 1.06016 1.19026 1.24751 1.05626 0.84834 0.91773 1.25322 1.02637 1.00102 0.97100 1.69844 1.50312 1.28528 1.14506 0.85587 0.79227 0.78026 0.79984 1.20860 1.23214 1.17738 1.23179 0.94319 0.84010 1.02909 0.92660 0.90619 0.94556 0.88994 0.91094 0.80267 0.77372 0.90968 0.86996 0.92790 0.88086 0.93139 0.92581 0.89317 0.93506 0.89048 0.91812 0.80100 0.93801 0.89605 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.84 71.98 0.71 -2.58 16 2 C -0.05 -1.38 5.66 29.85 0.17 -1.21 16 3 C -0.09 -2.92 5.45 -19.74 -0.11 -3.03 16 4 C -0.23 -6.60 10.83 22.07 0.24 -6.36 16 5 C -0.01 -0.19 12.08 67.10 0.81 0.62 16 6 O -0.15 -5.86 6.85 -5.07 -0.03 -5.90 16 7 C -0.12 -4.28 6.72 24.07 0.16 -4.11 16 8 C 0.60 20.50 6.76 86.44 0.58 21.08 16 9 O -0.54 -19.12 13.45 -4.33 -0.06 -19.18 16 10 N -0.59 -17.67 1.72 -823.98 -1.42 -19.09 16 11 C 0.11 2.44 5.11 86.60 0.44 2.89 16 12 C -0.12 -2.78 5.56 30.88 0.17 -2.60 16 13 C -0.13 -3.51 5.44 30.78 0.17 -3.35 16 14 C -0.11 -2.56 5.67 30.45 0.17 -2.39 16 15 C -0.13 -3.58 5.24 30.58 0.16 -3.42 16 16 C 0.17 5.91 2.40 45.37 0.11 6.02 16 17 H 0.05 1.94 5.39 -2.39 -0.01 1.93 16 18 N -0.74 -32.24 4.89 -321.18 -1.57 -33.82 16 19 C -0.21 -11.21 10.43 84.03 0.88 -10.34 16 20 H 0.06 3.76 7.62 -2.91 -0.02 3.73 16 21 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 22 N -0.98 -59.88 13.97 21.65 0.30 -59.58 16 23 Si 0.94 43.70 27.74 68.60 1.90 45.60 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 26 H -0.25 -10.51 6.52 99.48 0.65 -9.86 16 27 C 0.08 2.64 5.10 86.47 0.44 3.08 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.07 7.53 -2.38 -0.02 1.05 16 31 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 2.02 6.93 -2.39 -0.02 2.00 16 33 H 0.18 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.21 6.89 8.06 -2.91 -0.02 6.87 16 35 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 36 H 0.11 2.07 5.07 -2.39 -0.01 2.06 16 37 H 0.05 1.40 7.44 -2.39 -0.02 1.39 16 38 H 0.10 1.65 7.89 -2.39 -0.02 1.63 16 39 H 0.05 1.69 3.68 -2.39 -0.01 1.68 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.62 7.85 -2.39 -0.02 1.60 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.96 4.49 -2.39 -0.01 1.95 16 44 H 0.06 1.76 7.61 -2.39 -0.02 1.74 16 45 H 0.37 15.14 5.38 -92.70 -0.50 14.64 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.09 3.35 4.48 -8.23 -0.04 3.31 16 48 H 0.09 2.49 7.97 -2.39 -0.02 2.47 16 Total: -1.00 -66.49 359.65 5.09 -61.40 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.40 Total: 39.18 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.57 Total: -8.62 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -2.69 Total: -112.48 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.09 Total: -25.08 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.90 Total: 45.60 kcal Total: -66.49 5.09 -61.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088375708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.404 kcal (2) G-P(sol) polarization free energy of solvation -66.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds