Wall clock time and date at job start Tue Mar 31 2020 12:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35971 * 116.99759 * 2 1 4 4 C 1.38549 * 120.08309 * 0.28367 * 3 2 1 5 5 C 1.38248 * 120.01162 * 180.29549 * 4 3 2 6 6 C 1.38277 * 120.18117 * 359.71845 * 5 4 3 7 7 C 1.38198 * 120.16402 * 359.97438 * 6 5 4 8 8 C 1.38723 * 119.98181 * 0.02562 * 7 6 5 9 9 N 1.40125 * 120.08613 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00485 * 34.61076 * 9 8 7 11 11 O 1.21293 * 119.99643 * 355.83727 * 10 9 8 12 12 C 1.50694 * 120.00450 * 175.55699 * 10 9 8 13 13 C 1.52994 * 109.47372 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47131 * 55.00869 * 13 12 10 15 15 C 1.53000 * 109.47304 * 175.00156 * 13 12 10 16 16 N 1.46900 * 109.47669 * 295.00299 * 13 12 10 17 17 C 1.46894 * 111.00100 * 154.99439 * 16 13 12 18 18 C 1.53004 * 109.47085 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.47099 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46700 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99837 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47220 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47008 * 120.00036 * 24 22 20 27 27 H 1.48499 * 109.46689 * 239.99761 * 24 22 20 28 28 H 1.09008 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46920 * 299.99051 * 1 2 3 30 30 H 1.08997 * 109.47225 * 59.99757 * 1 2 3 31 31 H 1.07997 * 119.99712 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.91156 * 179.74333 * 5 4 3 33 33 H 1.08004 * 119.92041 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.01178 * 180.02562 * 7 6 5 35 35 H 0.97006 * 119.99871 * 214.60544 * 9 8 7 36 36 H 1.08998 * 109.47741 * 300.00357 * 12 10 9 37 37 H 1.09003 * 109.46864 * 60.00041 * 12 10 9 38 38 H 1.08998 * 109.47295 * 180.02562 * 15 13 12 39 39 H 1.09006 * 109.47433 * 300.00574 * 15 13 12 40 40 H 1.08999 * 109.47114 * 60.00024 * 15 13 12 41 41 H 1.00900 * 111.00160 * 278.95405 * 16 13 12 42 42 H 1.09001 * 109.47792 * 300.00277 * 17 16 13 43 43 H 1.09000 * 109.46980 * 60.00512 * 17 16 13 44 44 H 1.08998 * 109.47107 * 300.00163 * 18 17 16 45 45 H 1.09000 * 109.46995 * 60.00275 * 18 17 16 46 46 H 1.08998 * 109.47063 * 299.99931 * 19 18 17 47 47 H 1.09000 * 109.47184 * 60.00132 * 19 18 17 48 48 H 0.97000 * 119.99637 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 0.0059 5 6 1.9224 3.6056 -0.0002 6 6 3.3031 3.6807 -0.0065 7 6 4.0614 2.5253 -0.0060 8 6 3.4372 1.2865 0.0002 9 7 4.2040 0.1136 0.0012 10 6 5.3791 0.0772 0.6600 11 8 5.8094 1.0806 1.1884 12 6 6.1554 -1.2116 0.7457 13 6 7.4417 -0.9803 1.5410 14 1 7.1957 -0.5558 2.5144 15 6 8.1681 -2.3129 1.7349 16 7 8.3111 -0.0511 0.8070 17 6 9.2222 0.6507 1.7209 18 6 10.1090 1.6076 0.9217 19 6 11.0585 2.3381 1.8735 20 6 11.9323 3.2801 1.0862 21 1 11.8213 3.3512 0.0142 22 6 12.8736 4.0515 1.7344 23 7 13.0085 3.9654 3.0398 24 14 13.9564 5.2198 0.7586 25 1 13.6086 5.1301 -0.6823 26 1 13.7401 6.6096 1.2349 27 1 15.3816 4.8480 0.9474 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2148 2.3195 0.0110 32 1 1.3339 4.5112 0.0002 33 1 3.7902 4.6447 -0.0117 34 1 5.1397 2.5868 -0.0105 35 1 3.8889 -0.6722 -0.4723 36 1 5.5500 -1.9680 1.2451 37 1 6.4061 -1.5521 -0.2590 38 1 9.0843 -2.1481 2.3019 39 1 7.5231 -3.0025 2.2796 40 1 8.4141 -2.7375 0.7617 41 1 8.8241 -0.5313 0.0830 42 1 8.6416 1.2167 2.4493 43 1 9.8470 -0.0762 2.2401 44 1 10.6897 1.0419 0.1931 45 1 9.4840 2.3344 0.4029 46 1 10.4781 2.9037 2.6024 47 1 11.6835 1.6110 2.3921 48 1 13.6704 4.5083 3.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178649398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:19 Heat of formation + Delta-G solvation = -83.339249 kcal Electronic energy + Delta-G solvation = -26400.296490 eV Core-core repulsion = 22647.025520 eV Total energy + Delta-G solvation = -3753.270971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70980 -40.36372 -38.51471 -37.94497 -35.93549 -35.61140 -34.05082 -31.73009 -31.10641 -30.60696 -28.66581 -27.93143 -27.65698 -24.51614 -23.91847 -23.12809 -22.20521 -21.80562 -20.91422 -19.38037 -18.52655 -18.23606 -17.84473 -17.02025 -16.74016 -16.57926 -16.43714 -16.34361 -15.91096 -15.56242 -15.43232 -15.01621 -14.67500 -14.40706 -14.39673 -14.27216 -13.74804 -13.66324 -13.39083 -13.10934 -13.06793 -12.79552 -12.69012 -12.65083 -12.57777 -12.45980 -12.18181 -12.12520 -11.99179 -11.85034 -11.54844 -11.37562 -11.30164 -11.05166 -10.62721 -10.57554 -9.57411 -9.19641 -8.79727 -8.21317 -6.32804 0.29843 0.42725 1.37857 1.39338 1.53037 1.80591 2.13343 2.34401 2.39986 2.83367 3.11110 3.27417 3.79792 3.90280 3.92747 4.03191 4.22303 4.25885 4.35168 4.38296 4.43701 4.44780 4.49785 4.50563 4.63518 4.67962 4.72598 4.73911 4.78982 4.84845 4.88290 4.96685 5.13828 5.16708 5.18585 5.24518 5.30905 5.33368 5.50597 5.54521 5.63945 5.74146 5.84049 5.84390 6.13383 6.27451 6.42430 6.57457 6.65954 6.83844 7.36151 7.36485 8.91157 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002489 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.507829 B =11248.985133 C =12902.228095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.095 3.905 4 C -0.191 4.191 5 C -0.097 4.097 6 C -0.151 4.151 7 C -0.110 4.110 8 C 0.101 3.899 9 N -0.663 5.663 10 C 0.508 3.492 11 O -0.544 6.544 12 C -0.115 4.115 13 C 0.093 3.907 14 H 0.056 0.944 15 C -0.174 4.174 16 N -0.680 5.680 17 C 0.085 3.915 18 C -0.088 4.088 19 C 0.026 3.974 20 C -0.542 4.542 21 H 0.059 0.941 22 C -0.005 4.005 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.274 1.274 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.422 0.578 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.342 0.658 42 H 0.043 0.957 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.042 0.958 46 H -0.016 1.016 47 H -0.007 1.007 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.432 -13.950 -8.718 33.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.048 3.952 4 C -0.210 4.210 5 C -0.115 4.115 6 C -0.170 4.170 7 C -0.131 4.131 8 C 0.006 3.994 9 N -0.311 5.311 10 C 0.297 3.703 11 O -0.420 6.420 12 C -0.155 4.155 13 C -0.017 4.017 14 H 0.075 0.925 15 C -0.232 4.232 16 N -0.311 5.311 17 C -0.045 4.045 18 C -0.127 4.127 19 C -0.011 4.011 20 C -0.580 4.580 21 H 0.077 0.923 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.203 1.203 27 H -0.200 1.200 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.260 0.740 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.002 0.998 47 H 0.011 0.989 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.380 -12.930 -8.182 33.126 hybrid contribution 1.222 0.079 0.110 1.230 sum -28.157 -12.851 -8.073 31.987 Atomic orbital electron populations 1.23353 0.76189 1.05657 1.02277 1.85991 1.23548 1.25804 1.89022 1.18827 0.90028 0.86029 1.00363 1.21407 1.01225 0.91197 1.07179 1.21262 0.93931 0.98380 0.97934 1.21233 0.94800 0.98141 1.02832 1.21197 1.00710 0.91476 0.99668 1.17261 0.87773 0.87533 1.06843 1.43378 1.20786 1.13763 1.53138 1.21424 0.80197 0.91939 0.76768 1.90756 1.67686 1.37258 1.46263 1.21732 0.95278 0.93819 1.04650 1.21335 0.92431 0.91537 0.96401 0.92510 1.22420 1.00617 0.97017 1.03176 1.60425 1.24415 1.31869 1.14358 1.21650 0.92898 0.95362 0.94544 1.21333 0.96155 0.97246 0.97918 1.18959 0.93482 0.94214 0.94469 1.21711 1.18750 1.23197 0.94314 0.92314 1.26061 0.98999 0.99085 0.96036 1.70122 1.35985 1.41888 1.09519 0.85333 0.78193 0.78143 0.78978 1.18600 1.20306 1.19961 0.86181 0.91986 0.91422 0.82228 0.82917 0.85045 0.86362 0.73955 0.85360 0.86202 0.93881 0.89956 0.90583 0.83934 0.93888 0.95829 0.92756 0.93952 0.99803 0.98890 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.35 10.05 -93.22 -0.94 -6.29 16 3 C 0.09 1.94 6.70 22.60 0.15 2.09 16 4 C -0.19 -3.20 9.04 22.35 0.20 -3.00 16 5 C -0.10 -1.75 10.04 22.28 0.22 -1.53 16 6 C -0.15 -3.64 10.04 22.27 0.22 -3.41 16 7 C -0.11 -3.22 8.70 22.38 0.19 -3.02 16 8 C 0.10 2.56 6.32 38.19 0.24 2.81 16 9 N -0.66 -14.54 5.19 -303.14 -1.57 -16.11 16 10 C 0.51 13.28 7.53 87.66 0.66 13.94 16 11 O -0.54 -20.12 12.79 -3.07 -0.04 -20.16 16 12 C -0.11 -2.03 5.38 29.84 0.16 -1.87 16 13 C 0.09 2.26 2.15 44.91 0.10 2.36 16 14 H 0.06 1.70 7.61 -2.39 -0.02 1.68 16 15 C -0.17 -3.17 9.16 71.98 0.66 -2.51 16 16 N -0.68 -21.08 5.40 -491.58 -2.65 -23.73 16 17 C 0.08 3.34 5.48 86.31 0.47 3.81 16 18 C -0.09 -4.10 5.41 30.60 0.17 -3.94 16 19 C 0.03 1.52 4.97 29.85 0.15 1.67 16 20 C -0.54 -33.03 9.11 25.60 0.23 -32.80 16 21 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 22 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 23 N -0.93 -59.73 13.29 21.45 0.28 -59.44 16 24 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 28 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 0.40 7.65 -2.39 -0.02 0.38 16 30 H 0.07 0.35 7.68 -2.39 -0.02 0.34 16 31 H 0.16 1.58 6.30 -2.91 -0.02 1.56 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.12 4.21 6.20 -2.91 -0.02 4.19 16 35 H 0.42 6.38 8.56 -92.70 -0.79 5.59 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 0.96 7.45 -2.39 -0.02 0.94 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.34 9.29 8.47 -89.69 -0.76 8.53 16 42 H 0.04 1.90 8.06 -2.39 -0.02 1.88 16 43 H 0.02 0.90 7.44 -2.39 -0.02 0.89 16 44 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 46 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 48 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -81.22 393.73 1.92 -79.30 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.59 Total: 21.92 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 5.41 Total: -23.96 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.94 Total: -99.28 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.98 Total: -26.45 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -81.22 1.92 -79.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.041 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds