Wall clock time and date at job start Tue Mar 31 2020 12:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 111.75073 * 2 1 4 4 C 1.57018 * 112.09051 * 233.12203 * 2 1 3 5 5 H 1.09001 * 116.40661 * 64.51330 * 4 2 1 6 6 C 1.55976 * 100.60357 * 298.19695 * 4 2 1 7 7 C 1.55793 * 103.90972 * 324.69258 * 6 4 2 8 8 C 1.55924 * 104.68071 * 1.32283 * 7 6 4 9 9 C 1.50708 * 115.84462 * 159.29180 * 8 7 6 10 10 O 1.21285 * 119.99836 * 242.12085 * 9 8 7 11 11 N 1.34774 * 120.00004 * 62.13002 * 9 8 7 12 12 C 1.46960 * 120.59535 * 179.97438 * 11 9 8 13 13 C 1.53374 * 108.63152 * 235.24738 * 12 11 9 14 14 N 1.46965 * 108.63547 * 310.56814 * 13 12 11 15 15 C 1.36936 * 120.59768 * 235.20907 * 14 13 12 16 16 H 1.07995 * 119.99924 * 31.73717 * 15 14 13 17 17 C 1.38806 * 119.99808 * 211.74146 * 15 14 13 18 18 N 1.31618 * 120.00217 * 198.77147 * 17 15 14 19 19 Si 1.86800 * 120.00390 * 18.77163 * 17 15 14 20 20 H 1.48498 * 109.47063 * 270.00050 * 19 17 15 21 21 H 1.48501 * 109.46765 * 29.99702 * 19 17 15 22 22 H 1.48493 * 109.47613 * 149.99783 * 19 17 15 23 23 C 1.46962 * 118.80780 * 55.47971 * 14 13 12 24 24 C 1.46968 * 120.59169 * 0.02562 * 11 9 8 25 25 C 1.53513 * 105.28275 * 288.67010 * 8 7 6 26 26 O 1.20755 * 127.33220 * 250.33450 * 25 8 7 27 27 C 1.53270 * 104.80867 * 69.38788 * 25 8 7 28 28 H 1.08999 * 109.46943 * 293.21383 * 1 2 3 29 29 H 1.08999 * 109.46729 * 53.21123 * 1 2 3 30 30 H 1.09001 * 109.46860 * 173.21110 * 1 2 3 31 31 H 1.09002 * 109.46507 * 186.78644 * 3 2 1 32 32 H 1.08999 * 109.47304 * 306.78604 * 3 2 1 33 33 H 1.08998 * 109.47073 * 66.79557 * 3 2 1 34 34 H 1.09005 * 110.43948 * 84.40914 * 6 4 2 35 35 H 1.09005 * 110.43940 * 206.79686 * 6 4 2 36 36 H 1.09000 * 110.92825 * 242.23331 * 7 6 4 37 37 H 1.08998 * 109.79829 * 119.85305 * 7 6 4 38 38 H 1.08995 * 109.61295 * 115.50121 * 12 11 9 39 39 H 1.09005 * 109.61058 * 354.98450 * 12 11 9 40 40 H 1.09011 * 109.60605 * 190.83077 * 13 12 11 41 41 H 1.08994 * 109.75508 * 70.40350 * 13 12 11 42 42 H 0.97007 * 119.99457 * 354.97021 * 18 17 15 43 43 H 1.09007 * 109.60594 * 64.26756 * 23 14 13 44 44 H 1.08999 * 109.61008 * 184.77473 * 23 14 13 45 45 H 1.09002 * 109.60900 * 244.49774 * 24 11 9 46 46 H 1.08997 * 109.60903 * 4.83961 * 24 11 9 47 47 H 1.08994 * 110.85210 * 242.11057 * 27 25 8 48 48 H 1.09000 * 109.76740 * 119.87355 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0970 1.4211 0.0000 4 6 2.1205 -0.8731 -1.1638 5 1 1.9136 -0.5325 -2.1784 6 6 1.5573 -2.2770 -0.7836 7 6 1.5802 -2.2804 0.7742 8 6 2.1202 -0.8708 1.1645 9 6 1.8035 -0.4103 2.5641 10 8 1.1278 0.5818 2.7377 11 7 2.2712 -1.1008 3.6228 12 6 1.9708 -0.6632 4.9932 13 6 3.2920 -0.4846 5.7513 14 7 4.1119 -1.6886 5.5560 15 6 4.5878 -2.3897 6.6317 16 1 4.0168 -2.4269 7.5475 17 6 5.8043 -3.0526 6.5448 18 7 6.0957 -4.0082 7.4017 19 14 7.0279 -2.5885 5.2118 20 1 6.7761 -3.4103 4.0009 21 1 6.8717 -1.1506 4.8755 22 1 8.4086 -2.8356 5.6994 23 6 4.4169 -2.1231 4.1856 24 6 3.0917 -2.3043 3.4274 25 6 3.6080 -0.8885 0.7865 26 8 4.5541 -0.9004 1.5368 27 6 3.6226 -0.9121 -0.7459 28 1 -0.3633 0.4051 0.9445 29 1 -0.3633 0.6154 -0.8230 30 1 -0.3633 -1.0205 -0.1215 31 1 3.1795 1.3803 -0.1214 32 1 1.6601 1.9867 -0.8230 33 1 1.8556 1.9086 0.9445 34 1 0.5448 -2.3981 -1.1690 35 1 2.2063 -3.0643 -1.1673 36 1 2.2424 -3.0593 1.1521 37 1 0.5696 -2.4202 1.1579 38 1 1.3614 -1.4165 5.4925 39 1 1.4341 0.2852 4.9650 40 1 3.0887 -0.3488 6.8136 41 1 3.8229 0.3860 5.3663 42 1 5.4935 -4.1999 8.1376 43 1 5.0248 -1.3668 3.6889 44 1 4.9569 -3.0695 4.2136 45 1 2.5624 -3.1749 3.8149 46 1 3.2928 -2.4415 2.3649 47 1 4.0955 -1.8220 -1.1154 48 1 4.1441 -0.0325 -1.1232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123674792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:12 Heat of formation + Delta-G solvation = -24.087992 kcal Electronic energy + Delta-G solvation = -30087.311443 eV Core-core repulsion = 26336.609800 eV Total energy + Delta-G solvation = -3750.701643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.99751 -39.04656 -38.10687 -36.84861 -34.01839 -32.14746 -31.65660 -31.04450 -30.40342 -29.29395 -26.92411 -26.54321 -24.37162 -23.45201 -23.01596 -21.69013 -21.37287 -19.62624 -19.18374 -18.20827 -17.41428 -16.64102 -16.02901 -15.90798 -15.77969 -14.86988 -14.74658 -14.45143 -14.21736 -14.13054 -13.98323 -13.78583 -13.42202 -13.22069 -12.98055 -12.81737 -12.76581 -12.45880 -12.33947 -12.15922 -12.00598 -11.83460 -11.61746 -11.47734 -11.31460 -10.92084 -10.85231 -10.70890 -10.66387 -10.48291 -10.42990 -9.94578 -9.77580 -9.59072 -9.21545 -9.14123 -8.71645 -8.22643 -7.00370 -6.22864 -3.37405 1.79164 2.70218 3.23797 3.42179 3.57732 3.70925 3.73642 3.99147 4.16552 4.28532 4.57554 4.62322 4.68882 4.77784 4.85346 4.95189 4.99321 5.06416 5.16370 5.20248 5.36108 5.39210 5.50016 5.55333 5.59991 5.62365 5.66615 5.67656 5.69644 5.79859 5.82089 5.82435 5.88801 5.92308 5.98009 6.07388 6.14073 6.25174 6.26688 6.29601 6.50566 6.64278 6.80489 6.93519 7.41238 7.75202 8.02216 8.40035 8.44282 9.04911 9.57904 10.20154 11.12992 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.004910 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.166914 B = 5700.805293 C = 6307.628824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.147 4.147 4 C -0.090 4.090 5 H 0.114 0.886 6 C -0.121 4.121 7 C -0.107 4.107 8 C -0.148 4.148 9 C 0.544 3.456 10 O -0.545 6.545 11 N -0.587 5.587 12 C 0.096 3.904 13 C 0.133 3.867 14 N -0.605 5.605 15 C -0.345 4.345 16 H 0.065 0.935 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 1.063 2.937 20 H -0.293 1.293 21 H -0.284 1.284 22 H -0.299 1.299 23 C 0.115 3.885 24 C 0.091 3.909 25 C 0.372 3.628 26 O -0.410 6.410 27 C -0.171 4.171 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 5.334 -20.759 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.204 4.204 4 C -0.108 4.108 5 H 0.132 0.868 6 C -0.159 4.159 7 C -0.145 4.145 8 C -0.153 4.153 9 C 0.331 3.669 10 O -0.424 6.424 11 N -0.318 5.318 12 C -0.028 4.028 13 C 0.006 3.994 14 N -0.329 5.329 15 C -0.473 4.473 16 H 0.083 0.917 17 C -0.214 4.214 18 N -0.560 5.560 19 Si 0.895 3.105 20 H -0.221 1.221 21 H -0.210 1.210 22 H -0.227 1.227 23 C -0.011 4.011 24 C -0.034 4.034 25 C 0.243 3.757 26 O -0.279 6.279 27 C -0.209 4.209 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.189 5.425 -20.820 23.395 hybrid contribution -1.425 0.254 0.743 1.627 sum -10.614 5.679 -20.077 23.409 Atomic orbital electron populations 1.21769 0.92753 1.01970 1.03079 1.22249 0.96227 0.93980 0.90843 1.21842 1.00079 0.94999 1.03461 1.23636 0.93021 0.95513 0.98654 0.86806 1.22928 1.01970 0.96614 0.94358 1.22822 1.02314 0.92968 0.96348 1.23721 0.97700 0.99392 0.94448 1.19344 0.79623 0.83186 0.84730 1.90610 1.40012 1.26067 1.85709 1.47910 1.50248 1.27535 1.06058 1.22234 0.99275 1.00275 0.80998 1.21319 0.90043 0.89773 0.98271 1.44294 1.60798 1.26485 1.01361 1.20229 1.02647 1.30242 0.94219 0.91700 1.26242 0.96291 0.95651 1.03240 1.70911 1.42050 1.26731 1.16332 0.83784 0.75916 0.76336 0.74483 1.22095 1.20983 1.22652 1.21855 0.93787 0.99794 0.85663 1.22602 0.94134 0.86323 1.00308 1.25469 0.88928 0.69629 0.91656 1.90542 1.42889 1.35153 1.59347 1.23339 0.98560 1.04721 0.94248 0.90829 0.92378 0.92214 0.93017 0.91952 0.90631 0.90337 0.90897 0.90222 0.89900 0.91685 0.89723 0.91118 0.95648 0.92689 0.93432 0.90343 0.91575 0.90920 0.88000 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.45 37.16 0.31 -1.02 16 2 C -0.03 -0.33 0.57 -150.20 -0.09 -0.42 16 3 C -0.15 -1.60 8.49 37.16 0.32 -1.28 16 4 C -0.09 -0.67 4.52 -85.27 -0.39 -1.05 16 5 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.12 -0.87 5.62 -23.65 -0.13 -1.00 16 7 C -0.11 -1.10 4.60 -23.68 -0.11 -1.21 16 8 C -0.15 -1.92 0.31 -151.70 -0.05 -1.97 16 9 C 0.54 9.20 6.83 -10.98 -0.07 9.13 16 10 O -0.55 -10.09 13.10 5.55 0.07 -10.02 16 11 N -0.59 -10.75 2.95 -172.25 -0.51 -11.26 16 12 C 0.10 1.79 6.59 -3.60 -0.02 1.77 16 13 C 0.13 2.85 6.67 -3.60 -0.02 2.83 16 14 N -0.60 -15.05 2.68 -171.80 -0.46 -15.51 16 15 C -0.34 -9.81 9.87 -15.06 -0.15 -9.96 16 16 H 0.07 1.96 8.06 -52.49 -0.42 1.53 16 17 C -0.01 -0.37 5.23 -17.43 -0.09 -0.46 16 18 N -0.92 -28.73 13.70 55.49 0.76 -27.97 16 19 Si 1.06 27.46 24.77 -169.99 -4.21 23.25 16 20 H -0.29 -7.09 6.56 56.52 0.37 -6.72 16 21 H -0.28 -7.27 6.86 56.52 0.39 -6.88 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 C 0.12 2.64 4.12 -3.40 -0.01 2.62 16 24 C 0.09 1.69 5.08 -3.40 -0.02 1.67 16 25 C 0.37 5.04 4.92 -26.33 -0.13 4.91 16 26 O -0.41 -7.24 14.05 6.00 0.08 -7.15 16 27 C -0.17 -1.52 5.51 -25.01 -0.14 -1.66 16 28 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.50 5.37 -51.93 -0.28 0.22 16 31 H 0.05 0.55 5.79 -51.93 -0.30 0.25 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.03 6.74 -51.93 -0.35 0.68 16 34 H 0.08 0.47 7.21 -51.93 -0.37 0.09 16 35 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 36 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 37 H 0.08 0.84 7.56 -51.93 -0.39 0.45 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 40 H 0.07 1.47 7.93 -51.92 -0.41 1.06 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 43 H 0.05 1.14 5.58 -51.92 -0.29 0.85 16 44 H 0.08 1.91 4.70 -51.93 -0.24 1.67 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.07 1.19 2.72 -51.93 -0.14 1.05 16 47 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 48 H 0.10 0.80 7.25 -51.93 -0.38 0.42 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -33.80 341.32 -7.08 -40.87 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.17 Total: -0.25 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.79 Total: 2.90 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.21 Total: -54.74 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.16 Total: -17.18 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.21 Total: 23.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.80 -7.08 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123674792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.786 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds