Wall clock time and date at job start Tue Mar 31 2020 12:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 N 1.46497 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00394 * 272.14028 * 4 3 2 6 6 H 1.07999 * 120.00274 * 8.57260 * 5 4 3 7 7 C 1.38818 * 120.00224 * 188.57157 * 5 4 3 8 8 N 1.31619 * 119.99939 * 24.80092 * 7 5 4 9 9 Si 1.86799 * 120.00023 * 204.80038 * 7 5 4 10 10 H 1.48505 * 109.46888 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46844 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.47449 * 240.00197 * 9 7 5 13 13 C 1.46504 * 119.99652 * 92.14902 * 4 3 2 14 14 C 1.50700 * 109.47241 * 89.99399 * 13 4 3 15 15 O 1.21283 * 120.00082 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99822 * 179.97438 * 14 13 4 17 17 C 1.46496 * 119.99968 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.47076 * 35.00374 * 17 16 14 19 19 C 1.52998 * 109.47484 * 275.00223 * 17 16 14 20 20 C 1.50701 * 109.46948 * 155.00202 * 17 16 14 21 21 C 1.38168 * 120.03072 * 25.00183 * 20 17 16 22 22 C 1.38238 * 120.05380 * 180.02562 * 21 20 17 23 23 C 1.38283 * 120.11577 * 0.02562 * 22 21 20 24 24 C 1.38124 * 120.05741 * 359.97438 * 23 22 21 25 25 C 1.38716 * 120.02856 * 205.02390 * 20 17 16 26 26 O 1.35903 * 120.05409 * 359.95905 * 25 20 17 27 27 C 1.42901 * 117.00107 * 180.02562 * 26 25 20 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46704 * 299.99739 * 1 2 3 30 30 H 1.09000 * 109.47073 * 59.99984 * 1 2 3 31 31 H 1.09002 * 109.47387 * 240.00058 * 2 1 3 32 32 H 1.08999 * 109.47031 * 120.00570 * 2 1 3 33 33 H 1.09004 * 109.46650 * 60.00237 * 3 2 1 34 34 H 1.09000 * 109.47066 * 300.00020 * 3 2 1 35 35 H 0.96995 * 119.99721 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47111 * 329.99077 * 13 4 3 37 37 H 1.09006 * 109.47021 * 209.99408 * 13 4 3 38 38 H 0.97001 * 120.00110 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.46571 * 60.00184 * 19 17 16 40 40 H 1.08998 * 109.46876 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.46791 * 300.00181 * 19 17 16 42 42 H 1.07999 * 119.96768 * 359.74115 * 21 20 17 43 43 H 1.08003 * 119.94419 * 179.97438 * 22 21 20 44 44 H 1.08006 * 119.97119 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.03167 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.46975 * 299.99719 * 27 26 25 47 47 H 1.09001 * 109.47144 * 59.99823 * 27 26 25 48 48 H 1.09003 * 109.47258 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3982 1.1859 6 1 3.6580 1.2243 2.1100 7 6 5.5658 1.5769 1.1998 8 7 6.1521 2.2482 0.2313 9 14 6.5861 0.8646 2.5931 10 1 5.6948 0.1590 3.5486 11 1 7.5770 -0.0939 2.0410 12 1 7.2975 1.9618 3.2968 13 6 4.2380 1.4897 -1.2670 14 6 4.4893 2.9257 -1.6487 15 8 4.0954 3.8215 -0.9322 16 7 5.1527 3.2146 -2.7858 17 6 5.3966 4.6106 -3.1571 18 1 5.5698 5.2010 -2.2573 19 6 4.1782 5.1607 -3.9014 20 6 6.6081 4.6886 -4.0500 21 6 6.9850 3.5921 -4.8015 22 6 8.0965 3.6629 -5.6203 23 6 8.8342 4.8305 -5.6892 24 6 8.4617 5.9295 -4.9400 25 6 7.3461 5.8611 -4.1178 26 8 6.9772 6.9412 -3.3800 27 6 7.7834 8.1149 -3.5000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 7.1139 2.3733 0.2413 36 1 3.6492 1.0045 -2.0455 37 1 5.1904 0.9713 -1.1555 38 1 5.4681 2.4981 -3.3586 39 1 3.3021 5.1042 -3.2555 40 1 4.3596 6.1995 -4.1772 41 1 4.0051 4.5703 -4.8011 42 1 6.4133 2.6775 -4.7456 43 1 8.3897 2.8046 -6.2066 44 1 9.7020 4.8834 -6.3300 45 1 9.0379 6.8413 -4.9944 46 1 8.8048 7.8869 -3.1951 47 1 7.7805 8.4533 -4.5362 48 1 7.3797 8.9000 -2.8607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122991841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:42 Heat of formation + Delta-G solvation = -41.327073 kcal Electronic energy + Delta-G solvation = -27883.953564 eV Core-core repulsion = 24132.504378 eV Total energy + Delta-G solvation = -3751.449186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38411 -40.07699 -38.45482 -37.56769 -36.02635 -34.60392 -32.64417 -32.22845 -31.15119 -30.23301 -28.53834 -28.09420 -27.27610 -24.91598 -23.86699 -23.14421 -22.13810 -21.58100 -20.82053 -19.26752 -18.63020 -17.65437 -17.26004 -17.04431 -16.67233 -16.56262 -15.96601 -15.78020 -15.64725 -15.40445 -15.11603 -14.74119 -14.72759 -14.39462 -14.30556 -13.89750 -13.84188 -13.37329 -13.27205 -13.17427 -13.00205 -12.75561 -12.66785 -12.59147 -12.52687 -12.16263 -12.08842 -12.02305 -11.99033 -11.92493 -11.73304 -11.56780 -11.34711 -10.66153 -10.18414 -9.84276 -9.64238 -9.07275 -8.80696 -7.83883 -5.10088 0.37508 0.51176 1.45418 1.48307 1.58396 2.41389 2.47708 2.52851 2.77259 2.85375 3.30862 3.67538 3.69009 3.92595 4.10602 4.23363 4.26635 4.35223 4.37131 4.41731 4.43735 4.46497 4.54168 4.60956 4.66601 4.69372 4.73793 4.78969 4.79737 4.87980 4.95899 5.03044 5.10561 5.22565 5.25281 5.30113 5.30834 5.40917 5.45865 5.51327 5.59479 5.65073 5.69697 5.89205 6.03933 6.29077 6.48879 7.04001 7.21775 7.86759 8.11151 8.31121 9.22547 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003809 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.186294 B = 7349.220870 C = 8249.196613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.592 5.592 5 C -0.252 4.252 6 H 0.069 0.931 7 C -0.051 4.051 8 N -0.913 5.913 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.307 1.307 13 C 0.165 3.835 14 C 0.532 3.468 15 O -0.585 6.585 16 N -0.730 5.730 17 C 0.202 3.798 18 H 0.041 0.959 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.209 4.209 25 C 0.112 3.888 26 O -0.342 6.342 27 C 0.020 3.980 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.242 0.758 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 3.477 -16.588 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.025 3.975 4 N -0.311 5.311 5 C -0.382 4.382 6 H 0.087 0.913 7 C -0.246 4.246 8 N -0.560 5.560 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.235 1.235 13 C 0.034 3.966 14 C 0.320 3.680 15 O -0.463 6.463 16 N -0.386 5.386 17 C 0.096 3.904 18 H 0.059 0.941 19 C -0.195 4.195 20 C -0.135 4.135 21 C -0.104 4.104 22 C -0.171 4.171 23 C -0.102 4.102 24 C -0.227 4.227 25 C 0.067 3.933 26 O -0.256 6.256 27 C -0.074 4.074 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.235 0.765 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.155 0.845 43 H 0.170 0.830 44 H 0.174 0.826 45 H 0.168 0.832 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.561 4.161 -15.890 16.624 hybrid contribution 1.143 0.094 0.970 1.502 sum 3.704 4.254 -14.920 15.951 Atomic orbital electron populations 1.21665 0.94370 1.02067 1.01681 1.21924 0.96123 0.97560 1.01245 1.20907 0.82735 0.95380 0.98458 1.44146 1.01096 1.83969 1.01925 1.19447 0.90164 1.41279 0.87277 0.91263 1.25340 0.98211 1.00468 1.00602 1.70102 1.08589 1.41053 1.36273 0.85311 0.78789 0.77548 0.79366 1.19558 1.21198 1.23546 1.20698 0.97707 0.91089 0.87080 1.22117 0.74614 0.93501 0.77796 1.90466 1.53911 1.50311 1.51657 1.46174 1.60429 1.06907 1.25131 1.19125 0.92330 0.84011 0.94893 0.94077 1.21947 0.96506 1.01118 0.99882 1.19416 0.98503 0.93704 1.01925 1.20964 0.97570 0.96881 0.94938 1.21367 0.95592 0.99540 1.00617 1.21336 0.99502 0.91826 0.97521 1.21482 0.98056 1.02182 1.00996 1.19050 0.94429 0.87318 0.92514 1.86119 1.54302 1.21564 1.63613 1.23308 0.95553 0.84888 1.03699 0.91478 0.93187 0.92362 0.92360 0.93531 0.95527 0.94393 0.94819 0.91234 0.89774 0.76507 0.94439 0.91641 0.90861 0.84543 0.83037 0.82627 0.83230 0.92007 0.90728 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.48 6.25 30.59 0.19 -4.29 16 3 C 0.15 6.56 5.67 86.38 0.49 7.05 16 4 N -0.59 -30.44 2.02 -706.33 -1.43 -31.86 16 5 C -0.25 -14.33 9.70 84.04 0.82 -13.52 16 6 H 0.07 3.93 7.94 -2.91 -0.02 3.91 16 7 C -0.05 -2.93 4.90 84.86 0.42 -2.52 16 8 N -0.91 -54.02 8.95 21.65 0.19 -53.83 16 9 Si 0.96 46.69 29.62 68.60 2.03 48.72 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 13 C 0.16 7.81 5.42 85.63 0.46 8.27 16 14 C 0.53 26.40 5.86 87.66 0.51 26.91 16 15 O -0.59 -35.15 15.82 -3.04 -0.05 -35.20 16 16 N -0.73 -29.21 5.00 -446.09 -2.23 -31.43 16 17 C 0.20 7.82 2.51 44.25 0.11 7.93 16 18 H 0.04 2.03 7.13 -2.38 -0.02 2.01 16 19 C -0.14 -4.58 9.47 71.98 0.68 -3.90 16 20 C -0.13 -4.31 5.07 -19.77 -0.10 -4.41 16 21 C -0.09 -2.22 9.24 22.25 0.21 -2.02 16 22 C -0.15 -3.15 10.04 22.28 0.22 -2.93 16 23 C -0.08 -1.61 10.04 22.25 0.22 -1.38 16 24 C -0.21 -4.68 9.04 22.36 0.20 -4.48 16 25 C 0.11 3.36 6.66 22.51 0.15 3.51 16 26 O -0.34 -10.57 9.63 -92.46 -0.89 -11.46 16 27 C 0.02 0.38 9.81 113.37 1.11 1.50 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 34 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 35 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 37 H 0.08 4.29 6.30 -2.38 -0.02 4.27 16 38 H 0.40 13.19 6.21 -92.71 -0.58 12.61 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.14 3.15 6.07 -2.91 -0.02 3.13 16 43 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 46 H 0.06 1.07 7.66 -2.39 -0.02 1.06 16 47 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 48 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -77.58 389.11 4.41 -73.17 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.37 Total: 29.23 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 6.41 Total: 12.67 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.46 Total: -117.12 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.94 Total: -46.66 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.58 4.41 -73.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122991841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.839 kcal (2) G-P(sol) polarization free energy of solvation -77.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds