Wall clock time and date at job start Tue Mar 31 2020 12:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21577 * 120.00380 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99632 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99876 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47033 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46947 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00260 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99511 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99775 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47160 * 59.99986 * 15 13 11 17 17 H 1.48500 * 109.47273 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47274 * 299.99854 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 20 20 H 1.08994 * 109.47465 * 185.00197 * 19 2 1 21 21 O 1.42904 * 109.47221 * 305.00599 * 19 2 1 22 22 C 1.53003 * 109.47015 * 64.99921 * 19 2 1 23 23 C 1.50696 * 109.47457 * 174.99954 * 22 19 2 24 24 C 1.38232 * 120.00282 * 269.73320 * 23 22 19 25 25 C 1.38234 * 119.99952 * 179.76747 * 24 23 22 26 26 C 1.38237 * 120.00326 * 0.49862 * 25 24 23 27 27 C 1.38240 * 119.99327 * 359.75305 * 26 25 24 28 28 C 1.38234 * 120.00489 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96995 * 119.99663 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46889 * 299.99849 * 8 7 5 35 35 H 1.08999 * 109.47178 * 59.99886 * 8 7 5 36 36 H 1.09001 * 109.47314 * 300.00216 * 9 8 7 37 37 H 1.09005 * 109.47115 * 60.00419 * 9 8 7 38 38 H 1.09000 * 109.46880 * 299.99942 * 10 9 8 39 39 H 1.08999 * 109.47085 * 59.99917 * 10 9 8 40 40 H 0.97005 * 119.99958 * 179.97438 * 14 13 11 41 41 H 0.96695 * 113.99906 * 59.99617 * 21 19 2 42 42 H 1.09005 * 109.47422 * 295.00404 * 22 19 2 43 43 H 1.09005 * 109.46949 * 55.00013 * 22 19 2 44 44 H 1.07997 * 119.99881 * 359.97438 * 24 23 22 45 45 H 1.08003 * 119.99812 * 180.23072 * 25 24 23 46 46 H 1.07995 * 120.00543 * 179.72825 * 26 25 24 47 47 H 1.08004 * 119.99343 * 179.97438 * 27 26 25 48 48 H 1.07996 * 120.00067 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1615 2.4116 7 7 2.5959 -0.6537 3.4578 8 6 2.7363 0.0773 4.7196 9 6 3.2594 -0.8693 5.8018 10 6 3.4067 -0.1057 7.1195 11 6 3.9213 -1.0383 8.1856 12 1 4.1236 -2.0720 7.9471 13 6 4.1339 -0.5716 9.4655 14 7 3.8881 0.6873 9.7557 15 14 4.7726 -1.7273 10.7868 16 1 6.0945 -2.2656 10.3769 17 1 4.9154 -0.9863 12.0657 18 1 3.8161 -2.8487 10.9681 19 6 2.0400 -0.7213 -1.2492 20 1 3.1263 -0.7996 -1.2055 21 8 1.4701 -2.0304 -1.3094 22 6 1.6352 0.0688 -2.4953 23 6 2.2410 -0.5738 -3.7164 24 6 3.4887 -0.1769 -4.1594 25 6 4.0464 -0.7698 -5.2767 26 6 3.3518 -1.7524 -5.9571 27 6 2.1018 -2.1457 -5.5171 28 6 1.5465 -1.5568 -4.3965 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 2.8259 -1.5950 3.4143 34 1 3.4380 0.9006 4.5863 35 1 1.7660 0.4720 5.0207 36 1 2.5573 -1.6924 5.9349 37 1 4.2297 -1.2644 5.5009 38 1 4.1090 0.7171 6.9860 39 1 2.4366 0.2897 7.4206 40 1 4.0374 1.0155 10.6563 41 1 0.5041 -2.0373 -1.3504 42 1 0.5491 0.0714 -2.5870 43 1 1.9949 1.0941 -2.4081 44 1 4.0294 0.5942 -3.6306 45 1 5.0229 -0.4622 -5.6206 46 1 3.7856 -2.2126 -6.8326 47 1 1.5589 -2.9132 -6.0489 48 1 0.5697 -1.8638 -4.0530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178867806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:39 Heat of formation + Delta-G solvation = -105.873178 kcal Electronic energy + Delta-G solvation = -25695.087257 eV Core-core repulsion = 21940.839142 eV Total energy + Delta-G solvation = -3754.248115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28085 -40.31365 -38.90811 -36.99471 -35.46109 -35.17667 -33.82953 -33.08092 -31.69987 -31.36965 -28.86579 -28.39114 -25.88886 -24.78461 -23.39047 -22.50711 -22.28951 -21.62955 -21.50868 -19.38342 -18.57442 -18.13242 -17.35713 -16.92653 -16.83702 -16.67128 -16.46525 -15.95206 -15.81250 -15.65811 -15.40403 -15.30408 -14.85502 -14.25292 -14.21541 -13.93015 -13.75292 -13.71805 -13.53364 -13.39074 -13.15412 -12.71985 -12.55115 -12.54435 -12.46712 -12.39116 -12.02970 -11.81034 -11.76998 -11.65968 -11.62902 -11.31305 -11.19415 -11.03233 -10.53966 -10.36003 -9.78132 -9.74718 -9.49977 -8.18510 -6.30137 0.49866 0.57494 1.42073 1.45236 1.53036 1.71091 2.16072 2.42672 2.92060 3.14983 3.28809 3.48125 3.60599 3.92186 4.05252 4.06673 4.17458 4.22861 4.23820 4.26468 4.33081 4.35306 4.41667 4.56841 4.67350 4.70160 4.80782 4.89825 4.93616 4.96551 5.01256 5.03667 5.17413 5.20581 5.24356 5.36360 5.47794 5.54867 5.57988 5.63981 5.69368 5.71801 5.77132 5.84859 6.02811 6.19583 6.23495 6.80736 6.86739 7.12844 7.39244 7.60346 8.93276 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.001689 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.920668 B =16576.707780 C =16925.774193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 H 0.076 0.924 4 N -0.725 5.725 5 C 0.697 3.303 6 O -0.639 6.639 7 N -0.732 5.732 8 C 0.151 3.849 9 C -0.100 4.100 10 C 0.023 3.977 11 C -0.543 4.543 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.124 3.876 20 H 0.095 0.905 21 O -0.560 6.560 22 C -0.107 4.107 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.113 4.113 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.386 0.614 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -7.180 -34.289 35.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 H 0.094 0.906 4 N -0.381 5.381 5 C 0.397 3.603 6 O -0.521 6.521 7 N -0.388 5.388 8 C 0.026 3.974 9 C -0.138 4.138 10 C -0.014 4.014 11 C -0.581 4.581 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.190 1.190 19 C 0.064 3.936 20 H 0.113 0.887 21 O -0.368 6.368 22 C -0.145 4.145 23 C -0.084 4.084 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.131 4.131 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.247 0.753 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.236 0.764 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.386 -6.165 -34.079 35.049 hybrid contribution 0.078 -0.520 1.063 1.186 sum -5.309 -6.685 -33.016 34.102 Atomic orbital electron populations 1.22231 0.94305 1.03214 1.02820 1.21577 0.95274 0.97049 0.83810 0.90593 1.44984 1.71118 1.14265 1.07755 1.16197 0.78166 0.84699 0.81257 1.90880 1.59196 1.16559 1.85437 1.45058 1.70583 1.14458 1.08669 1.21053 0.99790 0.94615 0.81954 1.21588 1.00863 0.97856 0.93533 1.18945 0.95149 0.95117 0.92237 1.21656 1.43901 0.97136 0.95379 0.91549 1.26027 0.95820 0.96788 1.01458 1.70110 1.49946 1.16270 1.21092 0.85461 0.79207 0.78601 0.77517 1.19089 1.21132 1.19035 1.21942 0.98348 0.82766 0.90508 0.88720 1.86606 1.26717 1.26991 1.96505 1.21311 1.02565 0.99630 0.91027 1.19843 0.94844 0.97136 0.96582 1.21312 0.95759 1.00820 0.97438 1.21393 1.00575 0.97122 0.96031 1.21435 0.95514 0.97900 1.00663 1.21449 0.96046 1.00308 0.97162 1.21256 1.00668 0.95928 0.95283 0.89051 0.94473 0.90421 0.75259 0.75320 0.93588 0.93574 0.91403 0.91449 0.98924 0.98905 0.92831 0.76373 0.88211 0.89289 0.85576 0.85058 0.84849 0.84660 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 8.81 71.98 0.63 -1.70 16 2 C 0.13 2.12 2.45 44.99 0.11 2.23 16 3 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 4 N -0.72 -14.69 5.06 -457.82 -2.32 -17.01 16 5 C 0.70 20.95 8.53 179.05 1.53 22.48 16 6 O -0.64 -25.15 16.00 -3.96 -0.06 -25.21 16 7 N -0.73 -20.98 5.56 -478.54 -2.66 -23.64 16 8 C 0.15 5.50 5.67 86.38 0.49 5.99 16 9 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 10 C 0.02 1.22 4.97 29.85 0.15 1.37 16 11 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 12 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 14 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 15 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 C 0.12 1.49 2.85 30.60 0.09 1.57 16 20 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 21 O -0.56 -6.31 12.46 -148.98 -1.86 -8.17 16 22 C -0.11 -1.03 4.66 29.85 0.14 -0.89 16 23 C -0.08 -1.07 4.97 -19.87 -0.10 -1.17 16 24 C -0.14 -1.89 9.70 22.27 0.22 -1.67 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 26 C -0.14 -1.73 10.05 22.27 0.22 -1.51 16 27 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 28 C -0.11 -1.36 9.40 22.27 0.21 -1.15 16 29 H 0.09 0.82 6.68 -2.39 -0.02 0.80 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.78 6.72 -2.38 -0.02 0.76 16 32 H 0.41 6.47 8.40 -92.71 -0.78 5.69 16 33 H 0.41 8.99 8.49 -92.71 -0.79 8.21 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 41 H 0.39 2.07 7.19 -74.06 -0.53 1.53 16 42 H 0.10 0.60 6.76 -2.38 -0.02 0.59 16 43 H 0.09 0.84 8.08 -2.38 -0.02 0.82 16 44 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 46 H 0.13 1.17 8.06 -2.91 -0.02 1.14 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 48 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -75.54 396.60 -0.73 -76.26 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -1.13 Total: 19.99 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.99 Total: -11.17 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.69 Total: -97.71 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.92 Total: -33.38 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.54 -0.73 -76.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178867806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.612 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds