Wall clock time and date at job start Tue Mar 31 2020 13:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46909 * 109.46800 * 2 1 4 4 C 1.46898 * 111.00222 * 298.69289 * 3 2 1 5 5 C 1.50707 * 109.46946 * 298.72883 * 4 3 2 6 6 H 1.08005 * 119.99607 * 2.93892 * 5 4 3 7 7 C 1.37869 * 120.00087 * 182.94517 * 5 4 3 8 8 N 1.31520 * 119.99951 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47190 * 59.99606 * 9 7 5 11 11 H 1.48497 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47054 * 300.00160 * 9 7 5 13 13 C 1.46899 * 110.99725 * 62.64366 * 3 2 1 14 14 H 1.09001 * 109.47163 * 296.98296 * 13 3 2 15 15 C 1.52998 * 109.47175 * 176.98591 * 13 3 2 16 16 C 1.50703 * 109.47412 * 56.98374 * 13 3 2 17 17 O 1.21300 * 119.99462 * 25.82906 * 16 13 3 18 18 N 1.34768 * 120.00247 * 205.82871 * 16 13 3 19 19 C 1.40133 * 120.00138 * 185.51541 * 18 16 13 20 20 C 1.38722 * 120.08745 * 17.22537 * 19 18 16 21 21 C 1.38200 * 119.98466 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.92019 * 180.02562 * 21 20 19 23 23 C 1.38282 * 120.16142 * 0.02562 * 21 20 19 24 24 C 1.38234 * 120.17949 * 359.70593 * 23 21 20 25 25 C 1.38553 * 120.01853 * 0.54668 * 24 23 21 26 26 O 1.35965 * 120.08889 * 179.74948 * 25 24 23 27 27 C 1.42902 * 117.00033 * 359.72396 * 26 25 24 28 28 H 1.08999 * 109.47425 * 304.41344 * 1 2 3 29 29 H 1.09000 * 109.47258 * 64.41755 * 1 2 3 30 30 H 1.09003 * 109.46553 * 184.41409 * 1 2 3 31 31 H 1.09003 * 109.47272 * 240.00824 * 2 1 3 32 32 H 1.08994 * 109.46974 * 119.99784 * 2 1 3 33 33 H 1.08995 * 109.47321 * 58.72034 * 4 3 2 34 34 H 1.08993 * 109.47110 * 178.72665 * 4 3 2 35 35 H 0.97006 * 119.99737 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46834 * 299.99906 * 15 13 3 37 37 H 1.08998 * 109.47118 * 59.99601 * 15 13 3 38 38 H 1.08999 * 109.47045 * 180.02562 * 15 13 3 39 39 H 0.97000 * 120.00206 * 5.52252 * 18 16 13 40 40 H 1.08001 * 120.00946 * 359.96434 * 20 19 18 41 41 H 1.09006 * 109.47001 * 89.99508 * 22 21 20 42 42 H 1.08996 * 109.47523 * 210.00269 * 22 21 20 43 43 H 1.09001 * 109.46717 * 330.00517 * 22 21 20 44 44 H 1.07998 * 119.90467 * 179.97438 * 23 21 20 45 45 H 1.08008 * 119.99172 * 180.29703 * 24 23 21 46 46 H 1.08995 * 109.47955 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.47319 * 300.00155 * 27 26 25 48 48 H 1.09002 * 109.46816 * 59.99529 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5743 2.1009 -1.2030 5 6 2.1292 1.4194 -2.4273 6 1 2.7110 0.5153 -2.3250 7 6 1.8943 1.9503 -3.6778 8 7 1.1855 3.0511 -3.8024 9 14 2.5827 1.1060 -5.1953 10 1 2.0400 -0.2735 -5.2833 11 1 2.1912 1.8697 -6.4072 12 1 4.0637 1.0502 -5.1017 13 6 1.6008 2.0914 1.2181 14 1 0.5129 2.1524 1.2469 15 6 2.1908 3.5031 1.2174 16 6 2.0942 1.3414 2.4285 17 8 3.0759 0.6338 2.3449 18 7 1.4447 1.4567 3.6037 19 6 1.9675 0.8534 4.7554 20 6 3.2949 0.4517 4.7886 21 6 3.8084 -0.1426 5.9257 22 6 5.2508 -0.5779 5.9604 23 6 3.0020 -0.3389 7.0317 24 6 1.6798 0.0637 7.0080 25 6 1.1558 0.6556 5.8700 26 8 -0.1459 1.0476 5.8433 27 6 -0.9183 0.8132 7.0225 28 1 -0.3634 0.5808 0.8478 29 1 -0.3634 0.4437 -0.9269 30 1 -0.3632 -1.0247 0.0791 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 0.4852 2.0957 -1.2466 34 1 1.9316 3.1300 -1.1666 35 1 1.0199 3.4244 -4.6823 36 1 3.2787 3.4421 1.1885 37 1 1.8340 4.0456 0.3419 38 1 1.8804 4.0270 2.1214 39 1 0.6153 1.9573 3.6524 40 1 3.9268 0.6033 3.9260 41 1 5.8686 0.2409 6.3295 42 1 5.3549 -1.4383 6.6214 43 1 5.5721 -0.8508 4.9552 44 1 3.4075 -0.8042 7.9180 45 1 1.0539 -0.0867 7.8753 46 1 -1.9357 1.1723 6.8679 47 1 -0.9386 -0.2553 7.2372 48 1 -0.4697 1.3440 7.8622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:00 Heat of formation + Delta-G solvation = -52.896472 kcal Electronic energy + Delta-G solvation = -27761.148488 eV Core-core repulsion = 24009.197616 eV Total energy + Delta-G solvation = -3751.950873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03285 -40.69763 -38.85901 -38.18385 -35.96843 -34.75981 -33.24145 -32.60213 -31.09762 -30.20217 -28.73108 -28.18069 -26.81638 -25.82213 -24.69534 -23.76479 -22.39016 -21.85623 -20.50608 -19.17581 -18.51919 -18.17421 -17.93311 -17.02733 -16.76291 -16.64965 -16.57496 -16.27468 -15.43410 -15.40407 -15.27467 -14.94773 -14.71998 -14.55103 -14.38609 -14.17661 -13.76873 -13.46639 -13.40463 -13.26110 -13.16484 -12.97403 -12.81507 -12.68905 -12.64016 -12.51096 -12.40986 -12.36397 -12.11619 -11.91530 -11.85899 -11.58937 -11.40167 -11.20593 -10.58705 -10.40707 -9.47977 -8.93360 -8.67126 -8.18004 -6.25056 0.27021 0.41097 1.41376 1.43875 1.51298 1.55457 1.88091 2.33687 2.42769 2.80585 3.13903 3.25430 3.57896 3.89328 3.98338 4.03110 4.10834 4.18280 4.23909 4.34361 4.43261 4.44617 4.46940 4.48164 4.55138 4.63333 4.75324 4.78120 4.82191 4.86221 4.89532 4.93275 5.00306 5.06396 5.19259 5.20796 5.22728 5.31139 5.37955 5.43941 5.48575 5.67482 5.71880 5.89202 6.06122 6.33300 6.36012 6.43061 6.64830 6.88577 7.11396 7.42972 8.92802 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.003033 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.946250 B = 9228.683875 C = 9892.359837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 N -0.526 5.526 4 C 0.207 3.793 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.065 3.935 14 H 0.067 0.933 15 C -0.134 4.134 16 C 0.526 3.474 17 O -0.530 6.530 18 N -0.653 5.653 19 C 0.108 3.892 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.180 4.180 25 C 0.081 3.919 26 O -0.337 6.337 27 C 0.021 3.979 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H -0.021 1.021 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.422 0.578 40 H 0.140 0.860 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.246 26.446 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.070 4.070 3 N -0.251 5.251 4 C 0.081 3.919 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.198 1.198 13 C -0.047 4.047 14 H 0.085 0.915 15 C -0.191 4.191 16 C 0.314 3.686 17 O -0.406 6.406 18 N -0.297 5.297 19 C 0.013 3.987 20 C -0.155 4.155 21 C -0.111 4.111 22 C -0.164 4.164 23 C -0.121 4.121 24 C -0.199 4.199 25 C 0.034 3.966 26 O -0.251 6.251 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.082 0.918 33 H -0.003 1.003 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.260 0.740 40 H 0.158 0.842 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.172 0.828 45 H 0.178 0.822 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.620 -4.498 26.028 26.463 hybrid contribution -1.086 0.047 -1.100 1.546 sum -2.706 -4.451 24.928 25.466 Atomic orbital electron populations 1.22260 0.97757 1.02245 1.01189 1.22006 0.93171 0.90441 1.01359 1.62101 1.59817 1.02210 1.00957 1.19495 0.92534 0.93775 0.86049 1.21414 1.32760 1.10383 0.91559 0.92671 1.25739 0.95615 0.95672 1.01957 1.70048 1.40696 1.21687 1.24560 0.85568 0.78870 0.78605 0.78367 1.19535 1.20635 1.19814 1.21602 0.98851 0.95284 0.88958 0.91500 1.21757 1.01419 0.92650 1.03290 1.20806 0.83166 0.80665 0.83944 1.90544 1.27110 1.38655 1.84256 1.43327 1.27363 1.52858 1.06191 1.17431 0.92652 1.02534 0.86113 1.21581 0.93371 1.00354 1.00230 1.20068 0.97959 0.99880 0.93211 1.20751 0.90836 1.02112 1.02719 1.21142 0.92864 0.99729 0.98414 1.21349 0.97549 1.03331 0.97634 1.18700 0.84135 0.99505 0.94288 1.85972 1.18974 1.78716 1.41427 1.23332 0.95821 1.02253 0.85887 0.92615 0.93667 0.91171 0.91953 0.91819 1.00342 0.96058 0.92715 0.92693 0.91633 0.89271 0.74023 0.84236 0.90379 0.89603 0.92723 0.82794 0.82153 0.86575 0.91755 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.56 9.21 71.98 0.66 -5.90 16 2 C 0.06 2.49 5.42 86.30 0.47 2.96 16 3 N -0.53 -23.81 4.35 -879.92 -3.82 -27.63 16 4 C 0.21 10.85 4.14 85.56 0.35 11.21 16 5 C -0.52 -29.99 8.53 25.60 0.22 -29.77 16 6 H 0.06 3.19 6.65 -2.91 -0.02 3.17 16 7 C 0.01 0.48 5.46 84.65 0.46 0.95 16 8 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.07 2.37 2.06 44.17 0.09 2.46 16 14 H 0.07 2.26 6.43 -2.39 -0.02 2.24 16 15 C -0.13 -4.49 8.92 71.98 0.64 -3.84 16 16 C 0.53 18.33 5.89 87.66 0.52 18.84 16 17 O -0.53 -21.81 11.99 -3.09 -0.04 -21.85 16 18 N -0.65 -18.56 5.35 -303.13 -1.62 -20.18 16 19 C 0.11 3.04 6.55 38.18 0.25 3.29 16 20 C -0.14 -4.00 8.48 22.38 0.19 -3.81 16 21 C -0.11 -2.54 5.88 -19.86 -0.12 -2.66 16 22 C -0.11 -1.98 10.01 71.24 0.71 -1.26 16 23 C -0.10 -1.84 9.69 22.28 0.22 -1.62 16 24 C -0.18 -3.17 9.04 22.34 0.20 -2.97 16 25 C 0.08 1.84 6.70 22.60 0.15 1.99 16 26 O -0.34 -6.64 9.83 -93.15 -0.92 -7.55 16 27 C 0.02 0.22 9.81 113.37 1.11 1.33 16 28 H 0.05 1.87 6.31 -2.39 -0.02 1.85 16 29 H 0.04 1.91 6.64 -2.39 -0.02 1.90 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.91 6.45 -2.39 -0.02 2.89 16 32 H 0.06 2.67 6.01 -2.39 -0.01 2.66 16 33 H -0.02 -1.15 6.37 -2.39 -0.02 -1.17 16 34 H 0.02 1.19 6.01 -2.39 -0.01 1.18 16 35 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 2.41 6.28 -2.39 -0.01 2.39 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.42 9.98 8.21 -92.71 -0.76 9.22 16 40 H 0.14 4.92 5.25 -3.88 -0.02 4.90 16 41 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 43 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.16 1.72 6.30 -2.91 -0.02 1.70 16 46 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.55 7.68 -2.39 -0.02 0.53 16 48 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 Total: -1.00 -71.20 376.91 2.26 -68.94 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.21 Total: 24.98 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 6.13 Total: -8.81 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -5.16 Total: -102.81 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.95 Total: -29.40 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.20 2.26 -68.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.041 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds