Wall clock time and date at job start Tue Mar 31 2020 13:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47232 * 2 1 4 4 C 1.46896 * 110.99907 * 155.11810 * 3 2 1 5 5 C 1.53007 * 109.47097 * 190.00169 * 4 3 2 6 6 C 1.46897 * 111.00217 * 279.07615 * 3 2 1 7 7 H 1.08996 * 109.46982 * 207.35451 * 6 3 2 8 8 C 1.53006 * 109.47029 * 87.35475 * 6 3 2 9 9 N 1.46496 * 109.47276 * 54.05512 * 8 6 3 10 10 C 1.34773 * 119.99923 * 179.97438 * 9 8 6 11 11 O 1.21684 * 120.00287 * 0.02562 * 10 9 8 12 12 C 1.46375 * 120.00000 * 180.02562 * 10 9 8 13 13 H 1.08002 * 119.99852 * 0.02562 * 12 10 9 14 14 C 1.40049 * 120.00391 * 180.02562 * 12 10 9 15 15 N 1.30675 * 119.99386 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00232 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47155 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47348 * 119.99981 * 16 14 12 19 19 H 1.48503 * 109.47114 * 239.99995 * 16 14 12 20 20 C 1.50694 * 109.46921 * 327.35422 * 6 3 2 21 21 C 1.38293 * 119.97665 * 58.98594 * 20 6 3 22 22 C 1.38238 * 120.11287 * 179.72417 * 21 20 6 23 23 C 1.38163 * 120.05585 * 0.54632 * 22 21 20 24 24 C 1.38708 * 119.94335 * 359.72439 * 23 22 21 25 25 O 1.35903 * 120.05408 * 179.97438 * 24 23 22 26 26 C 1.42908 * 116.99979 * 0.02562 * 25 24 23 27 27 C 1.38122 * 119.97116 * 239.25262 * 20 6 3 28 28 H 1.08996 * 109.46942 * 311.03766 * 1 2 3 29 29 H 1.09000 * 109.47144 * 71.04649 * 1 2 3 30 30 H 1.09008 * 109.47026 * 191.04264 * 1 2 3 31 31 H 1.08998 * 109.47415 * 120.00295 * 2 1 3 32 32 H 1.09003 * 109.47296 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.47482 * 310.00422 * 4 3 2 34 34 H 1.09003 * 109.47245 * 70.00436 * 4 3 2 35 35 H 1.09000 * 109.46910 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47161 * 300.00449 * 5 4 3 37 37 H 1.09003 * 109.46855 * 60.00028 * 5 4 3 38 38 H 1.08997 * 109.46692 * 174.06075 * 8 6 3 39 39 H 1.09000 * 109.46845 * 294.05826 * 8 6 3 40 40 H 0.97002 * 119.99666 * 0.02562 * 9 8 6 41 41 H 0.97001 * 119.99477 * 180.02562 * 15 14 12 42 42 H 1.08006 * 119.93400 * 359.97027 * 21 20 6 43 43 H 1.07999 * 119.96820 * 180.24610 * 22 21 20 44 44 H 1.08001 * 120.02366 * 179.70472 * 23 22 21 45 45 H 1.08997 * 109.46808 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47109 * 300.00313 * 26 25 24 47 47 H 1.08997 * 109.46790 * 60.00424 * 26 25 24 48 48 H 1.07994 * 120.02960 * 0.02562 * 27 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3681 1.4665 0.5770 5 6 3.7436 2.9344 0.7904 6 6 1.9913 1.9534 -1.3542 7 1 2.7565 2.7247 -1.4406 8 6 0.6155 2.5678 -1.6206 9 7 0.2944 3.5253 -0.5593 10 6 -0.8757 4.1934 -0.5860 11 8 -1.6657 4.0011 -1.4913 12 6 -1.1963 5.1505 0.4741 13 1 -0.4949 5.3216 1.2774 14 6 -2.4124 5.8445 0.4468 15 7 -3.2608 5.6379 -0.5254 16 14 -2.8218 7.0653 1.8000 17 1 -1.7038 7.1156 2.7761 18 1 -3.0232 8.4120 1.2075 19 1 -4.0641 6.6384 2.4926 20 6 2.2590 0.8651 -2.3615 21 6 1.4265 -0.2373 -2.4254 22 6 1.6662 -1.2346 -3.3522 23 6 2.7451 -1.1376 -4.2097 24 6 3.5849 -0.0356 -4.1439 25 8 4.6472 0.0619 -4.9860 26 6 4.8392 -1.0073 -5.9146 27 6 3.3389 0.9668 -3.2166 28 1 -0.3633 0.6747 0.7751 29 1 -0.3633 0.3338 -0.9719 30 1 -0.3633 -1.0087 0.1969 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.3863 0.9441 1.5334 34 1 4.0831 1.0039 -0.1034 35 1 4.7444 2.9949 1.2182 36 1 3.7254 3.4568 -0.1660 37 1 3.0286 3.3970 1.4708 38 1 0.6270 3.0812 -2.5820 39 1 -0.1371 1.7795 -1.6386 40 1 0.9244 3.6789 0.1621 41 1 -4.1029 6.1188 -0.5445 42 1 0.5854 -0.3172 -1.7526 43 1 1.0122 -2.0926 -3.4027 44 1 2.9346 -1.9194 -4.9304 45 1 5.7189 -0.8044 -6.5253 46 1 4.9819 -1.9405 -5.3698 47 1 3.9629 -1.0921 -6.5572 48 1 3.9915 1.8256 -3.1633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153528939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:44 Heat of formation + Delta-G solvation = -23.558804 kcal Electronic energy + Delta-G solvation = -28152.178186 eV Core-core repulsion = 24401.499490 eV Total energy + Delta-G solvation = -3750.678696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97279 -40.25307 -39.01394 -37.51595 -35.09783 -34.33438 -33.85541 -32.82355 -31.03385 -30.02703 -29.13325 -28.08164 -27.57858 -24.31824 -23.89780 -22.98414 -22.83491 -21.57666 -20.84002 -19.27274 -18.48344 -17.98188 -17.45373 -17.32491 -16.84070 -16.63922 -16.40842 -15.94985 -15.42469 -15.26876 -15.15281 -14.90427 -14.54429 -14.40106 -14.22464 -13.97014 -13.79855 -13.61879 -13.44216 -13.05401 -12.92441 -12.75689 -12.73642 -12.66225 -12.52092 -12.44137 -12.07086 -12.02567 -11.94511 -11.89709 -11.70597 -11.43659 -11.42005 -10.89432 -9.93399 -9.75281 -9.36617 -9.24650 -8.82554 -8.22836 -6.77266 0.25668 0.43567 1.41762 1.42134 1.59818 2.27904 2.34174 2.54487 2.66304 2.92843 3.28106 3.70928 3.80682 3.81230 3.95369 4.04552 4.10847 4.20592 4.23824 4.29508 4.38752 4.39506 4.45939 4.50153 4.53711 4.66048 4.67812 4.71557 4.73451 4.82692 4.84997 4.93130 4.99965 5.07829 5.16566 5.18151 5.28147 5.37604 5.39969 5.45842 5.52481 5.57924 5.75061 5.97519 6.10667 6.24504 6.35669 6.44455 6.44806 6.93541 7.71784 8.59102 8.76432 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.003276 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.748112 B = 8545.379298 C = 8918.220712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.012 3.988 3 N -0.528 5.528 4 C 0.053 3.947 5 C -0.151 4.151 6 C 0.124 3.876 7 H 0.093 0.907 8 C 0.151 3.849 9 N -0.735 5.735 10 C 0.540 3.460 11 O -0.637 6.637 12 C -0.570 4.570 13 H 0.083 0.917 14 C 0.028 3.972 15 N -0.823 5.823 16 Si 0.996 3.004 17 H -0.248 1.248 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.086 4.086 21 C -0.170 4.170 22 C -0.093 4.093 23 C -0.201 4.201 24 C 0.108 3.892 25 O -0.338 6.338 26 C 0.019 3.981 27 C -0.150 4.150 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.045 0.955 40 H 0.396 0.604 41 H 0.272 0.728 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.117 0.883 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.568 -15.961 -2.484 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.115 4.115 3 N -0.251 5.251 4 C -0.075 4.075 5 C -0.208 4.208 6 C 0.016 3.984 7 H 0.111 0.889 8 C 0.025 3.975 9 N -0.388 5.388 10 C 0.344 3.656 11 O -0.525 6.525 12 C -0.607 4.607 13 H 0.101 0.899 14 C -0.186 4.186 15 N -0.453 5.453 16 Si 0.815 3.185 17 H -0.171 1.171 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.088 4.088 21 C -0.188 4.188 22 C -0.111 4.111 23 C -0.219 4.219 24 C 0.063 3.937 25 O -0.252 6.252 26 C -0.075 4.075 27 C -0.170 4.170 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.174 0.826 43 H 0.168 0.832 44 H 0.170 0.830 45 H 0.136 0.864 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.712 -15.650 -2.918 23.081 hybrid contribution 0.194 0.135 -0.092 0.253 sum 16.906 -15.515 -3.010 23.143 Atomic orbital electron populations 1.22048 0.96041 1.02018 1.01218 1.23302 0.95398 0.89095 1.03658 1.62351 1.24492 1.20343 1.17919 1.22167 0.87763 0.98032 0.99497 1.21869 1.01879 0.95392 1.01696 1.20784 0.96489 0.94462 0.86673 0.88915 1.21007 0.95060 0.91512 0.89891 1.45512 1.20783 1.44542 1.28012 1.18556 0.79996 0.80941 0.86138 1.90539 1.51103 1.70317 1.40543 1.21413 1.04747 1.24540 1.10013 0.89891 1.26943 0.94990 0.98264 0.98419 1.70215 1.07654 1.36359 1.31108 0.85007 0.79084 0.76879 0.77507 1.17070 1.19420 1.19393 1.20053 0.95043 0.97046 0.96662 1.22147 1.01880 0.94881 0.99874 1.21247 0.96927 0.99416 0.93482 1.21525 0.97666 0.99046 1.03710 1.19064 0.88357 0.94828 0.91452 1.86042 1.44379 1.47549 1.47225 1.23333 1.03634 0.89197 0.91370 1.20380 0.99813 0.99581 0.97209 0.93592 0.92819 0.90237 0.89935 0.89178 0.89540 0.94588 0.90367 0.93446 0.92566 0.96126 0.93719 0.77009 0.91797 0.82578 0.83184 0.83043 0.86436 0.91449 0.91951 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 8.29 71.98 0.60 -3.84 16 2 C 0.01 0.29 5.14 86.30 0.44 0.73 16 3 N -0.53 -14.46 3.69 -875.38 -3.23 -17.70 16 4 C 0.05 1.16 5.58 86.31 0.48 1.64 16 5 C -0.15 -3.30 9.89 71.98 0.71 -2.59 16 6 C 0.12 3.82 2.02 44.17 0.09 3.91 16 7 H 0.09 2.78 5.54 -2.39 -0.01 2.76 16 8 C 0.15 6.28 4.83 86.38 0.42 6.70 16 9 N -0.73 -34.81 5.38 -467.42 -2.51 -37.32 16 10 C 0.54 32.54 7.75 86.36 0.67 33.21 16 11 O -0.64 -44.22 15.02 -4.30 -0.06 -44.29 16 12 C -0.57 -33.46 9.54 24.83 0.24 -33.22 16 13 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 14 C 0.03 1.63 5.50 85.30 0.47 2.10 16 15 N -0.82 -51.86 11.83 21.84 0.26 -51.60 16 16 Si 1.00 42.29 29.56 68.60 2.03 44.32 16 17 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 C -0.09 -2.39 4.42 -19.88 -0.09 -2.48 16 21 C -0.17 -4.38 6.02 22.28 0.13 -4.24 16 22 C -0.09 -1.96 10.04 22.25 0.22 -1.74 16 23 C -0.20 -4.06 9.04 22.36 0.20 -3.86 16 24 C 0.11 2.60 6.69 22.51 0.15 2.75 16 25 O -0.34 -7.44 10.50 -92.45 -0.97 -8.41 16 26 C 0.02 0.23 9.81 113.37 1.11 1.35 16 27 C -0.15 -4.03 9.61 22.37 0.21 -3.81 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.76 3.72 -2.39 -0.01 1.75 16 30 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.08 1.74 7.64 -2.39 -0.02 1.72 16 32 H 0.09 2.14 3.34 -41.41 -0.14 2.00 16 33 H 0.09 1.69 7.80 -2.39 -0.02 1.67 16 34 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.12 6.26 -2.39 -0.01 1.11 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 1.98 4.76 -2.39 -0.01 1.96 16 40 H 0.40 16.85 8.08 -92.71 -0.75 16.10 16 41 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 42 H 0.16 4.13 2.56 -2.91 -0.01 4.12 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 45 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 47 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 48 H 0.13 3.27 7.94 -2.91 -0.02 3.24 16 Total: -1.00 -79.81 371.91 1.68 -78.13 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.11 Total: 40.26 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.07 Total: -3.40 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.49 Total: -106.62 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -1.04 Total: -52.70 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -79.81 1.68 -78.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153528939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.571 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds