Wall clock time and date at job start Tue Mar 31 2020 12:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 N 1.46501 * 109.47037 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99483 * 274.38332 * 4 3 2 6 6 H 1.08004 * 120.00198 * 337.76119 * 5 4 3 7 7 C 1.38813 * 119.99718 * 157.76044 * 5 4 3 8 8 N 1.31614 * 120.00131 * 7.77937 * 7 5 4 9 9 Si 1.86807 * 119.99754 * 187.77533 * 7 5 4 10 10 H 1.48497 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46561 * 120.00229 * 9 7 5 12 12 H 1.48494 * 109.47079 * 240.00016 * 9 7 5 13 13 C 1.46494 * 120.00338 * 94.38613 * 4 3 2 14 14 C 1.50708 * 109.46787 * 269.99755 * 13 4 3 15 15 O 1.21279 * 120.00082 * 359.97438 * 14 13 4 16 16 N 1.34776 * 119.99693 * 179.97438 * 14 13 4 17 17 C 1.46502 * 120.00068 * 0.02562 * 16 14 13 18 18 C 1.46500 * 119.99897 * 180.02562 * 16 14 13 19 19 C 1.50689 * 109.47442 * 89.99853 * 18 16 14 20 20 C 1.38288 * 119.97776 * 269.98055 * 19 18 16 21 21 C 1.38242 * 120.11902 * 180.02562 * 20 19 18 22 22 C 1.38176 * 120.05089 * 359.67543 * 21 20 19 23 23 C 1.38706 * 119.94077 * 0.61953 * 22 21 20 24 24 O 1.35908 * 120.05540 * 179.67635 * 23 22 21 25 25 C 1.42897 * 116.99429 * 359.72950 * 24 23 22 26 26 C 1.38129 * 119.97381 * 89.99994 * 19 18 16 27 27 H 1.09007 * 109.46923 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47494 * 299.99975 * 1 2 3 29 29 H 1.09002 * 109.47144 * 60.00596 * 1 2 3 30 30 H 1.09000 * 109.47008 * 239.99849 * 2 1 3 31 31 H 1.09000 * 109.46743 * 119.99736 * 2 1 3 32 32 H 1.08998 * 109.46991 * 59.99717 * 3 2 1 33 33 H 1.09006 * 109.46928 * 300.00138 * 3 2 1 34 34 H 0.96999 * 120.00368 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47312 * 149.99899 * 13 4 3 36 36 H 1.08998 * 109.47448 * 29.99317 * 13 4 3 37 37 H 1.08997 * 109.47494 * 269.99801 * 17 16 14 38 38 H 1.08999 * 109.47191 * 30.00515 * 17 16 14 39 39 H 1.09002 * 109.46963 * 149.99637 * 17 16 14 40 40 H 1.09000 * 109.46816 * 329.99795 * 18 16 14 41 41 H 1.08997 * 109.47061 * 210.00453 * 18 16 14 42 42 H 1.08004 * 119.93760 * 359.97438 * 20 19 18 43 43 H 1.07993 * 119.97651 * 179.97438 * 21 20 19 44 44 H 1.08001 * 120.02735 * 180.30143 * 22 21 20 45 45 H 1.09002 * 109.47505 * 299.99790 * 25 24 23 46 46 H 1.08993 * 109.47905 * 60.00164 * 25 24 23 47 47 H 1.09008 * 109.46833 * 180.02562 * 25 24 23 48 48 H 1.08005 * 120.02039 * 0.02783 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3517 1.1816 6 1 3.7107 1.6357 2.1068 7 6 5.5008 0.8946 1.1908 8 7 6.1359 0.6944 0.0556 9 14 6.3631 0.5639 2.8146 10 1 5.4381 0.8649 3.9366 11 1 6.7692 -0.8631 2.8776 12 1 7.5673 1.4264 2.9202 13 6 4.2370 1.5398 -1.2658 14 6 4.4880 0.1563 -1.8085 15 8 4.0946 -0.8151 -1.1982 16 7 5.1497 -0.0013 -2.9720 17 6 5.6254 1.1722 -3.7089 18 6 5.3932 -1.3460 -3.4998 19 6 4.2459 -1.7524 -4.3882 20 6 3.1559 -2.4122 -3.8506 21 6 2.1019 -2.7868 -4.6630 22 6 2.1322 -2.4968 -6.0136 23 6 3.2271 -1.8406 -6.5563 24 8 3.2623 -1.5600 -7.8856 25 6 2.1397 -1.9752 -8.6661 26 6 4.2839 -1.4660 -5.7389 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 7.0519 0.3753 0.0620 35 1 5.1894 2.0421 -1.0969 36 1 3.6477 2.1102 -1.9837 37 1 4.8531 1.5028 -4.4034 38 1 5.8509 1.9751 -3.0072 39 1 6.5263 0.9116 -4.2645 40 1 5.4797 -2.0507 -2.6728 41 1 6.3179 -1.3479 -4.0769 42 1 3.1283 -2.6359 -2.7943 43 1 1.2520 -3.3023 -4.2408 44 1 1.3065 -2.7853 -6.6470 45 1 2.0301 -3.0575 -8.5981 46 1 1.2371 -1.4943 -8.2892 47 1 2.2956 -1.6909 -9.7069 48 1 5.1357 -0.9514 -6.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:19 Heat of formation + Delta-G solvation = -15.310272 kcal Electronic energy + Delta-G solvation = -28386.119585 eV Core-core repulsion = 24635.798572 eV Total energy + Delta-G solvation = -3750.321013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07509 -38.65866 -37.30654 -35.70568 -34.18317 -32.81858 -31.47180 -30.49144 -30.24208 -27.65022 -27.22095 -26.35874 -25.43183 -24.56048 -22.38966 -22.02928 -20.96170 -19.98669 -18.45900 -17.59869 -16.69739 -16.20248 -15.90522 -15.78203 -15.42285 -15.18002 -14.93520 -14.53660 -14.10775 -13.82200 -13.62455 -13.44629 -12.95382 -12.84782 -12.73290 -12.47565 -12.20600 -11.98790 -11.88706 -11.66334 -11.45632 -11.31054 -11.20989 -11.08196 -10.98537 -10.92511 -10.72291 -10.65275 -10.49704 -10.20482 -9.96688 -9.79192 -9.50868 -8.81147 -8.66559 -8.15209 -8.00761 -7.63907 -6.72658 -5.75298 -3.13889 1.45223 1.64403 3.24967 3.41602 3.50129 3.50777 3.80762 4.25757 4.36386 4.60237 4.82413 4.96064 4.99604 5.05599 5.26369 5.32234 5.41219 5.48612 5.58343 5.62823 5.66756 5.76627 5.86757 5.87604 5.92210 6.02590 6.15909 6.19999 6.26751 6.30694 6.33167 6.41047 6.45939 6.59159 6.65386 6.66429 6.71130 6.88017 6.91073 6.98030 7.19792 7.38128 7.45626 7.47068 7.59198 7.79900 8.39790 8.63459 9.25111 9.78468 9.94079 10.34878 11.31664 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003981 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.380484 B = 7032.119266 C = 7948.308806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.152 3.848 4 N -0.580 5.580 5 C -0.238 4.238 6 H 0.073 0.927 7 C 0.008 3.992 8 N -0.909 5.909 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.293 1.293 13 C 0.168 3.832 14 C 0.538 3.462 15 O -0.533 6.533 16 N -0.626 5.626 17 C 0.094 3.906 18 C 0.159 3.841 19 C -0.053 4.053 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.213 4.213 23 C 0.115 3.885 24 O -0.321 6.321 25 C 0.030 3.970 26 C -0.141 4.141 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.023 0.977 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -2.716 -15.035 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.025 3.975 4 N -0.299 5.299 5 C -0.366 4.366 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.557 5.557 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.220 1.220 13 C 0.038 3.962 14 C 0.327 3.673 15 O -0.407 6.407 16 N -0.363 5.363 17 C -0.051 4.051 18 C 0.035 3.965 19 C -0.054 4.054 20 C -0.146 4.146 21 C -0.104 4.104 22 C -0.232 4.232 23 C 0.070 3.930 24 O -0.235 6.235 25 C -0.066 4.066 26 C -0.160 4.160 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.114 0.886 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.712 -3.131 -14.725 16.101 hybrid contribution 0.333 -0.643 0.638 0.965 sum -5.379 -3.773 -14.086 15.543 Atomic orbital electron populations 1.21785 0.98348 1.00105 1.00327 1.22145 0.92265 1.00453 1.03081 1.20901 0.84463 0.94004 0.98089 1.43815 0.99624 1.84101 1.02378 1.19269 0.95239 1.35954 0.86184 0.90918 1.24892 0.97851 0.99295 0.96835 1.69665 1.11404 1.50929 1.23657 0.86132 0.78993 0.77706 0.83335 1.20596 1.21804 1.22048 1.20776 0.98319 0.91366 0.85758 1.22055 0.74336 0.94254 0.76645 1.90452 1.51535 1.42016 1.56670 1.48079 1.60372 1.04047 1.23817 1.21541 0.97756 0.89358 0.96401 1.20104 0.93173 0.87219 0.96048 1.20331 0.97105 0.95173 0.92829 1.21215 0.93413 0.99351 1.00628 1.20936 0.98266 0.98475 0.92755 1.21136 0.98932 1.06307 0.96828 1.18955 0.94897 0.96387 0.82711 1.86046 1.43229 1.76995 1.17223 1.22983 0.88487 0.99764 0.95331 1.20273 0.98507 1.04747 0.92482 0.94062 0.93708 0.93897 0.91532 0.92355 0.94161 0.94829 0.93698 0.86435 0.95964 0.94503 0.90719 0.92814 0.89446 0.91214 0.85032 0.86159 0.86091 0.92925 0.92843 0.88572 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.08 16 2 C -0.14 -2.92 5.68 -26.73 -0.15 -3.07 16 3 C 0.15 3.27 5.72 -4.04 -0.02 3.25 16 4 N -0.58 -14.46 2.07 -174.61 -0.36 -14.82 16 5 C -0.24 -6.45 9.70 -15.06 -0.15 -6.60 16 6 H 0.07 1.96 7.84 -52.48 -0.41 1.55 16 7 C 0.01 0.21 5.41 -17.43 -0.09 0.11 16 8 N -0.91 -24.86 8.21 55.49 0.46 -24.40 16 9 Si 0.91 22.18 29.56 -169.99 -5.03 17.16 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.17 3.91 4.02 -5.19 -0.02 3.89 16 14 C 0.54 12.42 5.63 -10.98 -0.06 12.36 16 15 O -0.53 -13.94 12.99 5.56 0.07 -13.87 16 16 N -0.63 -11.97 2.86 -182.96 -0.52 -12.49 16 17 C 0.09 1.45 10.28 59.85 0.62 2.07 16 18 C 0.16 2.74 5.57 -5.20 -0.03 2.71 16 19 C -0.05 -0.85 5.46 -104.65 -0.57 -1.42 16 20 C -0.13 -2.11 9.70 -39.56 -0.38 -2.50 16 21 C -0.09 -1.23 10.04 -39.60 -0.40 -1.62 16 22 C -0.21 -2.80 9.04 -39.43 -0.36 -3.15 16 23 C 0.12 1.62 6.69 -39.22 -0.26 1.35 16 24 O -0.32 -4.07 10.50 -19.45 -0.20 -4.27 16 25 C 0.03 0.25 9.81 101.05 0.99 1.24 16 26 C -0.14 -2.08 9.64 -39.43 -0.38 -2.46 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.54 6.38 -51.93 -0.33 1.20 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.03 0.66 7.84 -51.93 -0.41 0.26 16 34 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 35 H 0.12 2.94 5.51 -51.93 -0.29 2.65 16 36 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.21 6.44 -51.93 -0.33 0.88 16 39 H 0.05 0.71 7.89 -51.93 -0.41 0.30 16 40 H 0.09 1.72 7.36 -51.93 -0.38 1.34 16 41 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 42 H 0.13 2.44 7.58 -52.48 -0.40 2.04 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.27 6.30 -52.49 -0.33 0.93 16 45 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 46 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 47 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 48 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -31.32 385.29 -8.52 -39.84 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.84 Total: 2.98 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.90 Total: 4.07 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.43 Total: -51.71 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.13 Total: -18.14 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.32 -8.52 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.534 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds