Wall clock time and date at job start Tue Mar 31 2020 12:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46506 * 109.47203 * 2 1 4 4 C 1.36939 * 119.99684 * 267.95462 * 3 2 1 5 5 H 1.08002 * 120.00411 * 38.84635 * 4 3 2 6 6 C 1.38809 * 119.99685 * 218.84953 * 4 3 2 7 7 N 1.31619 * 120.00253 * 18.98076 * 6 4 3 8 8 Si 1.86803 * 119.99869 * 198.98399 * 6 4 3 9 9 H 1.48501 * 109.47214 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47482 * 119.99911 * 8 6 4 11 11 H 1.48505 * 109.46929 * 239.99814 * 8 6 4 12 12 C 1.46495 * 119.99953 * 87.95018 * 3 2 1 13 13 C 1.50695 * 109.47168 * 270.00154 * 12 3 2 14 14 C 1.38302 * 119.96707 * 270.27828 * 13 12 3 15 15 C 1.38261 * 120.14077 * 180.27901 * 14 13 12 16 16 C 1.38138 * 120.06758 * 359.44366 * 15 14 13 17 17 C 1.38844 * 119.93094 * 0.28059 * 16 15 14 18 18 N 1.39948 * 120.06902 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00066 * 33.31177 * 18 17 16 20 20 O 1.21511 * 120.00267 * 4.74354 * 19 18 17 21 21 O 1.34648 * 119.99994 * 184.74342 * 19 18 17 22 22 C 1.45195 * 117.00010 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47681 * 59.99642 * 22 21 19 24 24 C 1.53007 * 109.47346 * 179.97438 * 22 21 19 25 25 C 1.53005 * 109.47233 * 299.99524 * 22 21 19 26 26 C 1.38094 * 119.96493 * 90.00429 * 13 12 3 27 27 H 1.08996 * 109.47270 * 60.00349 * 1 2 3 28 28 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47144 * 300.00070 * 1 2 3 30 30 H 1.09006 * 109.47730 * 239.99878 * 2 1 3 31 31 H 1.09003 * 109.47476 * 120.00034 * 2 1 3 32 32 H 0.97000 * 120.00041 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46767 * 150.00185 * 12 3 2 34 34 H 1.08996 * 109.47291 * 30.00622 * 12 3 2 35 35 H 1.07998 * 119.92869 * 359.97438 * 14 13 12 36 36 H 1.07994 * 119.96686 * 179.72441 * 15 14 13 37 37 H 1.08004 * 120.03217 * 180.25106 * 16 15 14 38 38 H 0.97004 * 119.99931 * 213.31053 * 18 17 16 39 39 H 1.09004 * 109.46853 * 59.99790 * 23 22 21 40 40 H 1.08994 * 109.47250 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.46809 * 300.00637 * 23 22 21 42 42 H 1.08999 * 109.46919 * 59.99275 * 24 22 21 43 43 H 1.08994 * 109.47394 * 179.97438 * 24 22 21 44 44 H 1.09004 * 109.46743 * 299.99938 * 24 22 21 45 45 H 1.08998 * 109.46606 * 59.99761 * 25 22 21 46 46 H 1.08994 * 109.47616 * 180.02562 * 25 22 21 47 47 H 1.08999 * 109.46902 * 300.00645 * 25 22 21 48 48 H 1.08001 * 120.03341 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2864 2.0126 -1.1852 5 1 1.6414 1.8580 -2.0375 6 6 3.3873 2.8514 -1.2912 7 7 4.3680 2.7638 -0.4176 8 14 3.4771 4.1046 -2.6735 9 1 2.2579 4.0016 -3.5150 10 1 3.5682 5.4706 -2.0983 11 1 4.6770 3.8374 -3.5067 12 6 2.2197 2.0870 1.2679 13 6 0.9501 2.8022 1.6518 14 6 0.7315 4.0992 1.2244 15 6 -0.4294 4.7609 1.5793 16 6 -1.3802 4.1238 2.3529 17 6 -1.1664 2.8198 2.7789 18 7 -2.1274 2.1718 3.5632 19 6 -3.4362 2.4370 3.3809 20 8 -3.7875 3.1722 2.4796 21 8 -4.3546 1.8871 4.1977 22 6 -5.7455 2.2163 3.9422 23 6 -6.1261 1.7630 2.5313 24 6 -6.6343 1.5036 4.9635 25 6 -5.9419 3.7289 4.0622 26 6 0.0035 2.1599 2.4254 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.1371 3.3502 -0.4915 33 1 3.0257 2.8122 1.1559 34 1 2.4819 1.3695 2.0454 35 1 1.4715 4.5980 0.6161 36 1 -0.5952 5.7752 1.2477 37 1 -2.2887 4.6398 2.6265 38 1 -1.8516 1.5318 4.2379 39 1 -5.9862 0.6853 2.4459 40 1 -7.1701 2.0106 2.3394 41 1 -5.4929 2.2703 1.8035 42 1 -6.3633 1.8261 5.9688 43 1 -7.6784 1.7511 4.7719 44 1 -6.4943 0.4260 4.8776 45 1 -5.3087 4.2363 3.3344 46 1 -6.9860 3.9761 3.8708 47 1 -5.6707 4.0519 5.0673 48 1 0.1729 1.1457 2.7556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089892284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:50 Heat of formation + Delta-G solvation = -36.307285 kcal Electronic energy + Delta-G solvation = -27829.924293 eV Core-core repulsion = 24078.692781 eV Total energy + Delta-G solvation = -3751.231512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04880 -39.12331 -37.27253 -35.76402 -34.74519 -33.91574 -31.92213 -31.00220 -29.43223 -28.44300 -27.64999 -27.57408 -25.58911 -23.64383 -23.35558 -21.84982 -20.92307 -20.28570 -19.67539 -18.29474 -17.11105 -16.53908 -16.41187 -16.01514 -15.47523 -14.98335 -14.76964 -14.61381 -14.15637 -13.88109 -13.73306 -13.53142 -13.31558 -12.82272 -12.77699 -12.59100 -12.40069 -12.24276 -12.12466 -12.07991 -11.88248 -11.63787 -11.54648 -11.33622 -11.13724 -11.03937 -10.71905 -10.57380 -10.52487 -10.41588 -10.18215 -10.10825 -9.92796 -9.87124 -9.66011 -8.51954 -8.09281 -7.63777 -6.57449 -5.81006 -3.40578 1.76425 2.02366 2.12220 2.88201 3.33920 3.43346 3.47365 4.04502 4.36660 4.48573 4.50452 4.53408 4.67425 5.22113 5.27968 5.30631 5.31218 5.45003 5.45656 5.53046 5.59521 5.64004 5.64647 5.73858 5.82825 5.88250 6.03309 6.08733 6.09450 6.11343 6.17395 6.30612 6.40701 6.42196 6.55863 6.67253 6.73851 6.77735 6.83643 6.94058 7.11972 7.19560 7.40908 7.45733 7.59931 7.70357 7.82166 8.33951 8.52211 9.17093 9.78158 10.37575 11.18614 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003123 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.851616 B = 8964.450548 C = 9346.680261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.143 3.857 3 N -0.575 5.575 4 C -0.252 4.252 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.174 3.826 13 C -0.050 4.050 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.137 4.137 17 C 0.141 3.859 18 N -0.648 5.648 19 C 0.649 3.351 20 O -0.549 6.549 21 O -0.365 6.365 22 C 0.137 3.863 23 C -0.185 4.185 24 C -0.140 4.140 25 C -0.184 4.184 26 C -0.138 4.138 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.255 0.745 33 H 0.105 0.895 34 H 0.034 0.966 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 -1.143 11.909 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 N -0.294 5.294 4 C -0.382 4.382 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.216 1.216 12 C 0.048 3.952 13 C -0.053 4.053 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.158 4.158 17 C 0.049 3.951 18 N -0.299 5.299 19 C 0.403 3.597 20 O -0.437 6.437 21 O -0.280 6.280 22 C 0.100 3.900 23 C -0.242 4.242 24 C -0.197 4.197 25 C -0.241 4.241 26 C -0.159 4.159 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.349 -0.750 11.495 20.825 hybrid contribution -0.082 0.391 -0.467 0.615 sum -17.431 -0.359 11.027 20.629 Atomic orbital electron populations 1.22475 1.00067 0.98873 1.01900 1.20863 0.91556 0.87017 0.98826 1.43693 1.75817 1.07888 1.02030 1.19047 1.05184 1.23710 0.90222 0.92385 1.25197 0.94409 1.01333 0.97743 1.69961 1.06939 1.38507 1.37532 0.86377 0.77695 0.81596 0.82098 1.20004 1.21247 1.21593 1.20064 0.92259 0.96189 0.86716 1.21099 0.98608 0.93626 0.92003 1.21137 0.97233 0.95043 0.99282 1.20967 0.93957 0.99556 0.98277 1.20853 1.00088 0.93056 1.01801 1.17419 0.88948 0.91837 0.96848 1.42040 1.02192 1.45858 1.39814 1.18037 0.81926 0.79299 0.80461 1.90925 1.79811 1.39631 1.33319 1.86288 1.17716 1.68903 1.55129 1.22075 0.75817 0.95736 0.96382 1.22530 1.03010 1.02162 0.96522 1.21860 0.98307 1.01104 0.98461 1.22525 1.03506 0.94604 1.03498 1.20691 0.94201 0.99120 1.01895 0.93439 0.94832 0.92862 0.93355 0.95133 0.93487 0.87704 0.94778 0.86036 0.86642 0.85845 0.75278 0.92115 0.91150 0.89177 0.91499 0.90138 0.91442 0.89249 0.91133 0.92187 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 10.19 37.15 0.38 -2.93 16 2 C 0.14 3.03 6.43 -4.04 -0.03 3.01 16 3 N -0.58 -13.94 2.40 -174.61 -0.42 -14.36 16 4 C -0.25 -6.73 9.45 -15.06 -0.14 -6.87 16 5 H 0.06 1.59 7.90 -52.49 -0.41 1.18 16 6 C 0.01 0.36 5.00 -17.43 -0.09 0.27 16 7 N -0.89 -24.57 11.41 55.49 0.63 -23.94 16 8 Si 0.89 21.17 29.59 -169.99 -5.03 16.14 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.17 3.93 5.45 -5.20 -0.03 3.90 16 13 C -0.05 -1.00 5.33 -104.65 -0.56 -1.55 16 14 C -0.11 -2.15 9.70 -39.55 -0.38 -2.53 16 15 C -0.11 -1.93 10.04 -39.61 -0.40 -2.33 16 16 C -0.14 -2.38 8.66 -39.39 -0.34 -2.72 16 17 C 0.14 2.34 6.28 -83.69 -0.53 1.82 16 18 N -0.65 -8.98 5.35 -14.27 -0.08 -9.05 16 19 C 0.65 9.41 7.80 54.06 0.42 9.84 16 20 O -0.55 -9.15 9.54 -19.28 -0.18 -9.33 16 21 O -0.37 -4.52 9.94 -40.35 -0.40 -4.92 16 22 C 0.14 1.39 1.13 -90.61 -0.10 1.29 16 23 C -0.19 -1.94 8.37 37.16 0.31 -1.63 16 24 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 25 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 26 C -0.14 -2.41 7.38 -39.39 -0.29 -2.71 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.01 4.96 -51.93 -0.26 0.75 16 30 H 0.05 1.04 8.02 -51.93 -0.42 0.63 16 31 H 0.03 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.11 2.67 5.46 -51.93 -0.28 2.38 16 34 H 0.03 0.72 7.85 -51.93 -0.41 0.32 16 35 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 2.10 6.40 -52.48 -0.34 1.76 16 38 H 0.41 4.49 8.93 -40.82 -0.36 4.13 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.12 1.86 7.60 -52.49 -0.40 1.46 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -29.59 382.51 -8.53 -38.13 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.69 Total: 6.92 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.13 Total: -5.33 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.14 Total: -47.36 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.58 Total: -14.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.59 -8.53 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089892284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.819 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds