Wall clock time and date at job start Tue Mar 31 2020 13:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47232 * 2 1 4 4 C 1.46896 * 110.99907 * 155.11810 * 3 2 1 5 5 C 1.53007 * 109.47097 * 190.00169 * 4 3 2 6 6 C 1.46897 * 111.00217 * 279.07615 * 3 2 1 7 7 H 1.08996 * 109.46982 * 207.35451 * 6 3 2 8 8 C 1.53006 * 109.47029 * 87.35475 * 6 3 2 9 9 N 1.46496 * 109.47276 * 54.05512 * 8 6 3 10 10 C 1.34773 * 119.99923 * 179.97438 * 9 8 6 11 11 O 1.21684 * 120.00287 * 0.02562 * 10 9 8 12 12 C 1.46375 * 120.00000 * 180.02562 * 10 9 8 13 13 H 1.08002 * 119.99852 * 0.02562 * 12 10 9 14 14 C 1.40049 * 120.00391 * 180.02562 * 12 10 9 15 15 N 1.30675 * 119.99386 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00232 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47155 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47348 * 119.99981 * 16 14 12 19 19 H 1.48503 * 109.47114 * 239.99995 * 16 14 12 20 20 C 1.50694 * 109.46921 * 327.35422 * 6 3 2 21 21 C 1.38293 * 119.97665 * 58.98594 * 20 6 3 22 22 C 1.38238 * 120.11287 * 179.72417 * 21 20 6 23 23 C 1.38163 * 120.05585 * 0.54632 * 22 21 20 24 24 C 1.38708 * 119.94335 * 359.72439 * 23 22 21 25 25 O 1.35903 * 120.05408 * 179.97438 * 24 23 22 26 26 C 1.42908 * 116.99979 * 0.02562 * 25 24 23 27 27 C 1.38122 * 119.97116 * 239.25262 * 20 6 3 28 28 H 1.08996 * 109.46942 * 311.03766 * 1 2 3 29 29 H 1.09000 * 109.47144 * 71.04649 * 1 2 3 30 30 H 1.09008 * 109.47026 * 191.04264 * 1 2 3 31 31 H 1.08998 * 109.47415 * 120.00295 * 2 1 3 32 32 H 1.09003 * 109.47296 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.47482 * 310.00422 * 4 3 2 34 34 H 1.09003 * 109.47245 * 70.00436 * 4 3 2 35 35 H 1.09000 * 109.46910 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47161 * 300.00449 * 5 4 3 37 37 H 1.09003 * 109.46855 * 60.00028 * 5 4 3 38 38 H 1.08997 * 109.46692 * 174.06075 * 8 6 3 39 39 H 1.09000 * 109.46845 * 294.05826 * 8 6 3 40 40 H 0.97002 * 119.99666 * 0.02562 * 9 8 6 41 41 H 0.97001 * 119.99477 * 180.02562 * 15 14 12 42 42 H 1.08006 * 119.93400 * 359.97027 * 21 20 6 43 43 H 1.07999 * 119.96820 * 180.24610 * 22 21 20 44 44 H 1.08001 * 120.02366 * 179.70472 * 23 22 21 45 45 H 1.08997 * 109.46808 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47109 * 300.00313 * 26 25 24 47 47 H 1.08997 * 109.46790 * 60.00424 * 26 25 24 48 48 H 1.07994 * 120.02960 * 0.02562 * 27 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3681 1.4665 0.5770 5 6 3.7436 2.9344 0.7904 6 6 1.9913 1.9534 -1.3542 7 1 2.7565 2.7247 -1.4406 8 6 0.6155 2.5678 -1.6206 9 7 0.2944 3.5253 -0.5593 10 6 -0.8757 4.1934 -0.5860 11 8 -1.6657 4.0011 -1.4913 12 6 -1.1963 5.1505 0.4741 13 1 -0.4949 5.3216 1.2774 14 6 -2.4124 5.8445 0.4468 15 7 -3.2608 5.6379 -0.5254 16 14 -2.8218 7.0653 1.8000 17 1 -1.7038 7.1156 2.7761 18 1 -3.0232 8.4120 1.2075 19 1 -4.0641 6.6384 2.4926 20 6 2.2590 0.8651 -2.3615 21 6 1.4265 -0.2373 -2.4254 22 6 1.6662 -1.2346 -3.3522 23 6 2.7451 -1.1376 -4.2097 24 6 3.5849 -0.0356 -4.1439 25 8 4.6472 0.0619 -4.9860 26 6 4.8392 -1.0073 -5.9146 27 6 3.3389 0.9668 -3.2166 28 1 -0.3633 0.6747 0.7751 29 1 -0.3633 0.3338 -0.9719 30 1 -0.3633 -1.0087 0.1969 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.3863 0.9441 1.5334 34 1 4.0831 1.0039 -0.1034 35 1 4.7444 2.9949 1.2182 36 1 3.7254 3.4568 -0.1660 37 1 3.0286 3.3970 1.4708 38 1 0.6270 3.0812 -2.5820 39 1 -0.1371 1.7795 -1.6386 40 1 0.9244 3.6789 0.1621 41 1 -4.1029 6.1188 -0.5445 42 1 0.5854 -0.3172 -1.7526 43 1 1.0122 -2.0926 -3.4027 44 1 2.9346 -1.9194 -4.9304 45 1 5.7189 -0.8044 -6.5253 46 1 4.9819 -1.9405 -5.3698 47 1 3.9629 -1.0921 -6.5572 48 1 3.9915 1.8256 -3.1633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153528939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:45 Heat of formation + Delta-G solvation = 1.308275 kcal Electronic energy + Delta-G solvation = -28151.099868 eV Core-core repulsion = 24401.499490 eV Total energy + Delta-G solvation = -3749.600379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93685 -39.27721 -37.02574 -36.43105 -33.26359 -32.84276 -32.25620 -31.52222 -30.01671 -28.90897 -27.54081 -27.36391 -25.74634 -22.92833 -22.88903 -21.99505 -21.81333 -19.91535 -19.36343 -17.76929 -17.10675 -16.83902 -16.44146 -15.90430 -15.73685 -15.24921 -15.14142 -14.45642 -14.22683 -13.87406 -13.70478 -13.54975 -13.43743 -13.21180 -13.04086 -12.75478 -12.68865 -12.17775 -12.05772 -11.90961 -11.60532 -11.59849 -11.37974 -11.15116 -11.06491 -10.97583 -10.90639 -10.78303 -10.72075 -10.46652 -10.32008 -10.14022 -10.08648 -8.91269 -8.74920 -8.32954 -7.83304 -7.45325 -7.22220 -6.06745 -4.50102 1.23121 1.40162 3.11396 3.19510 3.27606 3.32233 3.64728 4.01030 4.20335 4.60792 4.69839 4.72411 4.87574 4.90115 4.96457 5.02747 5.06464 5.18028 5.20990 5.30361 5.34514 5.41041 5.53242 5.57017 5.60117 5.63633 5.72665 5.80215 5.86670 5.92782 5.96740 6.00291 6.11942 6.13726 6.21717 6.34482 6.42089 6.51791 6.54668 6.59721 6.66952 6.84120 7.23461 7.27689 7.30151 7.55046 8.14082 8.33017 8.50334 9.15110 9.77014 10.73655 10.95231 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003276 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.748112 B = 8545.379298 C = 8918.220712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.009 3.991 3 N -0.512 5.512 4 C 0.050 3.950 5 C -0.153 4.153 6 C 0.107 3.893 7 H 0.091 0.909 8 C 0.148 3.852 9 N -0.752 5.752 10 C 0.556 3.444 11 O -0.586 6.586 12 C -0.543 4.543 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.770 5.770 16 Si 0.904 3.096 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.075 4.075 21 C -0.156 4.156 22 C -0.095 4.095 23 C -0.205 4.205 24 C 0.114 3.886 25 O -0.320 6.320 26 C 0.029 3.971 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.385 0.615 41 H 0.265 0.735 42 H 0.162 0.838 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.897 -14.817 -3.434 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.118 4.118 3 N -0.235 5.235 4 C -0.078 4.078 5 C -0.210 4.210 6 C -0.001 4.001 7 H 0.109 0.891 8 C 0.022 3.978 9 N -0.407 5.407 10 C 0.360 3.640 11 O -0.469 6.469 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.400 5.400 16 Si 0.729 3.271 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.077 4.077 21 C -0.174 4.174 22 C -0.113 4.113 23 C -0.224 4.224 24 C 0.069 3.931 25 O -0.234 6.234 26 C -0.066 4.066 27 C -0.155 4.155 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.217 0.783 41 H 0.076 0.924 42 H 0.178 0.822 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.116 0.884 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.970 -14.476 -3.882 21.183 hybrid contribution 0.648 -0.125 0.314 0.731 sum 15.618 -14.600 -3.568 21.676 Atomic orbital electron populations 1.22110 0.94760 1.01446 1.03605 1.23295 0.96632 0.89483 1.02391 1.62424 1.22818 1.19467 1.18781 1.22128 0.88994 0.97718 0.98971 1.21879 1.00967 0.95737 1.02461 1.21174 0.99983 0.93857 0.85112 0.89116 1.20963 0.92094 0.92719 0.92063 1.45863 1.22367 1.45162 1.27322 1.18170 0.79014 0.80384 0.86463 1.90588 1.49043 1.68574 1.38734 1.20912 1.03598 1.24028 1.09480 0.91575 1.25691 0.95675 0.96239 0.95529 1.70048 1.06818 1.34734 1.28368 0.86383 0.78854 0.80376 0.81501 1.18834 1.20324 1.20315 1.20224 0.94100 0.97030 0.96359 1.22101 1.01972 0.94381 0.98928 1.20929 0.96686 0.99266 0.94457 1.21201 0.98538 0.98981 1.03710 1.18940 0.87830 0.94747 0.91541 1.86061 1.44823 1.45668 1.46801 1.23010 1.02328 0.89618 0.91659 1.20321 0.99612 0.98916 0.96615 0.90487 0.90756 0.92782 0.91706 0.90114 0.90956 0.95228 0.92585 0.92447 0.91215 0.93524 0.92659 0.78298 0.92411 0.82174 0.85800 0.85882 0.88437 0.92879 0.92724 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.29 37.16 0.31 -1.96 16 2 C 0.01 0.11 5.14 -3.82 -0.02 0.09 16 3 N -0.51 -7.07 3.69 -228.04 -0.84 -7.91 16 4 C 0.05 0.58 5.58 -3.82 -0.02 0.56 16 5 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 6 C 0.11 1.60 2.02 -68.87 -0.14 1.46 16 7 H 0.09 1.32 5.54 -51.93 -0.29 1.03 16 8 C 0.15 2.90 4.83 -4.04 -0.02 2.88 16 9 N -0.75 -17.04 5.38 -61.72 -0.33 -17.38 16 10 C 0.56 16.04 7.75 -12.99 -0.10 15.94 16 11 O -0.59 -19.27 15.02 5.20 0.08 -19.20 16 12 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 13 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 15 N -0.77 -23.54 11.83 55.55 0.66 -22.88 16 16 Si 0.90 20.57 29.56 -169.99 -5.02 15.54 16 17 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.07 -1.04 4.42 -104.65 -0.46 -1.50 16 21 C -0.16 -2.05 6.02 -39.56 -0.24 -2.29 16 22 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 23 C -0.21 -2.32 9.04 -39.44 -0.36 -2.68 16 24 C 0.11 1.45 6.69 -39.22 -0.26 1.19 16 25 O -0.32 -3.78 10.50 -19.43 -0.20 -3.98 16 26 C 0.03 0.22 9.81 101.05 0.99 1.21 16 27 C -0.14 -1.83 9.61 -39.43 -0.38 -2.21 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.16 3.72 -51.93 -0.19 0.97 16 30 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 32 H 0.08 1.01 3.34 -93.48 -0.31 0.70 16 33 H 0.07 0.79 7.80 -51.93 -0.40 0.38 16 34 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.69 6.26 -51.93 -0.33 0.36 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.14 4.76 -51.93 -0.25 0.90 16 40 H 0.38 7.96 8.08 -40.82 -0.33 7.63 16 41 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 42 H 0.16 2.11 2.56 -52.48 -0.13 1.98 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 47 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 48 H 0.13 1.62 7.94 -52.49 -0.42 1.20 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -35.14 371.91 -8.33 -43.47 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.10 Total: 10.46 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.16 Total: -3.72 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.52 Total: -48.17 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.13 Total: -23.17 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.14 -8.33 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153528939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.774 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds