Wall clock time and date at job start Tue Mar 31 2020 12:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47215 * 2 1 4 4 C 1.46903 * 110.99841 * 300.84958 * 3 2 1 5 5 C 1.53002 * 109.47043 * 288.93193 * 4 3 2 6 6 C 1.46900 * 111.00298 * 64.80292 * 3 2 1 7 7 C 1.52999 * 109.46795 * 66.04682 * 6 3 2 8 8 C 1.53001 * 109.47161 * 180.02562 * 7 6 3 9 9 N 1.46498 * 109.47652 * 180.02562 * 8 7 6 10 10 C 1.34768 * 120.00413 * 180.02562 * 9 8 7 11 11 O 1.21594 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.47538 * 120.00394 * 179.97438 * 10 9 8 13 13 C 1.39671 * 120.19256 * 359.97438 * 12 10 9 14 14 C 1.37828 * 119.91628 * 180.02562 * 13 12 10 15 15 C 1.38569 * 120.32355 * 0.02562 * 14 13 12 16 16 C 1.38026 * 120.40258 * 0.02562 * 15 14 13 17 17 C 1.38830 * 120.07263 * 359.95946 * 16 15 14 18 18 O 1.35525 * 120.16163 * 180.02562 * 17 16 15 19 19 C 1.34820 * 116.99711 * 354.34910 * 18 17 16 20 20 H 1.08000 * 119.99829 * 5.07660 * 19 18 17 21 21 C 1.38698 * 119.99430 * 185.07197 * 19 18 17 22 22 N 1.31516 * 120.00510 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99501 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47163 * 59.99892 * 23 21 19 25 25 H 1.48508 * 109.46859 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47137 * 299.99661 * 23 21 19 27 27 H 1.08992 * 109.47328 * 65.16274 * 1 2 3 28 28 H 1.09002 * 109.47484 * 185.16479 * 1 2 3 29 29 H 1.09008 * 109.47066 * 305.15874 * 1 2 3 30 30 H 1.08999 * 109.47047 * 239.99878 * 2 1 3 31 31 H 1.09005 * 109.47012 * 119.99797 * 2 1 3 32 32 H 1.09005 * 109.47146 * 48.93164 * 4 3 2 33 33 H 1.09000 * 109.47047 * 168.93270 * 4 3 2 34 34 H 1.08996 * 109.47008 * 305.09040 * 5 4 3 35 35 H 1.09003 * 109.47208 * 65.09307 * 5 4 3 36 36 H 1.08999 * 109.47112 * 185.09198 * 5 4 3 37 37 H 1.09005 * 109.46880 * 306.04795 * 6 3 2 38 38 H 1.08991 * 109.47313 * 186.04693 * 6 3 2 39 39 H 1.08997 * 109.47456 * 60.00100 * 7 6 3 40 40 H 1.09003 * 109.47530 * 299.99797 * 7 6 3 41 41 H 1.09001 * 109.47630 * 59.99363 * 8 7 6 42 42 H 1.09007 * 109.46833 * 300.00240 * 8 7 6 43 43 H 0.97006 * 119.99535 * 359.97438 * 9 8 7 44 44 H 1.07996 * 120.03862 * 0.27485 * 13 12 10 45 45 H 1.08001 * 119.83549 * 180.02562 * 14 13 12 46 46 H 1.08001 * 119.79724 * 179.97438 * 15 14 13 47 47 H 1.08007 * 119.96285 * 179.97438 * 16 15 14 48 48 H 0.96996 * 120.00217 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5321 2.1157 -1.1774 5 6 2.2405 1.5956 -2.4299 6 6 1.6447 2.0760 1.2409 7 6 2.3727 1.4325 2.4228 8 6 1.9817 2.1518 3.7154 9 7 2.6792 1.5362 4.8471 10 6 2.4868 2.0080 6.0947 11 8 1.7347 2.9451 6.2811 12 6 3.1888 1.3877 7.2345 13 6 4.0532 0.3108 7.0252 14 6 4.7057 -0.2648 8.0942 15 6 4.5081 0.2193 9.3775 16 6 3.6560 1.2822 9.5996 17 6 2.9906 1.8746 8.5349 18 8 2.1540 2.9187 8.7509 19 6 1.9198 3.2601 10.0340 20 1 2.4535 2.7635 10.8308 21 6 0.9937 4.2491 10.3304 22 7 0.3436 4.8534 9.3600 23 14 0.6698 4.7226 12.1082 24 1 1.9279 5.2119 12.7272 25 1 -0.3549 5.7964 12.1555 26 1 0.1794 3.5364 12.8549 27 1 -0.3633 0.4316 -0.9325 28 1 -0.3634 -1.0235 0.0925 29 1 -0.3633 0.5918 0.8402 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4573 1.9653 -1.2791 33 1 1.7404 3.1788 -1.0572 34 1 3.3196 1.6627 -2.2912 35 1 1.9601 0.5562 -2.6008 36 1 1.9466 2.1974 -3.2899 37 1 0.5679 1.9960 1.3902 38 1 1.9247 3.1270 1.1703 39 1 3.4494 1.5125 2.2736 40 1 2.0927 0.3815 2.4935 41 1 0.9050 2.0716 3.8645 42 1 2.2614 3.2030 3.6450 43 1 3.2789 0.7884 4.6985 44 1 4.2133 -0.0678 6.0265 45 1 5.3741 -1.0972 7.9308 46 1 5.0234 -0.2384 10.2090 47 1 3.5070 1.6535 10.6028 48 1 -0.3038 5.5453 9.5673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194049384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:47 Heat of formation + Delta-G solvation = -34.459440 kcal Electronic energy + Delta-G solvation = -26467.865467 eV Core-core repulsion = 22716.714084 eV Total energy + Delta-G solvation = -3751.151383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.58067 -38.89701 -37.98642 -36.31315 -34.90757 -32.38094 -32.26635 -31.43193 -30.41723 -28.91504 -28.64417 -25.48261 -25.02379 -24.31280 -22.76444 -21.68345 -21.14909 -20.12409 -19.56542 -18.02360 -17.49578 -16.53255 -16.40811 -16.06691 -15.36453 -15.17327 -14.63680 -14.41469 -14.28094 -14.11386 -13.95321 -13.77879 -13.65559 -13.38190 -13.10252 -12.66901 -12.59318 -12.48663 -12.40217 -12.13493 -11.72214 -11.69902 -11.58743 -11.44207 -11.36957 -11.25474 -11.10308 -10.99259 -10.86905 -10.76988 -10.53882 -10.46470 -9.55426 -8.86161 -8.81711 -8.53707 -8.48852 -8.24215 -7.28891 -6.42549 -4.02628 1.74317 2.34009 3.12638 3.14788 3.17153 3.50773 3.79019 3.89282 3.95059 4.63902 4.65979 4.68483 4.91394 4.96541 5.04961 5.04993 5.09230 5.11651 5.18481 5.20378 5.25854 5.38252 5.42568 5.49406 5.57277 5.61456 5.68071 5.70429 5.74385 5.75450 5.79105 5.88564 6.01962 6.07142 6.14041 6.16052 6.27269 6.58480 6.71414 6.83216 6.84931 6.93255 7.01781 7.08121 7.25971 7.30962 7.71550 7.94099 8.17380 8.96923 9.14526 9.69740 10.71273 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.002519 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.617988 B =11112.395114 C =12459.551773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.043 3.957 5 C -0.146 4.146 6 C 0.053 3.947 7 C -0.125 4.125 8 C 0.126 3.874 9 N -0.744 5.744 10 C 0.553 3.447 11 O -0.502 6.502 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.124 6.124 19 C -0.404 4.404 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.833 5.833 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.392 0.608 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.131 0.869 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -9.512 -16.751 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.260 5.260 4 C -0.085 4.085 5 C -0.204 4.204 6 C -0.075 4.075 7 C -0.163 4.163 8 C 0.001 3.999 9 N -0.400 5.400 10 C 0.342 3.658 11 O -0.376 6.376 12 C -0.231 4.231 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.070 4.070 16 C -0.258 4.258 17 C 0.129 3.871 18 O -0.022 6.022 19 C -0.480 4.480 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.465 5.465 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.226 0.774 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.565 -8.405 -16.822 19.140 hybrid contribution -0.702 -0.236 0.900 1.165 sum 2.862 -8.641 -15.922 18.341 Atomic orbital electron populations 1.22435 0.98348 1.02527 1.02123 1.22225 0.92878 0.90407 1.02874 1.62264 1.59372 1.02323 1.02001 1.22149 0.97549 0.98251 0.90522 1.21757 1.01544 1.00820 0.96280 1.22069 0.98171 0.98458 0.88830 1.21766 1.01696 0.99979 0.92892 1.21102 0.97101 0.97280 0.84397 1.45859 1.49780 1.37742 1.06589 1.18236 0.81984 0.83429 0.82109 1.90947 1.35666 1.26853 1.84155 1.18868 1.09015 1.03736 0.91530 1.20764 0.93757 0.93314 0.97886 1.20461 1.06992 1.04625 0.92947 1.20893 0.95261 0.94478 0.96353 1.21156 1.03599 1.01356 0.99640 1.19286 0.89289 0.86640 0.91882 1.84180 1.51829 1.37483 1.28692 1.21451 1.24110 1.21438 0.80999 0.88933 1.25382 0.95185 0.95754 1.00000 1.70118 1.22448 1.21955 1.31952 0.85801 0.78693 0.78684 0.80349 1.19371 1.20174 1.19375 0.92492 0.92045 0.92067 0.90727 0.90320 0.94195 0.90949 0.91809 0.92947 0.92509 0.93959 0.90421 0.90534 0.91418 0.92083 0.91854 0.77399 0.87039 0.87288 0.87204 0.85096 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 9.22 37.16 0.34 -1.18 16 2 C 0.04 0.35 5.71 -3.83 -0.02 0.33 16 3 N -0.54 -4.79 4.67 -234.62 -1.10 -5.89 16 4 C 0.04 0.34 5.50 -3.82 -0.02 0.32 16 5 C -0.15 -1.00 9.83 37.16 0.37 -0.63 16 6 C 0.05 0.51 4.79 -3.82 -0.02 0.49 16 7 C -0.13 -1.29 5.26 -26.73 -0.14 -1.43 16 8 C 0.13 1.80 5.67 -4.04 -0.02 1.78 16 9 N -0.74 -12.13 5.51 -61.35 -0.34 -12.46 16 10 C 0.55 12.36 7.76 -12.47 -0.10 12.26 16 11 O -0.50 -13.98 15.17 -16.57 -0.25 -14.23 16 12 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 13 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 14 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 16 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 17 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 18 O -0.12 -3.69 7.84 -21.09 -0.17 -3.86 16 19 C -0.40 -11.54 9.49 30.90 0.29 -11.25 16 20 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 21 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 22 N -0.83 -25.35 13.67 55.48 0.76 -24.59 16 23 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.06 0.43 6.44 -51.93 -0.33 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.54 6.17 -51.92 -0.32 0.22 16 30 H 0.07 0.55 6.81 -51.93 -0.35 0.20 16 31 H 0.08 0.64 6.27 -51.93 -0.33 0.31 16 32 H 0.04 0.31 5.86 -51.93 -0.30 0.01 16 33 H 0.07 0.57 7.83 -51.93 -0.41 0.17 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.34 6.97 -51.93 -0.36 -0.02 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.42 6.07 -51.93 -0.32 0.11 16 38 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.65 6.46 -51.93 -0.34 0.32 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.39 5.09 6.50 -40.82 -0.27 4.83 16 44 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -34.61 381.53 -9.34 -43.95 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.15 Total: 7.06 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.82 Total: -11.36 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.68 Total: -42.95 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.42 Total: -18.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.61 -9.34 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194049384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.489 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds