Wall clock time and date at job start Tue Mar 31 2020 13:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98217 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.01896 * 179.97438 * 5 4 3 7 7 C 1.38883 * 119.97644 * 359.97438 * 6 5 4 8 8 N 1.39950 * 120.01312 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00201 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99725 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99814 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00372 * 0.02562 * 12 10 9 14 14 C 1.53001 * 109.47644 * 89.99364 * 13 12 10 15 15 C 1.46508 * 119.99590 * 180.02562 * 12 10 9 16 16 C 1.50695 * 109.47150 * 90.00477 * 15 12 10 17 17 H 1.08002 * 120.00065 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00095 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00058 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47212 * 60.00216 * 20 18 16 22 22 H 1.48504 * 109.46906 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47091 * 300.00014 * 20 18 16 24 24 C 1.38832 * 119.96873 * 0.02562 * 7 6 5 25 25 C 1.50700 * 120.01385 * 180.02562 * 24 7 6 26 26 C 1.38136 * 119.97713 * 359.74134 * 24 7 6 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.07994 * 119.99207 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.01269 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99395 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46960 * 300.00300 * 9 8 7 36 36 H 1.09009 * 109.46777 * 59.99734 * 9 8 7 37 37 H 1.09004 * 109.46770 * 209.99707 * 13 12 10 38 38 H 1.08997 * 109.46887 * 329.99113 * 13 12 10 39 39 H 1.08997 * 109.46553 * 300.00333 * 14 13 12 40 40 H 1.09005 * 109.46898 * 59.99780 * 14 13 12 41 41 H 1.08993 * 109.46918 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.46813 * 210.00430 * 15 12 10 43 43 H 1.09004 * 109.47022 * 330.00041 * 15 12 10 44 44 H 0.96997 * 120.00182 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.46673 * 89.99956 * 25 24 7 46 46 H 1.08994 * 109.47356 * 209.99662 * 25 24 7 47 47 H 1.09003 * 109.47072 * 330.00389 * 25 24 7 48 48 H 1.07999 * 119.99381 * 180.25296 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4251 0.0005 6 6 5.5684 0.6052 0.0005 7 6 6.0995 1.8884 0.0000 8 7 7.4870 2.0718 -0.0005 9 6 8.3794 0.9100 -0.0011 10 6 9.8122 1.3772 -0.0022 11 8 10.0631 2.5638 -0.0020 12 7 10.8146 0.4764 -0.0024 13 6 10.5115 -0.9569 -0.0020 14 6 10.4054 -1.4562 -1.4444 15 6 12.2075 0.9306 -0.0029 16 6 12.6856 1.0864 1.4177 17 1 12.0185 0.8693 2.2388 18 6 13.9746 1.5062 1.6692 19 7 14.7867 1.7710 0.6692 20 14 14.5670 1.7001 3.4301 21 1 14.4718 0.3944 4.1310 22 1 15.9789 2.1603 3.4295 23 1 13.7210 2.7003 4.1296 24 6 5.2535 2.9892 0.0001 25 6 5.8287 4.3821 -0.0011 26 6 3.8842 2.8072 -0.0048 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7861 -0.5726 -0.0003 33 1 6.2259 -0.2516 0.0001 34 1 7.8576 2.9682 -0.0012 35 1 8.1935 0.3087 0.8888 36 1 8.1928 0.3090 -0.8912 37 1 11.3073 -1.4964 0.5116 38 1 9.5659 -1.1281 0.5123 39 1 9.6096 -0.9167 -1.9579 40 1 11.3511 -1.2849 -1.9587 41 1 10.1803 -2.5227 -1.4440 42 1 12.8286 0.1970 -0.5169 43 1 12.2769 1.8893 -0.5169 44 1 15.6935 2.0667 0.8461 45 1 5.9667 4.7173 -1.0290 46 1 5.1452 5.0579 0.5128 47 1 6.7904 4.3784 0.5120 48 1 3.2258 3.6633 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088524808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:52 Heat of formation + Delta-G solvation = -53.011467 kcal Electronic energy + Delta-G solvation = -26606.399708 eV Core-core repulsion = 22854.443849 eV Total energy + Delta-G solvation = -3751.955859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28903 -39.33671 -38.13647 -35.54827 -34.62885 -32.86710 -32.60692 -31.88822 -30.20294 -29.33202 -27.78446 -26.84564 -25.71397 -23.72143 -23.12014 -22.82195 -21.51214 -20.87913 -18.63563 -17.87347 -17.44524 -16.52836 -16.39974 -16.21386 -15.75712 -15.48530 -15.15368 -14.76721 -14.35689 -14.06394 -13.92523 -13.48993 -13.43198 -13.25669 -13.19308 -13.05308 -12.89955 -12.70890 -12.54127 -12.22737 -12.07710 -11.80786 -11.80128 -11.72225 -11.60395 -11.25910 -11.00603 -10.96559 -10.78369 -10.73168 -10.57680 -10.18890 -9.71932 -9.50689 -9.10476 -8.79654 -8.47712 -7.79352 -7.02484 -6.08946 -4.14053 1.31515 1.66876 3.15455 3.22319 3.29116 3.33722 3.35921 3.40227 3.81909 3.97656 4.40857 4.66237 4.67144 4.80939 4.87797 4.89582 4.97103 5.10873 5.19645 5.21056 5.25649 5.36688 5.40085 5.44443 5.47137 5.49960 5.57778 5.61583 5.66619 5.71808 5.72549 5.88320 5.95736 5.99912 6.16113 6.21352 6.37916 6.40468 6.42470 6.66921 6.94406 7.28934 7.36360 7.44180 7.51148 7.86626 7.91050 8.17172 8.29386 8.79571 8.94933 9.51038 10.99110 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002452 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.172835 B =11415.403310 C =11969.400202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.322 6.322 4 C 0.065 3.935 5 C -0.161 4.161 6 C -0.162 4.162 7 C 0.195 3.805 8 N -0.733 5.733 9 C 0.105 3.895 10 C 0.500 3.500 11 O -0.539 6.539 12 N -0.592 5.592 13 C 0.103 3.897 14 C -0.170 4.170 15 C 0.247 3.753 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.123 4.123 25 C -0.109 4.109 26 C -0.102 4.102 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.044 0.956 44 H 0.264 0.736 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -6.194 -3.291 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.020 3.980 5 C -0.180 4.180 6 C -0.185 4.185 7 C 0.091 3.909 8 N -0.368 5.368 9 C -0.023 4.023 10 C 0.286 3.714 11 O -0.416 6.416 12 N -0.323 5.323 13 C -0.021 4.021 14 C -0.228 4.228 15 C 0.128 3.872 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.128 4.128 25 C -0.166 4.166 26 C -0.121 4.121 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.305 -5.534 -3.336 24.184 hybrid contribution 0.725 -0.087 0.985 1.226 sum -22.580 -5.621 -2.351 23.388 Atomic orbital electron populations 1.21763 0.93136 1.02599 1.03363 1.22666 0.95500 0.82641 1.01074 1.86031 1.19301 1.28442 1.89957 1.18637 0.81977 0.93911 1.03501 1.20913 0.93519 0.97658 1.05950 1.20416 0.94654 0.95323 1.08120 1.17572 0.83535 0.93158 0.96623 1.44544 1.01337 1.08903 1.81978 1.21151 0.89100 0.89620 1.02445 1.20183 0.86618 0.86760 0.77823 1.90658 1.84166 1.16401 1.50417 1.48228 1.08616 1.04929 1.70547 1.21476 1.01593 0.82489 0.96507 1.22228 1.02490 1.00542 0.97577 1.19307 0.73967 0.96390 0.97564 1.21370 0.97250 1.45902 0.92184 0.92516 1.24937 0.96588 0.95084 0.97485 1.69919 1.06997 1.45558 1.30795 0.86548 0.77684 0.78549 0.84581 1.20225 1.21147 1.20179 1.19152 0.91998 0.94643 1.06978 1.20642 1.01114 0.92466 1.02348 1.19982 0.93609 0.94722 1.03825 0.91655 0.90625 0.91652 0.92399 0.92415 0.85916 0.85852 0.74873 0.90024 0.90042 0.89630 0.91661 0.93029 0.91917 0.91982 0.94810 0.93829 0.92610 0.91247 0.91392 0.91457 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.45 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.68 10.14 -19.76 -0.20 -3.88 16 4 C 0.07 0.80 6.69 -39.24 -0.26 0.54 16 5 C -0.16 -1.83 9.03 -39.46 -0.36 -2.19 16 6 C -0.16 -1.99 9.31 -39.40 -0.37 -2.35 16 7 C 0.19 2.66 6.64 -83.69 -0.56 2.11 16 8 N -0.73 -10.97 5.61 -59.76 -0.34 -11.30 16 9 C 0.11 1.55 3.95 -5.20 -0.02 1.53 16 10 C 0.50 9.96 7.74 -10.99 -0.09 9.88 16 11 O -0.54 -12.97 15.25 5.56 0.08 -12.88 16 12 N -0.59 -11.93 2.46 -175.05 -0.43 -12.36 16 13 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 14 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 15 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 16 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C -0.12 -1.58 5.90 -104.44 -0.62 -2.20 16 25 C -0.11 -1.23 9.57 36.01 0.34 -0.89 16 26 C -0.10 -1.25 9.64 -39.46 -0.38 -1.63 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.12 1.11 6.29 -52.49 -0.33 0.78 16 33 H 0.12 1.32 6.73 -52.49 -0.35 0.97 16 34 H 0.41 6.67 5.43 -40.82 -0.22 6.44 16 35 H 0.08 1.09 7.21 -51.93 -0.37 0.71 16 36 H 0.08 1.03 7.00 -51.92 -0.36 0.67 16 37 H 0.09 1.34 8.07 -51.93 -0.42 0.93 16 38 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 39 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 47 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 48 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -32.69 390.82 -8.71 -41.40 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.63 Total: 4.44 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.80 Total: -2.45 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.03 Total: -49.17 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.12 Total: -16.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.69 -8.71 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.608 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds