Wall clock time and date at job start Tue Mar 31 2020 13:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47220 * 2 1 4 4 C 1.46909 * 110.99913 * 293.35458 * 3 2 1 5 5 C 1.50702 * 109.46749 * 296.54276 * 4 3 2 6 6 H 1.08004 * 120.00321 * 4.68087 * 5 4 3 7 7 C 1.37878 * 119.99656 * 184.69099 * 5 4 3 8 8 N 1.31512 * 120.00021 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00175 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46812 * 90.00459 * 9 7 5 11 11 H 1.48502 * 109.47472 * 210.00574 * 9 7 5 12 12 H 1.48503 * 109.47344 * 330.00831 * 9 7 5 13 13 C 1.46891 * 111.00071 * 57.30293 * 3 2 1 14 14 C 1.50704 * 109.47068 * 66.04585 * 13 3 2 15 15 O 1.21281 * 119.99661 * 6.22817 * 14 13 3 16 16 N 1.34776 * 120.00366 * 186.22562 * 14 13 3 17 17 C 1.46499 * 119.99850 * 357.36365 * 16 14 13 18 18 C 1.50705 * 109.47114 * 89.99523 * 17 16 14 19 19 C 1.34516 * 125.78605 * 90.34563 * 18 17 16 20 20 C 1.41381 * 106.83745 * 180.11516 * 19 18 17 21 21 C 1.34513 * 106.84182 * 359.56818 * 20 19 18 22 22 C 1.50703 * 125.79080 * 180.29692 * 21 20 19 23 23 O 1.34296 * 108.42087 * 0.26641 * 21 20 19 24 24 C 1.46502 * 120.00046 * 177.35809 * 16 14 13 25 25 C 1.53001 * 117.49795 * 16.90551 * 24 16 14 26 26 C 1.52997 * 117.49699 * 308.24457 * 24 16 14 27 27 H 1.09002 * 109.46716 * 183.13778 * 1 2 3 28 28 H 1.08993 * 109.46863 * 303.14081 * 1 2 3 29 29 H 1.09000 * 109.46745 * 63.14149 * 1 2 3 30 30 H 1.09001 * 109.47091 * 240.00261 * 2 1 3 31 31 H 1.08996 * 109.47023 * 120.00086 * 2 1 3 32 32 H 1.08995 * 109.47193 * 56.54217 * 4 3 2 33 33 H 1.08999 * 109.46668 * 176.54601 * 4 3 2 34 34 H 0.97001 * 120.00444 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47584 * 306.05393 * 13 3 2 36 36 H 1.08998 * 109.47603 * 186.04473 * 13 3 2 37 37 H 1.09001 * 109.47272 * 329.99628 * 17 16 14 38 38 H 1.08993 * 109.47167 * 209.99675 * 17 16 14 39 39 H 1.07997 * 126.58258 * 359.94751 * 19 18 17 40 40 H 1.08006 * 126.58165 * 179.82962 * 20 19 18 41 41 H 1.08995 * 109.47227 * 90.00230 * 22 21 20 42 42 H 1.08992 * 109.47310 * 210.00375 * 22 21 20 43 43 H 1.09004 * 109.46754 * 330.00208 * 22 21 20 44 44 H 1.08998 * 115.54817 * 162.57555 * 24 16 14 45 45 H 1.09001 * 117.49862 * 359.97438 * 25 24 16 46 46 H 1.08998 * 117.49747 * 145.02144 * 25 24 16 47 47 H 1.09008 * 117.49256 * 214.97862 * 26 24 16 48 48 H 1.08994 * 117.50322 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6826 2.0626 -1.2592 5 6 2.3849 1.3764 -2.4024 6 1 2.9572 0.4780 -2.2236 7 6 2.2972 1.8957 -3.6766 8 7 2.9096 1.2967 -4.6745 9 14 1.3071 3.4492 -3.9860 10 1 2.1867 4.6357 -3.8310 11 1 0.7557 3.4185 -5.3645 12 1 0.1921 3.5285 -3.0084 13 6 1.4968 2.1282 1.1540 14 6 2.0634 1.5476 2.4241 15 8 2.9125 0.6834 2.3697 16 7 1.6265 1.9888 3.6204 17 6 0.6433 3.0728 3.6868 18 6 -0.7470 2.4914 3.6764 19 6 -1.4609 2.1402 4.7610 20 6 -2.6984 1.6418 4.2930 21 6 -2.6705 1.7272 2.9509 22 6 -3.7803 1.3153 2.0183 23 8 -1.4861 2.2425 2.5830 24 6 2.1348 1.3842 4.8542 25 6 3.4185 0.5572 4.7590 26 6 2.0724 -0.1400 4.9718 27 1 -0.3633 -1.0262 0.0563 28 1 -0.3633 0.5618 0.8605 29 1 -0.3633 0.4643 -0.9168 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.6050 2.0207 -1.4171 33 1 2.0023 3.1034 -1.2085 34 1 2.8476 1.6618 -5.5710 35 1 0.4096 2.0519 1.1732 36 1 1.7861 3.1760 1.0729 37 1 0.7686 3.7303 2.8264 38 1 0.7920 3.6425 4.6040 39 1 -1.1477 2.2206 5.7914 40 1 -3.5120 1.2685 4.8974 41 1 -4.4431 2.1631 1.8454 42 1 -3.3550 0.9874 1.0698 43 1 -4.3455 0.4974 2.4651 44 1 1.9770 1.9659 5.7624 45 1 3.8846 0.4626 3.7782 46 1 4.1051 0.5946 5.6047 47 1 1.8741 -0.5609 5.9575 48 1 1.6529 -0.6929 4.1314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:25 Heat of formation + Delta-G solvation = 18.884130 kcal Electronic energy + Delta-G solvation = -28686.803897 eV Core-core repulsion = 24937.965664 eV Total energy + Delta-G solvation = -3748.838232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52718 -41.51371 -38.92037 -37.17004 -35.87910 -34.66777 -34.08254 -32.71891 -31.47171 -30.48570 -29.16743 -27.29954 -25.36456 -24.78869 -23.80646 -23.24718 -22.62344 -21.38164 -21.21174 -19.93114 -18.89794 -18.32708 -17.81209 -17.36702 -16.94491 -16.80591 -16.29681 -16.21769 -15.75618 -15.46517 -15.16852 -14.92850 -14.51970 -14.41044 -14.31833 -14.05988 -13.78184 -13.70617 -13.67726 -13.53448 -13.42348 -13.16634 -12.94994 -12.77106 -12.72474 -12.52849 -12.42647 -12.22657 -12.06652 -11.91217 -11.59850 -11.41762 -11.25302 -10.77513 -10.76736 -10.24337 -9.59816 -9.20906 -8.97129 -8.26726 -6.30529 0.67212 1.34994 1.37025 1.47510 1.48297 1.62402 1.98600 2.05729 2.35319 3.01413 3.04704 3.20485 3.50933 3.71949 3.90516 4.01508 4.07712 4.12235 4.13926 4.15634 4.19201 4.25972 4.32819 4.41873 4.50449 4.54202 4.56347 4.65630 4.67637 4.69113 4.84034 4.86099 4.88439 4.92851 5.01219 5.08367 5.12647 5.15552 5.29917 5.33418 5.39562 5.51437 5.67387 5.77612 5.92878 6.20417 6.28192 6.31554 6.62963 6.74865 7.22725 7.32215 8.90263 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004594 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.142452 B = 6093.294898 C = 7495.609787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 N -0.527 5.527 4 C 0.175 3.825 5 C -0.516 4.516 6 H 0.032 0.968 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.247 1.247 13 C 0.025 3.975 14 C 0.519 3.481 15 O -0.537 6.537 16 N -0.582 5.582 17 C 0.188 3.812 18 C -0.059 4.059 19 C -0.182 4.182 20 C -0.225 4.225 21 C -0.025 4.025 22 C -0.078 4.078 23 O -0.195 6.195 24 C 0.082 3.918 25 C -0.208 4.208 26 C -0.189 4.189 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.065 0.935 32 H -0.002 1.002 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.172 0.828 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.120 0.880 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 5.790 25.242 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.065 4.065 3 N -0.251 5.251 4 C 0.048 3.952 5 C -0.554 4.554 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.170 1.170 13 C -0.105 4.105 14 C 0.308 3.692 15 O -0.415 6.415 16 N -0.313 5.313 17 C 0.067 3.933 18 C -0.109 4.109 19 C -0.202 4.202 20 C -0.244 4.244 21 C -0.075 4.075 22 C -0.135 4.135 23 O -0.092 6.092 24 C -0.021 4.021 25 C -0.245 4.245 26 C -0.228 4.228 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.174 0.826 39 H 0.189 0.811 40 H 0.182 0.818 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.189 0.811 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.138 0.862 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.823 5.402 24.755 28.397 hybrid contribution -0.940 0.012 -0.884 1.290 sum -13.763 5.414 23.872 28.082 Atomic orbital electron populations 1.22245 0.97482 1.02236 1.01208 1.21923 0.93149 0.90307 1.01072 1.61773 1.59355 1.02259 1.01700 1.19946 0.94042 0.94344 0.86836 1.21214 1.30936 1.11133 0.92118 0.94992 1.25859 0.96582 1.00991 0.95460 1.70062 1.45539 1.42519 1.00919 0.85700 0.79826 0.79334 0.78008 1.18819 1.20746 1.17042 1.22231 0.99223 0.99553 0.89540 1.20844 0.81278 0.81807 0.85247 1.90491 1.32070 1.32261 1.86632 1.47493 1.41869 1.37429 1.04545 1.20317 0.78146 0.87111 1.07776 1.23175 0.95939 1.07400 0.84403 1.21871 0.94471 1.03653 1.00161 1.21884 1.00645 1.08143 0.93730 1.23074 0.86924 1.01464 0.96018 1.20465 0.92610 1.03132 0.97253 1.83993 1.25060 1.63930 1.36227 1.22037 1.00308 0.91654 0.88083 1.23930 0.91837 1.03438 1.05287 1.23151 1.01605 0.95576 1.02471 0.91524 0.92318 0.93323 0.93052 0.91627 0.98488 0.95022 0.92431 0.90585 0.87209 0.88092 0.82615 0.81137 0.81761 0.88720 0.91503 0.87545 0.81125 0.87450 0.87233 0.86220 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 9.25 71.98 0.67 -5.75 16 2 C 0.06 2.81 5.52 86.30 0.48 3.29 16 3 N -0.53 -23.72 4.42 -905.36 -4.00 -27.73 16 4 C 0.17 8.60 3.61 85.56 0.31 8.91 16 5 C -0.52 -30.90 9.06 25.60 0.23 -30.67 16 6 H 0.03 2.18 7.02 -2.91 -0.02 2.15 16 7 C 0.01 0.48 5.47 84.66 0.46 0.94 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.95 44.19 27.38 68.60 1.88 46.06 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.25 -10.57 6.68 99.48 0.66 -9.90 16 13 C 0.03 0.88 3.67 85.56 0.31 1.19 16 14 C 0.52 17.01 7.06 87.66 0.62 17.63 16 15 O -0.54 -21.63 10.48 -3.03 -0.03 -21.66 16 16 N -0.58 -13.27 2.82 -802.14 -2.26 -15.53 16 17 C 0.19 3.01 5.71 85.63 0.49 3.50 16 18 C -0.06 -1.16 6.74 24.83 0.17 -0.99 16 19 C -0.18 -3.04 10.81 22.19 0.24 -2.80 16 20 C -0.23 -4.00 10.81 22.19 0.24 -3.76 16 21 C -0.02 -0.51 7.32 24.83 0.18 -0.33 16 22 C -0.08 -1.19 10.42 71.24 0.74 -0.45 16 23 O -0.19 -4.79 9.01 -2.41 -0.02 -4.81 16 24 C 0.08 1.58 6.62 44.99 0.30 1.88 16 25 C -0.21 -5.02 9.64 30.62 0.30 -4.73 16 26 C -0.19 -4.28 9.90 30.62 0.30 -3.98 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.01 5.79 -2.39 -0.01 2.00 16 29 H 0.05 1.92 6.65 -2.39 -0.02 1.91 16 30 H 0.05 2.62 6.43 -2.39 -0.02 2.60 16 31 H 0.07 2.92 6.16 -2.39 -0.01 2.90 16 32 H 0.00 -0.12 5.79 -2.39 -0.01 -0.13 16 33 H 0.03 1.50 7.16 -2.39 -0.02 1.48 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.08 2.50 4.10 -2.39 -0.01 2.49 16 36 H 0.11 3.38 7.46 -2.39 -0.02 3.36 16 37 H 0.10 1.59 6.63 -2.39 -0.02 1.57 16 38 H 0.16 1.11 8.03 -2.39 -0.02 1.09 16 39 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.17 1.71 8.09 -2.39 -0.02 1.70 16 45 H 0.11 3.63 4.98 -24.24 -0.12 3.51 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.06 1.72 7.81 -2.39 -0.02 1.70 16 Total: -1.00 -79.04 375.92 2.70 -76.34 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.81 Total: 23.92 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 6.03 Total: -16.13 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -5.97 Total: -103.72 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.06 kcal Total: -79.04 2.70 -76.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.221 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds