Wall clock time and date at job start Tue Mar 31 2020 12:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 H 1.08997 * 109.47077 * 55.00623 * 3 2 1 5 5 C 1.50708 * 109.46907 * 174.99830 * 3 2 1 6 6 H 1.07996 * 120.00295 * 119.99982 * 5 3 2 7 7 C 1.37875 * 120.00029 * 300.00340 * 5 3 2 8 8 N 1.31520 * 120.00150 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48512 * 109.46866 * 120.00022 * 9 7 5 12 12 H 1.48497 * 109.47177 * 239.99575 * 9 7 5 13 13 N 1.46495 * 109.47417 * 294.99674 * 3 2 1 14 14 C 1.34782 * 119.99860 * 85.00501 * 13 3 2 15 15 O 1.21588 * 119.99762 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.39935 * 120.00169 * 184.62301 * 16 14 13 18 18 C 1.38930 * 120.04137 * 324.64867 * 17 16 14 19 19 C 1.38125 * 120.03677 * 180.27101 * 18 17 16 20 20 C 1.38209 * 120.12624 * 359.97438 * 19 18 17 21 21 C 1.38764 * 120.08355 * 359.97438 * 20 19 18 22 22 O 1.35902 * 120.01766 * 179.97438 * 21 20 19 23 23 C 1.42898 * 117.00055 * 0.02562 * 22 21 20 24 24 C 1.53003 * 109.46974 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47011 * 65.00028 * 24 23 22 26 26 C 1.53001 * 109.47093 * 184.99923 * 24 23 22 27 27 C 1.38617 * 119.95913 * 0.02562 * 21 20 19 28 28 H 1.08999 * 109.47371 * 300.00356 * 1 2 3 29 29 H 1.09004 * 109.47237 * 59.99906 * 1 2 3 30 30 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47181 * 240.00122 * 2 1 3 32 32 H 1.09003 * 109.46540 * 120.00351 * 2 1 3 33 33 H 0.96996 * 119.99995 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00176 * 265.00267 * 13 3 2 35 35 H 0.96999 * 119.99945 * 4.63256 * 16 14 13 36 36 H 1.07994 * 119.97847 * 0.27156 * 18 17 16 37 37 H 1.08001 * 119.93209 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.95641 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47258 * 300.00028 * 23 22 21 40 40 H 1.08998 * 109.47199 * 59.99716 * 23 22 21 41 41 H 1.09000 * 109.46891 * 304.99991 * 24 23 22 42 42 H 1.08998 * 109.47368 * 299.99867 * 25 24 23 43 43 H 1.09000 * 109.47323 * 60.00227 * 25 24 23 44 44 H 1.09004 * 109.47048 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46928 * 59.99959 * 26 24 23 46 46 H 1.08995 * 109.47065 * 179.97438 * 26 24 23 47 47 H 1.08999 * 109.47101 * 300.00321 * 26 24 23 48 48 H 1.08003 * 120.06133 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.5987 1.5451 0.1938 11 1 6.3999 1.6156 2.6094 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6319 -0.4320 16 7 0.0788 3.2675 -2.5184 17 6 -1.1453 3.9398 -2.6065 18 6 -2.2569 3.4520 -1.9307 19 6 -3.4665 4.1126 -2.0222 20 6 -3.5743 5.2599 -2.7853 21 6 -2.4671 5.7521 -3.4615 22 8 -2.5748 6.8801 -4.2119 23 6 -3.8577 7.5078 -4.2591 24 6 -3.7838 8.7531 -5.1450 25 6 -3.4836 8.3365 -6.5863 26 6 -5.1217 9.4937 -5.0964 27 6 -1.2515 5.0920 -3.3721 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8292 -0.0605 2.9503 34 1 2.2720 2.1231 -1.9977 35 1 0.6708 3.2354 -3.2861 36 1 -2.1751 2.5560 -1.3335 37 1 -4.3296 3.7317 -1.4965 38 1 -4.5216 5.7739 -2.8552 39 1 -4.5880 6.8113 -4.6709 40 1 -4.1584 7.7962 -3.2519 41 1 -2.9918 9.4093 -4.7841 42 1 -2.5305 7.8088 -6.6210 43 1 -4.2756 7.6803 -6.9473 44 1 -3.4314 9.2236 -7.2175 45 1 -5.3355 9.7905 -4.0695 46 1 -5.0689 10.3811 -5.7271 47 1 -5.9136 8.8375 -5.4573 48 1 -0.3886 5.4739 -3.8974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157217708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:04 Heat of formation + Delta-G solvation = -74.843986 kcal Electronic energy + Delta-G solvation = -26590.754795 eV Core-core repulsion = 22837.852206 eV Total energy + Delta-G solvation = -3752.902588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72412 -40.77952 -38.82020 -37.08373 -36.15877 -35.39780 -34.27003 -32.73715 -31.40235 -30.06450 -28.70852 -28.01324 -27.46256 -25.12686 -23.70405 -23.63483 -22.06638 -21.33555 -21.05881 -19.81024 -19.38246 -18.07692 -17.32764 -17.27736 -17.08801 -16.77392 -16.48785 -16.22769 -15.81219 -15.34696 -15.20210 -14.84569 -14.63028 -14.49174 -14.07759 -14.06210 -13.71843 -13.49999 -13.35053 -13.17520 -13.01232 -12.86944 -12.82692 -12.70284 -12.28034 -12.22362 -12.14565 -12.03331 -12.00295 -11.59811 -11.54412 -11.50040 -11.17958 -11.03587 -10.89029 -10.52779 -9.73081 -9.38575 -8.91372 -8.15525 -6.32167 0.31636 0.51321 1.44662 1.45685 1.56979 1.69361 2.23047 2.31498 2.44499 2.87686 3.14187 3.48122 3.80483 3.89256 3.95787 4.14056 4.17070 4.30986 4.36278 4.49136 4.51878 4.56616 4.58439 4.60238 4.71069 4.76535 4.79403 4.84754 5.01212 5.03522 5.07426 5.22184 5.23933 5.29967 5.32210 5.39644 5.41963 5.43447 5.47520 5.53084 5.59729 5.64927 5.78246 5.87617 5.96689 6.18280 6.29053 6.49277 6.76019 7.25617 7.36043 7.72356 8.90171 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025302 B = 0.002252 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.371777 B =12432.860594 C =13123.035859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.694 3.306 15 O -0.608 6.608 16 N -0.679 5.679 17 C 0.199 3.801 18 C -0.181 4.181 19 C -0.063 4.063 20 C -0.225 4.225 21 C 0.143 3.857 22 O -0.323 6.323 23 C 0.056 3.944 24 C -0.094 4.094 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.192 4.192 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 13.811 -17.345 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.192 3.808 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.367 5.367 14 C 0.394 3.606 15 O -0.488 6.488 16 N -0.328 5.328 17 C 0.103 3.897 18 C -0.201 4.201 19 C -0.082 4.082 20 C -0.244 4.244 21 C 0.097 3.903 22 O -0.237 6.237 23 C -0.019 4.019 24 C -0.113 4.113 25 C -0.204 4.204 26 C -0.200 4.200 27 C -0.213 4.213 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.418 13.745 -16.402 26.376 hybrid contribution 1.424 -0.356 0.082 1.470 sum -13.994 13.389 -16.320 25.327 Atomic orbital electron populations 1.21646 0.96956 0.98940 1.00243 1.21805 0.93793 0.99163 1.01302 1.18287 0.93466 0.88860 0.80149 0.98249 1.21589 0.91330 1.38815 1.06692 0.91034 1.25755 1.03246 0.94451 0.95057 1.70055 1.36933 1.38382 1.09839 0.85320 0.79197 0.77786 0.78141 1.18521 1.21127 1.20449 1.45452 1.13899 1.58794 1.18554 1.16146 0.83059 0.78657 0.82705 1.90877 1.52582 1.65222 1.40117 1.42509 1.20134 1.56123 1.14048 1.17301 0.84579 0.91012 0.96844 1.21281 0.92400 1.02853 1.03604 1.21047 0.96991 0.93976 0.96179 1.21401 0.99119 1.00325 1.03586 1.18633 0.93594 0.86647 0.91421 1.86018 1.35338 1.37048 1.65292 1.23172 0.82911 0.94862 1.00949 1.21156 0.99917 0.94678 0.95535 1.21814 1.01622 1.01716 0.95210 1.21767 0.94956 1.00469 1.02791 1.20055 0.97979 0.95570 1.07709 0.95491 0.93903 0.93781 0.94061 0.90908 0.92596 0.76366 0.74232 0.86479 0.83654 0.83032 0.90863 0.91290 0.90795 0.93399 0.92233 0.91565 0.91938 0.90994 0.91654 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.51 71.98 0.61 -4.84 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.30 15.11 2.24 44.25 0.10 15.21 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.81 5.29 84.65 0.45 1.25 16 8 N -0.91 -52.04 11.30 21.45 0.24 -51.80 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.71 -29.36 5.03 -461.41 -2.32 -31.68 16 14 C 0.69 28.00 6.98 179.05 1.25 29.25 16 15 O -0.61 -29.17 10.92 -3.99 -0.04 -29.21 16 16 N -0.68 -21.02 5.34 -317.22 -1.69 -22.72 16 17 C 0.20 6.15 6.29 38.14 0.24 6.39 16 18 C -0.18 -5.86 8.70 22.41 0.19 -5.67 16 19 C -0.06 -1.62 10.03 22.24 0.22 -1.40 16 20 C -0.22 -5.00 9.04 22.39 0.20 -4.79 16 21 C 0.14 3.49 6.68 22.49 0.15 3.64 16 22 O -0.32 -6.96 9.67 -92.45 -0.89 -7.85 16 23 C 0.06 0.81 4.12 71.98 0.30 1.11 16 24 C -0.09 -1.13 3.16 -10.79 -0.03 -1.16 16 25 C -0.15 -1.76 9.09 71.98 0.65 -1.11 16 26 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 27 C -0.19 -5.10 9.90 22.48 0.22 -4.87 16 28 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 29 H 0.04 1.88 5.64 -2.38 -0.01 1.86 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.40 13.79 8.56 -92.71 -0.79 13.00 16 35 H 0.42 9.78 8.84 -92.71 -0.82 8.96 16 36 H 0.12 4.47 6.22 -2.91 -0.02 4.45 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.41 6.29 -2.91 -0.02 2.39 16 39 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 40 H 0.07 0.91 7.66 -2.39 -0.02 0.90 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.73 7.82 -2.39 -0.02 0.71 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -67.19 383.88 2.28 -64.90 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.64 Total: 36.02 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.61 Total: -1.68 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.77 Total: -106.19 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.94 Total: -37.07 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -67.19 2.28 -64.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157217708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.939 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds