Wall clock time and date at job start Tue Mar 31 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 N 1.46497 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00394 * 272.14028 * 4 3 2 6 6 H 1.07999 * 120.00274 * 8.57260 * 5 4 3 7 7 C 1.38818 * 120.00224 * 188.57157 * 5 4 3 8 8 N 1.31619 * 119.99939 * 24.80092 * 7 5 4 9 9 Si 1.86799 * 120.00023 * 204.80038 * 7 5 4 10 10 H 1.48505 * 109.46888 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46844 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.47449 * 240.00197 * 9 7 5 13 13 C 1.46504 * 119.99652 * 92.14902 * 4 3 2 14 14 C 1.50700 * 109.47241 * 89.99399 * 13 4 3 15 15 O 1.21283 * 120.00082 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99822 * 179.97438 * 14 13 4 17 17 C 1.46496 * 119.99968 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.47076 * 35.00374 * 17 16 14 19 19 C 1.52998 * 109.47484 * 275.00223 * 17 16 14 20 20 C 1.50701 * 109.46948 * 155.00202 * 17 16 14 21 21 C 1.38168 * 120.03072 * 25.00183 * 20 17 16 22 22 C 1.38238 * 120.05380 * 180.02562 * 21 20 17 23 23 C 1.38283 * 120.11577 * 0.02562 * 22 21 20 24 24 C 1.38124 * 120.05741 * 359.97438 * 23 22 21 25 25 C 1.38716 * 120.02856 * 205.02390 * 20 17 16 26 26 O 1.35903 * 120.05409 * 359.95905 * 25 20 17 27 27 C 1.42901 * 117.00107 * 180.02562 * 26 25 20 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46704 * 299.99739 * 1 2 3 30 30 H 1.09000 * 109.47073 * 59.99984 * 1 2 3 31 31 H 1.09002 * 109.47387 * 240.00058 * 2 1 3 32 32 H 1.08999 * 109.47031 * 120.00570 * 2 1 3 33 33 H 1.09004 * 109.46650 * 60.00237 * 3 2 1 34 34 H 1.09000 * 109.47066 * 300.00020 * 3 2 1 35 35 H 0.96995 * 119.99721 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47111 * 329.99077 * 13 4 3 37 37 H 1.09006 * 109.47021 * 209.99408 * 13 4 3 38 38 H 0.97001 * 120.00110 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.46571 * 60.00184 * 19 17 16 40 40 H 1.08998 * 109.46876 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.46791 * 300.00181 * 19 17 16 42 42 H 1.07999 * 119.96768 * 359.74115 * 21 20 17 43 43 H 1.08003 * 119.94419 * 179.97438 * 22 21 20 44 44 H 1.08006 * 119.97119 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.03167 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.46975 * 299.99719 * 27 26 25 47 47 H 1.09001 * 109.47144 * 59.99823 * 27 26 25 48 48 H 1.09003 * 109.47258 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3982 1.1859 6 1 3.6580 1.2243 2.1100 7 6 5.5658 1.5769 1.1998 8 7 6.1521 2.2482 0.2313 9 14 6.5861 0.8646 2.5931 10 1 5.6948 0.1590 3.5486 11 1 7.5770 -0.0939 2.0410 12 1 7.2975 1.9618 3.2968 13 6 4.2380 1.4897 -1.2670 14 6 4.4893 2.9257 -1.6487 15 8 4.0954 3.8215 -0.9322 16 7 5.1527 3.2146 -2.7858 17 6 5.3966 4.6106 -3.1571 18 1 5.5698 5.2010 -2.2573 19 6 4.1782 5.1607 -3.9014 20 6 6.6081 4.6886 -4.0500 21 6 6.9850 3.5921 -4.8015 22 6 8.0965 3.6629 -5.6203 23 6 8.8342 4.8305 -5.6892 24 6 8.4617 5.9295 -4.9400 25 6 7.3461 5.8611 -4.1178 26 8 6.9772 6.9412 -3.3800 27 6 7.7834 8.1149 -3.5000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 7.1139 2.3733 0.2413 36 1 3.6492 1.0045 -2.0455 37 1 5.1904 0.9713 -1.1555 38 1 5.4681 2.4981 -3.3586 39 1 3.3021 5.1042 -3.2555 40 1 4.3596 6.1995 -4.1772 41 1 4.0051 4.5703 -4.8011 42 1 6.4133 2.6775 -4.7456 43 1 8.3897 2.8046 -6.2066 44 1 9.7020 4.8834 -6.3300 45 1 9.0379 6.8413 -4.9944 46 1 8.8048 7.8869 -3.1951 47 1 7.7805 8.4533 -4.5362 48 1 7.3797 8.9000 -2.8607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122991841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:43 Heat of formation + Delta-G solvation = -20.505426 kcal Electronic energy + Delta-G solvation = -27883.050670 eV Core-core repulsion = 24132.504378 eV Total energy + Delta-G solvation = -3750.546292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30029 -38.37146 -37.31370 -35.87361 -34.44108 -32.85064 -31.05611 -30.45080 -30.16252 -28.98982 -27.26157 -26.73709 -25.46241 -23.61544 -22.34202 -21.97567 -20.77908 -19.99657 -19.13702 -18.04867 -16.87446 -16.22621 -15.96710 -15.70101 -15.25930 -15.02239 -14.52206 -14.44030 -14.24254 -13.82634 -13.53717 -13.53311 -13.19670 -13.03049 -12.77093 -12.58150 -12.27701 -12.11857 -11.99024 -11.69823 -11.57913 -11.42872 -11.23410 -11.10025 -10.99924 -10.86408 -10.66795 -10.61309 -10.39735 -10.24621 -10.01537 -9.72815 -9.71792 -8.80576 -8.64900 -8.14607 -8.09683 -7.88351 -6.81038 -5.72091 -2.97189 1.37927 1.50518 3.33037 3.43986 3.52634 3.54943 3.80968 4.23232 4.43310 4.64411 4.76492 4.85850 5.02928 5.08530 5.10337 5.34238 5.37972 5.43853 5.45703 5.53680 5.65531 5.67964 5.75823 5.78537 5.88458 5.98723 6.07095 6.14569 6.27890 6.28495 6.35974 6.38622 6.44452 6.52425 6.54583 6.62884 6.63496 6.70321 6.82810 6.92564 6.96959 7.16542 7.27807 7.44656 7.63538 7.86783 8.34547 8.78205 9.25423 9.83864 9.99664 10.36869 11.37656 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003809 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.186294 B = 7349.220870 C = 8249.196613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.575 5.575 5 C -0.242 4.242 6 H 0.076 0.924 7 C -0.003 4.003 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.295 1.295 13 C 0.164 3.836 14 C 0.532 3.468 15 O -0.531 6.531 16 N -0.746 5.746 17 C 0.195 3.805 18 H 0.095 0.905 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.077 4.077 22 C -0.154 4.154 23 C -0.091 4.091 24 C -0.208 4.208 25 C 0.133 3.867 26 O -0.308 6.308 27 C 0.028 3.972 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.251 0.749 36 H 0.034 0.966 37 H 0.101 0.899 38 H 0.382 0.618 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 4.516 -14.315 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.294 5.294 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.200 4.200 8 N -0.541 5.541 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.222 1.222 13 C 0.033 3.967 14 C 0.318 3.682 15 O -0.404 6.404 16 N -0.403 5.403 17 C 0.089 3.911 18 H 0.113 0.887 19 C -0.207 4.207 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.172 4.172 23 C -0.109 4.109 24 C -0.227 4.227 25 C 0.087 3.913 26 O -0.221 6.221 27 C -0.067 4.067 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.216 0.784 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.679 5.228 -13.568 14.637 hybrid contribution 1.391 -0.308 0.323 1.461 sum 3.070 4.920 -13.244 14.458 Atomic orbital electron populations 1.21724 0.97313 1.00375 1.01079 1.22120 0.93681 1.00770 1.01637 1.20755 0.84419 0.93018 0.99179 1.43897 0.99657 1.83778 1.02069 1.19249 0.89650 1.41789 0.86374 0.90576 1.24670 0.97327 0.99896 0.98101 1.69923 1.09294 1.40125 1.34745 0.86267 0.80338 0.78769 0.81779 1.20516 1.21807 1.22229 1.20690 0.97966 0.91385 0.86670 1.22039 0.74922 0.93759 0.77434 1.90497 1.51429 1.48923 1.49566 1.46431 1.62046 1.05575 1.26198 1.19307 0.89791 0.85829 0.96137 0.88728 1.22085 0.98568 1.00166 0.99915 1.19525 0.98520 0.91834 1.00586 1.20786 0.96566 0.97410 0.94748 1.20996 0.96689 0.98231 1.01321 1.20852 0.99049 0.92707 0.98267 1.21155 0.99013 1.00632 1.01923 1.18793 0.93420 0.87468 0.91630 1.86160 1.52676 1.20285 1.63006 1.23033 0.95587 0.86141 1.01933 0.93753 0.93225 0.93442 0.93037 0.92118 0.93763 0.94707 0.93853 0.94788 0.88074 0.78368 0.91908 0.92562 0.93225 0.85346 0.86001 0.86165 0.85723 0.92811 0.92935 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.55 6.25 -26.73 -0.17 -2.71 16 3 C 0.15 3.29 5.67 -4.04 -0.02 3.27 16 4 N -0.58 -14.50 2.02 -174.60 -0.35 -14.85 16 5 C -0.24 -6.72 9.70 -15.06 -0.15 -6.86 16 6 H 0.08 2.11 7.94 -52.49 -0.42 1.69 16 7 C 0.00 -0.08 4.90 -17.43 -0.09 -0.16 16 8 N -0.89 -25.67 8.95 55.49 0.50 -25.17 16 9 Si 0.90 22.20 29.62 -169.99 -5.04 17.17 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 13 C 0.16 3.83 5.42 -5.19 -0.03 3.80 16 14 C 0.53 12.74 5.86 -10.98 -0.06 12.67 16 15 O -0.53 -15.12 15.82 5.56 0.09 -15.03 16 16 N -0.75 -14.50 5.00 -54.93 -0.27 -14.77 16 17 C 0.20 3.61 2.51 -69.08 -0.17 3.43 16 18 H 0.09 2.15 7.13 -51.93 -0.37 1.78 16 19 C -0.15 -2.43 9.47 37.16 0.35 -2.07 16 20 C -0.10 -1.65 5.07 -104.47 -0.53 -2.18 16 21 C -0.08 -1.05 9.24 -39.61 -0.37 -1.42 16 22 C -0.15 -1.83 10.04 -39.56 -0.40 -2.22 16 23 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 24 C -0.21 -2.58 9.04 -39.43 -0.36 -2.93 16 25 C 0.13 1.99 6.66 -39.22 -0.26 1.73 16 26 O -0.31 -4.63 9.63 -19.43 -0.19 -4.82 16 27 C 0.03 0.28 9.81 101.05 0.99 1.28 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 34 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.03 0.68 8.07 -51.93 -0.42 0.27 16 37 H 0.10 2.53 6.30 -51.93 -0.33 2.21 16 38 H 0.38 6.32 6.21 -40.82 -0.25 6.07 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.13 1.57 6.07 -52.49 -0.32 1.26 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 46 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 47 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -33.90 389.11 -8.54 -42.44 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.85 Total: 6.75 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.28 Total: 2.42 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.13 Total: -54.80 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.10 Total: -19.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.04 Total: 17.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.90 -8.54 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122991841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.936 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds