Wall clock time and date at job start Tue Mar 31 2020 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46929 * 184.99703 * 4 3 2 6 6 C 1.52997 * 109.47317 * 305.00599 * 4 3 2 7 7 N 1.46506 * 109.46684 * 65.00655 * 4 3 2 8 8 C 1.46505 * 119.99873 * 299.99551 * 7 4 3 9 9 C 1.34771 * 120.00092 * 119.99866 * 7 4 3 10 10 O 1.21587 * 119.99994 * 0.02562 * 9 7 4 11 11 N 1.34774 * 119.99918 * 179.97438 * 9 7 4 12 12 C 1.46505 * 119.99989 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47328 * 34.99395 * 12 11 9 14 14 C 1.52997 * 109.47429 * 154.99961 * 12 11 9 15 15 C 1.50703 * 109.46967 * 294.99700 * 14 12 11 16 16 H 1.07995 * 119.99851 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99934 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00321 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47104 * 89.99563 * 19 17 15 21 21 H 1.48501 * 109.46946 * 210.00327 * 19 17 15 22 22 H 1.48502 * 109.46640 * 329.99562 * 19 17 15 23 23 C 1.50706 * 109.46864 * 274.99804 * 12 11 9 24 24 C 1.38234 * 120.00063 * 319.72556 * 23 12 11 25 25 C 1.38230 * 120.00242 * 179.78539 * 24 23 12 26 26 C 1.38244 * 119.99464 * 0.44479 * 25 24 23 27 27 C 1.38226 * 120.00019 * 359.80794 * 26 25 24 28 28 C 1.38229 * 120.00496 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 31 31 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 32 32 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 33 33 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 37 37 H 1.08999 * 109.46723 * 90.00515 * 8 7 4 38 38 H 1.08997 * 109.46979 * 210.00219 * 8 7 4 39 39 H 1.09005 * 109.46961 * 330.00570 * 8 7 4 40 40 H 0.96998 * 120.00566 * 359.97438 * 11 9 7 41 41 H 1.08998 * 109.46975 * 54.99432 * 14 12 11 42 42 H 1.08993 * 109.47373 * 174.99757 * 14 12 11 43 43 H 0.97003 * 120.00488 * 180.02562 * 18 17 15 44 44 H 1.08007 * 119.99635 * 359.97438 * 24 23 12 45 45 H 1.07993 * 120.00562 * 180.27301 * 25 24 23 46 46 H 1.08002 * 119.99440 * 179.83103 * 26 25 24 47 47 H 1.08002 * 120.00073 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00543 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9783 2.1766 0.0902 6 6 3.9781 0.3198 1.1825 7 7 3.9766 0.5642 -1.2510 8 6 3.5152 -0.7807 -1.6042 9 6 4.8069 1.2305 -2.0775 10 8 5.1902 2.3464 -1.7841 11 7 5.2131 0.6593 -3.2286 12 6 6.1161 1.3834 -4.1268 13 1 6.8108 1.9826 -3.5381 14 6 6.9003 0.3823 -4.9774 15 6 7.7973 -0.4390 -4.0874 16 1 7.8067 -0.2646 -3.0217 17 6 8.6051 -1.4137 -4.6337 18 7 8.5925 -1.6271 -5.9313 19 14 9.7165 -2.4322 -3.5304 20 1 8.9867 -3.6424 -3.0745 21 1 10.9269 -2.8398 -4.2880 22 1 10.1192 -1.6236 -2.3518 23 6 5.3121 2.2860 -5.0268 24 6 4.1149 1.8440 -5.5580 25 6 3.3753 2.6735 -6.3800 26 6 3.8374 3.9418 -6.6782 27 6 5.0371 4.3818 -6.1512 28 6 5.7746 3.5540 -5.3256 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6498 0.7815 2.1137 35 1 5.0647 0.2335 1.1826 36 1 3.5351 -0.6721 1.0929 37 1 2.5914 -0.7088 -2.1782 38 1 4.2768 -1.2806 -2.2027 39 1 3.3342 -1.3533 -0.6945 40 1 4.9082 -0.2314 -3.4622 41 1 6.2045 -0.2755 -5.4983 42 1 7.5060 0.9207 -5.7062 43 1 9.1606 -2.3131 -6.3156 44 1 3.7559 0.8516 -5.3283 45 1 2.4378 2.3298 -6.7914 46 1 3.2608 4.5889 -7.3226 47 1 5.3984 5.3725 -6.3845 48 1 6.7122 3.8977 -4.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178797752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:11 Heat of formation + Delta-G solvation = -67.246953 kcal Electronic energy + Delta-G solvation = -28017.058645 eV Core-core repulsion = 24264.485488 eV Total energy + Delta-G solvation = -3752.573156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46797 -40.09773 -38.98102 -37.04761 -36.42092 -34.77375 -33.33421 -31.77974 -31.41327 -30.44542 -28.22728 -27.82961 -26.74068 -26.27717 -23.81397 -23.48778 -22.90303 -21.30958 -20.45923 -19.26125 -18.57168 -17.74538 -17.53014 -17.13570 -16.75461 -16.68254 -16.47300 -16.05895 -15.75724 -15.66286 -14.98494 -14.86259 -14.53028 -14.30307 -14.18259 -14.00807 -13.84097 -13.66697 -13.50299 -13.35536 -13.14782 -12.98922 -12.87527 -12.63292 -12.61385 -12.42881 -12.13935 -12.01358 -11.92019 -11.85574 -11.57100 -11.32680 -11.12526 -10.58457 -10.55585 -10.06703 -9.74780 -9.53300 -9.40452 -8.19640 -6.29563 0.52583 0.57201 1.38693 1.40561 1.51176 1.75848 2.23378 2.40287 2.89710 2.93500 3.11195 3.20144 3.86923 4.01715 4.04554 4.09034 4.21710 4.31506 4.32680 4.35373 4.44330 4.49260 4.53273 4.61037 4.64554 4.66649 4.76045 4.76465 4.80348 4.83349 4.90972 5.02335 5.06967 5.13986 5.20899 5.30217 5.33974 5.43725 5.61915 5.62910 5.63906 5.65975 5.78560 5.92931 6.07484 6.17366 6.22058 6.25935 6.82404 7.07898 7.39175 7.66729 8.91095 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.008199 B = 0.005109 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.409977 B = 5478.960722 C = 7922.872303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.063 3.937 4 C 0.151 3.849 5 H 0.092 0.908 6 C -0.148 4.148 7 N -0.622 5.622 8 C 0.091 3.909 9 C 0.700 3.300 10 O -0.638 6.638 11 N -0.712 5.712 12 C 0.217 3.783 13 H 0.055 0.945 14 C 0.039 3.961 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.132 4.132 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.402 0.598 41 H 0.011 0.989 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.116 0.884 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.144 0.856 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 4.647 8.283 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.015 4.015 4 C 0.047 3.953 5 H 0.110 0.890 6 C -0.206 4.206 7 N -0.359 5.359 8 C -0.051 4.051 9 C 0.402 3.598 10 O -0.521 6.521 11 N -0.365 5.365 12 C 0.111 3.889 13 H 0.073 0.927 14 C 0.002 3.998 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.151 4.151 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.239 0.761 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.163 0.837 46 H 0.169 0.831 47 H 0.162 0.838 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.580 5.136 8.359 20.132 hybrid contribution 0.788 -0.826 0.137 1.149 sum -16.792 4.311 8.496 19.306 Atomic orbital electron populations 1.22866 0.79971 1.03639 1.00393 1.87883 1.20843 1.27256 1.95474 1.22802 0.92275 0.85382 1.01026 1.21120 0.92868 0.98270 0.83041 0.89023 1.21985 1.00564 1.01074 0.97009 1.47055 1.49391 1.18137 1.21318 1.21721 0.98962 0.82061 1.02357 1.16096 0.79329 0.83797 0.80592 1.90804 1.63312 1.21039 1.76898 1.45088 1.50873 1.20288 1.20292 1.19590 0.88594 0.91969 0.88703 0.92723 1.19125 0.93964 0.92677 0.94078 1.21354 1.23378 1.18135 0.93687 0.93198 1.25746 0.98309 0.98353 0.96171 1.70065 1.40628 1.33812 1.11988 0.85594 0.78511 0.79075 0.78726 1.19413 1.20781 1.19929 1.20489 0.96168 0.95144 0.97991 1.21014 0.94665 1.00027 0.98130 1.21416 1.00405 0.94496 0.97952 1.21456 0.96417 0.96440 1.00378 1.21379 0.95427 1.00197 0.97077 1.21169 1.00392 0.93907 0.99642 0.88487 0.93038 0.94294 0.90141 0.94136 0.89592 0.94030 0.90898 0.92007 0.92518 0.88981 0.76103 0.97077 0.97615 0.92697 0.86637 0.83698 0.83051 0.83789 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.48 7.55 -148.98 -1.13 -8.60 16 3 C 0.06 1.27 5.69 71.98 0.41 1.68 16 4 C 0.15 3.89 3.17 44.99 0.14 4.03 16 5 H 0.09 2.76 6.90 -2.39 -0.02 2.74 16 6 C -0.15 -3.22 8.97 71.98 0.65 -2.58 16 7 N -0.62 -19.10 2.76 -840.61 -2.32 -21.42 16 8 C 0.09 2.30 8.49 127.77 1.08 3.39 16 9 C 0.70 27.74 8.24 179.06 1.48 29.22 16 10 O -0.64 -29.73 15.33 -3.99 -0.06 -29.79 16 11 N -0.71 -28.48 3.91 -461.40 -1.80 -30.29 16 12 C 0.22 9.77 2.11 44.25 0.09 9.86 16 13 H 0.05 2.75 7.44 -2.39 -0.02 2.74 16 14 C 0.04 2.02 4.49 29.85 0.13 2.15 16 15 C -0.53 -29.35 8.84 25.60 0.23 -29.13 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.72 5.46 84.65 0.46 1.19 16 18 N -0.92 -54.48 13.29 21.45 0.28 -54.19 16 19 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.10 -3.87 4.91 -19.86 -0.10 -3.97 16 24 C -0.12 -4.21 9.32 22.27 0.21 -4.00 16 25 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 26 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 27 C -0.12 -3.65 10.05 22.26 0.22 -3.42 16 28 C -0.13 -4.92 9.67 22.27 0.22 -4.70 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.51 6.08 -2.38 -0.01 1.49 16 37 H 0.06 1.43 7.97 -2.39 -0.02 1.41 16 38 H 0.06 1.53 6.36 -2.39 -0.02 1.52 16 39 H 0.09 2.04 5.87 -2.38 -0.01 2.02 16 40 H 0.40 14.97 6.33 -92.71 -0.59 14.39 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 44 H 0.12 3.89 7.73 -2.91 -0.02 3.87 16 45 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 46 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 47 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 48 H 0.11 4.16 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -71.00 390.42 4.27 -66.73 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.35 Total: 32.66 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.92 Total: -1.22 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.84 Total: -105.90 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.19 Total: -38.39 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -71.00 4.27 -66.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178797752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.520 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds