Wall clock time and date at job start Tue Mar 31 2020 12:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00337 * 2 1 4 4 C 1.38728 * 120.05555 * 180.02562 * 3 2 1 5 5 C 1.38153 * 119.94024 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.05657 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94352 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46875 * 90.00337 * 7 6 5 9 9 C 1.46500 * 119.99685 * 269.99810 * 8 7 6 10 10 C 1.34768 * 120.00072 * 90.00386 * 8 7 6 11 11 O 1.21273 * 120.00440 * 359.97438 * 10 8 7 12 12 C 1.50706 * 119.99753 * 179.97438 * 10 8 7 13 13 N 1.46906 * 109.46929 * 179.97438 * 12 10 8 14 14 C 1.46898 * 110.99888 * 66.04676 * 13 12 10 15 15 C 1.46902 * 110.99573 * 190.00042 * 13 12 10 16 16 H 1.09005 * 109.47428 * 55.00152 * 15 13 12 17 17 C 1.52998 * 109.47449 * 294.99873 * 15 13 12 18 18 C 1.50700 * 109.46520 * 174.99924 * 15 13 12 19 19 H 1.07997 * 120.00735 * 359.97438 * 18 15 13 20 20 C 1.37887 * 119.99903 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99537 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00159 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46664 * 90.00277 * 22 20 18 24 24 H 1.48494 * 109.47037 * 209.99998 * 22 20 18 25 25 H 1.48494 * 109.47236 * 330.00472 * 22 20 18 26 26 C 1.38269 * 120.11337 * 0.24987 * 6 5 4 27 27 C 1.38143 * 120.05607 * 359.45414 * 26 6 5 28 28 H 1.09001 * 109.46575 * 299.99903 * 1 2 3 29 29 H 1.08998 * 109.47415 * 59.99611 * 1 2 3 30 30 H 1.09000 * 109.47586 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03098 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96808 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47474 * 330.00131 * 7 6 5 34 34 H 1.09001 * 109.47690 * 210.00076 * 7 6 5 35 35 H 1.09000 * 109.47543 * 270.00395 * 9 8 7 36 36 H 1.09000 * 109.47126 * 29.99947 * 9 8 7 37 37 H 1.08996 * 109.47279 * 150.00094 * 9 8 7 38 38 H 1.08998 * 109.46946 * 59.99907 * 12 10 8 39 39 H 1.09000 * 109.47319 * 299.99706 * 12 10 8 40 40 H 1.08997 * 109.47334 * 60.00212 * 14 13 12 41 41 H 1.09000 * 109.46674 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.47296 * 299.99911 * 14 13 12 43 43 H 1.08999 * 109.47381 * 180.02562 * 17 15 13 44 44 H 1.09005 * 109.47033 * 300.00521 * 17 15 13 45 45 H 1.08995 * 109.47107 * 59.99993 * 17 15 13 46 46 H 0.97005 * 119.99442 * 180.02562 * 21 20 18 47 47 H 1.08002 * 119.97394 * 179.70566 * 26 6 5 48 48 H 1.07994 * 120.03329 * 180.25115 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 7 4.2072 5.4550 -1.3781 9 6 5.4482 5.0973 -2.0697 10 6 3.2690 6.1858 -2.0121 11 8 2.2415 6.4816 -1.4398 12 6 3.4967 6.6353 -3.4325 13 7 2.3362 7.4096 -3.8929 14 6 2.2116 8.6671 -3.1440 15 6 2.4121 7.6627 -5.3380 16 1 2.5226 6.7162 -5.8674 17 6 3.6167 8.5575 -5.6365 18 6 1.1508 8.3494 -5.7945 19 1 0.3706 8.5748 -5.0826 20 6 0.9927 8.6899 -7.1213 21 7 1.9426 8.4149 -7.9884 22 14 -0.5711 9.5404 -7.6874 23 1 -0.3980 11.0120 -7.5876 24 1 -0.8535 9.1698 -9.0973 25 1 -1.7046 9.1159 -6.8273 26 6 1.9212 3.6047 0.0079 27 6 1.2915 2.3751 0.0012 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0209 0.3798 -0.0014 32 1 5.1346 2.5749 0.0000 33 1 4.9444 4.9375 0.5160 34 1 3.3585 5.7457 0.5177 35 1 6.1960 5.8714 -1.8979 36 1 5.8161 4.1454 -1.6867 37 1 5.2558 5.0088 -3.1389 38 1 3.6285 5.7632 -4.0729 39 1 4.3903 7.2578 -3.4777 40 1 3.1107 9.2662 -3.2877 41 1 1.3444 9.2203 -3.5046 42 1 2.0869 8.4477 -2.0837 43 1 3.6728 8.7457 -6.7086 44 1 3.5063 9.5040 -5.1071 45 1 4.5290 8.0609 -5.3062 46 1 1.8315 8.6548 -8.9217 47 1 1.3343 4.5113 0.0139 48 1 0.2130 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161996516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:33 Heat of formation + Delta-G solvation = -46.088565 kcal Electronic energy + Delta-G solvation = -27280.570141 eV Core-core repulsion = 23528.914482 eV Total energy + Delta-G solvation = -3751.655660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34665 -40.76343 -38.87159 -38.15696 -36.34842 -34.69944 -32.47766 -31.98306 -30.86393 -29.29233 -28.57719 -27.61320 -27.23932 -26.49054 -25.11326 -23.54948 -22.39023 -21.31992 -19.96099 -19.11538 -18.37320 -17.98261 -17.16636 -17.13468 -17.03749 -16.66416 -16.58125 -16.05818 -15.84255 -15.34204 -15.22547 -14.77783 -14.65706 -14.39757 -14.34532 -14.07552 -13.82668 -13.53582 -13.41355 -13.21432 -12.95063 -12.88709 -12.79847 -12.74369 -12.62802 -12.56398 -12.40593 -12.20373 -12.01755 -11.99075 -11.87659 -11.70883 -10.96825 -10.59286 -10.48857 -9.95804 -9.62582 -9.10996 -8.82763 -8.11606 -6.21149 0.35076 0.39735 1.41382 1.42451 1.53450 1.71821 2.08027 2.35551 2.43760 2.85683 3.17695 3.44441 3.70661 3.86507 3.91072 3.96795 4.21138 4.29724 4.32994 4.35033 4.38795 4.42857 4.45371 4.58637 4.61634 4.68332 4.71602 4.73781 4.75078 4.83807 4.86707 4.91725 5.00181 5.08803 5.13072 5.23601 5.28995 5.39719 5.52260 5.61319 5.68709 5.70805 5.80112 5.81097 6.16499 6.38587 6.40384 6.47061 6.72959 6.91060 7.32523 7.47603 8.94601 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002934 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.039193 B = 9541.445192 C =10597.228790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.163 4.163 5 C -0.059 4.059 6 C -0.149 4.149 7 C 0.161 3.839 8 N -0.612 5.612 9 C 0.070 3.930 10 C 0.515 3.485 11 O -0.557 6.557 12 C 0.041 3.959 13 N -0.538 5.538 14 C 0.045 3.955 15 C 0.217 3.783 16 H 0.011 0.989 17 C -0.158 4.158 18 C -0.518 4.518 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.275 1.275 26 C -0.074 4.074 27 C -0.221 4.221 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.029 0.971 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -14.255 17.650 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.182 4.182 5 C -0.077 4.077 6 C -0.150 4.150 7 C 0.040 3.960 8 N -0.346 5.346 9 C -0.072 4.072 10 C 0.304 3.696 11 O -0.434 6.434 12 C -0.090 4.090 13 N -0.262 5.262 14 C -0.104 4.104 15 C 0.110 3.890 16 H 0.029 0.971 17 C -0.217 4.217 18 C -0.556 4.556 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.557 5.557 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.206 1.206 25 H -0.200 1.200 26 C -0.093 4.093 27 C -0.240 4.240 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.181 0.819 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.127 0.873 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.596 -14.550 17.849 24.249 hybrid contribution -0.745 1.143 -0.926 1.649 sum 6.851 -13.407 16.923 22.651 Atomic orbital electron populations 1.23292 0.76852 1.05525 1.01809 1.86023 1.23095 1.26824 1.88699 1.19314 0.93210 0.84121 0.96451 1.20724 0.91054 0.99720 1.06670 1.21155 1.01085 0.89820 0.95655 1.20277 0.93411 0.96490 1.04871 1.20352 1.01784 0.91524 0.82369 1.48003 1.19287 1.52832 1.14433 1.22083 0.84666 1.02653 0.97800 1.20811 0.82897 0.77592 0.88341 1.90593 1.27929 1.56905 1.67999 1.21977 0.94153 0.99622 0.93274 1.61919 1.38732 1.19972 1.05556 1.22193 0.99645 0.90556 0.97959 1.19109 0.93789 0.93830 0.82265 0.97094 1.22200 0.97318 0.99129 1.03079 1.21364 1.02666 1.37990 0.93621 0.93192 1.25617 0.99464 0.96645 0.96646 1.69990 1.34094 1.48516 1.03119 0.85582 0.80051 0.78805 0.77350 1.20027 1.20610 1.19982 1.21044 0.95284 0.96905 0.96022 1.21375 1.00684 0.92424 1.09509 0.91919 0.92788 0.85894 0.83483 0.81923 0.86039 0.91122 0.90679 0.88386 0.91310 0.88493 0.91240 0.96412 0.93046 0.91513 0.91748 0.95172 0.94669 0.92869 0.87278 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.19 10.50 -92.41 -0.97 -8.16 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.16 -3.18 9.99 22.37 0.22 -2.96 16 5 C -0.06 -1.01 9.69 22.25 0.22 -0.80 16 6 C -0.15 -3.28 5.46 -19.85 -0.11 -3.39 16 7 C 0.16 3.25 5.53 85.63 0.47 3.73 16 8 N -0.61 -14.30 2.86 -851.15 -2.43 -16.74 16 9 C 0.07 1.06 10.24 127.77 1.31 2.37 16 10 C 0.52 17.19 7.40 87.66 0.65 17.84 16 11 O -0.56 -22.62 13.43 -3.01 -0.04 -22.66 16 12 C 0.04 1.46 3.44 85.56 0.29 1.75 16 13 N -0.54 -24.56 4.48 -906.03 -4.06 -28.62 16 14 C 0.04 1.94 8.44 127.69 1.08 3.02 16 15 C 0.22 11.16 2.34 44.17 0.10 11.26 16 16 H 0.01 0.63 8.03 -2.38 -0.02 0.61 16 17 C -0.16 -7.50 8.28 71.98 0.60 -6.90 16 18 C -0.52 -29.45 7.88 25.60 0.20 -29.25 16 19 H 0.05 2.92 6.77 -2.91 -0.02 2.90 16 20 C 0.01 0.84 5.30 84.66 0.45 1.29 16 21 N -0.92 -52.62 11.32 21.45 0.24 -52.37 16 22 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 C -0.07 -1.99 9.69 22.25 0.22 -1.78 16 27 C -0.22 -5.51 9.04 22.37 0.20 -5.31 16 28 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 29 H 0.05 0.84 7.66 -2.39 -0.02 0.82 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.12 1.47 8.01 -2.39 -0.02 1.45 16 34 H 0.07 1.72 7.36 -2.39 -0.02 1.71 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 37 H 0.07 1.16 6.44 -2.39 -0.02 1.14 16 38 H 0.10 3.34 7.26 -2.39 -0.02 3.32 16 39 H 0.07 2.24 6.90 -2.39 -0.02 2.22 16 40 H 0.02 0.72 6.51 -2.39 -0.02 0.70 16 41 H 0.05 2.42 6.42 -2.39 -0.02 2.40 16 42 H 0.07 2.82 5.88 -2.39 -0.01 2.81 16 43 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 44 H 0.03 1.40 6.48 -2.38 -0.02 1.38 16 45 H 0.03 1.42 6.75 -2.39 -0.02 1.40 16 46 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 47 H 0.11 3.40 7.60 -2.91 -0.02 3.38 16 48 H 0.13 2.94 6.30 -2.91 -0.02 2.92 16 Total: -1.00 -71.93 379.55 2.89 -69.05 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.95 Total: 17.65 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 7.16 Total: -4.91 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -6.25 Total: -97.72 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.01 Total: -30.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.93 2.89 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161996516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.959 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds