Wall clock time and date at job start Tue Mar 31 2020 12:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 H 1.08997 * 109.47077 * 55.00623 * 3 2 1 5 5 C 1.50708 * 109.46907 * 174.99830 * 3 2 1 6 6 H 1.07996 * 120.00295 * 119.99982 * 5 3 2 7 7 C 1.37875 * 120.00029 * 300.00340 * 5 3 2 8 8 N 1.31520 * 120.00150 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48512 * 109.46866 * 120.00022 * 9 7 5 12 12 H 1.48497 * 109.47177 * 239.99575 * 9 7 5 13 13 N 1.46495 * 109.47417 * 294.99674 * 3 2 1 14 14 C 1.34782 * 119.99860 * 85.00501 * 13 3 2 15 15 O 1.21588 * 119.99762 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.39935 * 120.00169 * 184.62301 * 16 14 13 18 18 C 1.38930 * 120.04137 * 324.64867 * 17 16 14 19 19 C 1.38125 * 120.03677 * 180.27101 * 18 17 16 20 20 C 1.38209 * 120.12624 * 359.97438 * 19 18 17 21 21 C 1.38764 * 120.08355 * 359.97438 * 20 19 18 22 22 O 1.35902 * 120.01766 * 179.97438 * 21 20 19 23 23 C 1.42898 * 117.00055 * 0.02562 * 22 21 20 24 24 C 1.53003 * 109.46974 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47011 * 65.00028 * 24 23 22 26 26 C 1.53001 * 109.47093 * 184.99923 * 24 23 22 27 27 C 1.38617 * 119.95913 * 0.02562 * 21 20 19 28 28 H 1.08999 * 109.47371 * 300.00356 * 1 2 3 29 29 H 1.09004 * 109.47237 * 59.99906 * 1 2 3 30 30 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47181 * 240.00122 * 2 1 3 32 32 H 1.09003 * 109.46540 * 120.00351 * 2 1 3 33 33 H 0.96996 * 119.99995 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00176 * 265.00267 * 13 3 2 35 35 H 0.96999 * 119.99945 * 4.63256 * 16 14 13 36 36 H 1.07994 * 119.97847 * 0.27156 * 18 17 16 37 37 H 1.08001 * 119.93209 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.95641 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47258 * 300.00028 * 23 22 21 40 40 H 1.08998 * 109.47199 * 59.99716 * 23 22 21 41 41 H 1.09000 * 109.46891 * 304.99991 * 24 23 22 42 42 H 1.08998 * 109.47368 * 299.99867 * 25 24 23 43 43 H 1.09000 * 109.47323 * 60.00227 * 25 24 23 44 44 H 1.09004 * 109.47048 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46928 * 59.99959 * 26 24 23 46 46 H 1.08995 * 109.47065 * 179.97438 * 26 24 23 47 47 H 1.08999 * 109.47101 * 300.00321 * 26 24 23 48 48 H 1.08003 * 120.06133 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.5987 1.5451 0.1938 11 1 6.3999 1.6156 2.6094 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6319 -0.4320 16 7 0.0788 3.2675 -2.5184 17 6 -1.1453 3.9398 -2.6065 18 6 -2.2569 3.4520 -1.9307 19 6 -3.4665 4.1126 -2.0222 20 6 -3.5743 5.2599 -2.7853 21 6 -2.4671 5.7521 -3.4615 22 8 -2.5748 6.8801 -4.2119 23 6 -3.8577 7.5078 -4.2591 24 6 -3.7838 8.7531 -5.1450 25 6 -3.4836 8.3365 -6.5863 26 6 -5.1217 9.4937 -5.0964 27 6 -1.2515 5.0920 -3.3721 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8292 -0.0605 2.9503 34 1 2.2720 2.1231 -1.9977 35 1 0.6708 3.2354 -3.2861 36 1 -2.1751 2.5560 -1.3335 37 1 -4.3296 3.7317 -1.4965 38 1 -4.5216 5.7739 -2.8552 39 1 -4.5880 6.8113 -4.6709 40 1 -4.1584 7.7962 -3.2519 41 1 -2.9918 9.4093 -4.7841 42 1 -2.5305 7.8088 -6.6210 43 1 -4.2756 7.6803 -6.9473 44 1 -3.4314 9.2236 -7.2175 45 1 -5.3355 9.7905 -4.0695 46 1 -5.0689 10.3811 -5.7271 47 1 -5.9136 8.8375 -5.4573 48 1 -0.3886 5.4739 -3.8974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157217708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:04 Heat of formation + Delta-G solvation = -56.977733 kcal Electronic energy + Delta-G solvation = -26589.980056 eV Core-core repulsion = 22837.852206 eV Total energy + Delta-G solvation = -3752.127849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.47036 -39.58008 -37.68088 -35.72517 -35.08774 -34.02252 -32.38637 -30.97314 -30.30791 -28.80557 -27.53408 -26.93611 -26.65622 -23.29333 -22.62083 -22.28889 -20.72046 -20.33818 -19.51682 -18.32256 -18.18805 -16.49115 -16.33112 -16.02397 -15.89594 -15.49590 -14.96450 -14.82055 -14.56658 -14.21580 -14.05342 -13.54751 -13.46213 -13.36463 -12.93946 -12.67247 -12.66265 -12.43164 -12.18559 -11.80998 -11.64006 -11.47425 -11.46166 -11.33839 -11.26388 -10.95982 -10.90437 -10.83522 -10.78047 -10.32798 -10.18827 -9.93588 -9.61437 -9.29369 -9.04204 -8.51555 -8.34371 -7.98474 -7.66722 -6.13508 -4.22598 1.41524 1.61276 2.87894 3.23149 3.30527 3.32861 3.40141 3.69842 4.06984 4.31846 4.40777 4.46012 4.70465 4.85873 4.96799 5.01544 5.08027 5.12672 5.18504 5.20478 5.28064 5.45747 5.47692 5.53983 5.57315 5.64012 5.67790 5.82230 5.92202 5.95983 6.35819 6.40224 6.42373 6.47036 6.52800 6.65116 6.72910 7.02142 7.08237 7.16556 7.35306 7.37449 7.44329 7.45830 7.64121 7.86199 7.98076 8.17926 8.73000 8.84072 9.24720 9.45868 10.91937 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025302 B = 0.002252 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.371777 B =12432.860594 C =13123.035859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.696 5.696 17 C 0.220 3.780 18 C -0.155 4.155 19 C -0.064 4.064 20 C -0.235 4.235 21 C 0.144 3.856 22 O -0.315 6.315 23 C 0.065 3.935 24 C -0.096 4.096 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.190 4.190 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 12.457 -15.352 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.394 3.606 15 O -0.451 6.451 16 N -0.344 5.344 17 C 0.123 3.877 18 C -0.176 4.176 19 C -0.083 4.083 20 C -0.254 4.254 21 C 0.099 3.901 22 O -0.229 6.229 23 C -0.011 4.011 24 C -0.114 4.114 25 C -0.204 4.204 26 C -0.203 4.203 27 C -0.212 4.212 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.873 12.358 -14.332 24.069 hybrid contribution 1.394 -0.053 -0.479 1.475 sum -13.479 12.304 -14.810 23.504 Atomic orbital electron populations 1.21825 0.98305 0.97936 1.01260 1.21958 0.92708 0.99844 1.02255 1.18736 0.94052 0.88888 0.79938 0.93173 1.21257 0.90647 1.38956 1.06318 0.92038 1.24882 0.98636 0.94823 0.95380 1.69906 1.35027 1.37632 1.09307 0.86390 0.84812 0.77745 0.78114 1.19778 1.20888 1.20884 1.45840 1.13137 1.58585 1.19330 1.16092 0.83710 0.78766 0.82054 1.90890 1.51701 1.64048 1.38411 1.42864 1.19659 1.57004 1.14877 1.17171 0.84981 0.90004 0.95571 1.21358 0.90732 1.02826 1.02698 1.20813 0.97330 0.93912 0.96231 1.21097 0.98103 1.01128 1.05106 1.18503 0.93672 0.86347 0.91592 1.86006 1.33362 1.37691 1.65837 1.22864 0.84006 0.94224 0.99968 1.21132 0.99008 0.95347 0.95948 1.21818 1.02359 1.01305 0.94928 1.21782 0.96007 1.00289 1.02259 1.19955 0.96897 0.96205 1.08156 0.93094 0.94304 0.95957 0.95074 0.88241 0.92592 0.78206 0.76250 0.83669 0.85765 0.86027 0.92071 0.92078 0.90067 0.91756 0.92750 0.92589 0.92320 0.91769 0.92345 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 7.08 2.24 -69.08 -0.15 6.92 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.47 11.30 55.43 0.63 -23.84 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.72 -14.57 5.03 -59.81 -0.30 -14.88 16 14 C 0.69 13.71 6.98 -86.91 -0.61 13.11 16 15 O -0.57 -13.19 10.92 5.29 0.06 -13.13 16 16 N -0.70 -10.81 5.34 -14.24 -0.08 -10.89 16 17 C 0.22 3.42 6.29 -83.71 -0.53 2.89 16 18 C -0.16 -2.49 8.70 -39.37 -0.34 -2.84 16 19 C -0.06 -0.86 10.03 -39.63 -0.40 -1.25 16 20 C -0.23 -2.88 9.04 -39.40 -0.36 -3.23 16 21 C 0.14 1.90 6.68 -39.25 -0.26 1.64 16 22 O -0.32 -3.72 9.67 -19.43 -0.19 -3.91 16 23 C 0.06 0.56 4.12 37.16 0.15 0.71 16 24 C -0.10 -0.68 3.16 -90.62 -0.29 -0.96 16 25 C -0.15 -1.02 9.09 37.16 0.34 -0.68 16 26 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 27 C -0.19 -2.64 9.90 -39.25 -0.39 -3.03 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.39 6.73 8.56 -40.82 -0.35 6.38 16 35 H 0.40 4.87 8.84 -40.82 -0.36 4.51 16 36 H 0.15 2.64 6.22 -52.49 -0.33 2.31 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 39 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 383.88 15.07 5.78 5.78 Total: -1.00 -30.27 383.88 -9.57 -39.84 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.74 Total: 11.16 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.71 Total: -5.61 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.25 Total: -49.60 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.13 Total: -17.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.27 -9.57 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157217708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.139 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds