Wall clock time and date at job start Tue Mar 31 2020 12:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47570 * 2 1 4 4 C 1.46900 * 110.99593 * 301.08258 * 3 2 1 5 5 C 1.52993 * 109.47417 * 288.79309 * 4 3 2 6 6 C 1.52994 * 109.47295 * 185.06521 * 5 4 3 7 7 C 1.50709 * 109.47313 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99444 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99829 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47036 * 90.00042 * 11 9 7 13 13 H 1.48505 * 109.47055 * 209.99813 * 11 9 7 14 14 H 1.48500 * 109.47133 * 329.99681 * 11 9 7 15 15 C 1.46903 * 110.99772 * 65.03661 * 3 2 1 16 16 C 1.50694 * 109.47295 * 66.04612 * 15 3 2 17 17 O 1.21291 * 119.99785 * 0.02562 * 16 15 3 18 18 N 1.34771 * 120.00300 * 179.97438 * 16 15 3 19 19 C 1.39919 * 120.00594 * 185.13682 * 18 16 15 20 20 C 1.38931 * 120.04558 * 213.13948 * 19 18 16 21 21 C 1.38121 * 120.04241 * 180.02562 * 20 19 18 22 22 C 1.38215 * 120.12311 * 359.95690 * 21 20 19 23 23 C 1.38761 * 120.08518 * 0.04351 * 22 21 20 24 24 O 1.35901 * 120.01831 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00457 * 359.97438 * 24 23 22 26 26 C 1.38626 * 119.96035 * 359.97438 * 23 22 21 27 27 H 1.08992 * 109.47172 * 185.79064 * 1 2 3 28 28 H 1.08998 * 109.46712 * 305.79716 * 1 2 3 29 29 H 1.09006 * 109.46795 * 65.78775 * 1 2 3 30 30 H 1.09002 * 109.47347 * 239.99907 * 2 1 3 31 31 H 1.08997 * 109.47020 * 120.00025 * 2 1 3 32 32 H 1.08998 * 109.47506 * 48.79716 * 4 3 2 33 33 H 1.09005 * 109.46782 * 168.78860 * 4 3 2 34 34 H 1.08999 * 109.46870 * 305.06359 * 5 4 3 35 35 H 1.08998 * 109.47107 * 65.06101 * 5 4 3 36 36 H 1.09005 * 109.47365 * 299.99961 * 6 5 4 37 37 H 1.09005 * 109.47418 * 60.00109 * 6 5 4 38 38 H 0.97005 * 119.99812 * 180.02562 * 10 9 7 39 39 H 1.09004 * 109.46700 * 306.04329 * 15 3 2 40 40 H 1.09004 * 109.46855 * 186.05025 * 15 3 2 41 41 H 0.97003 * 119.99502 * 5.13729 * 18 16 15 42 42 H 1.07998 * 119.97990 * 0.02562 * 20 19 18 43 43 H 1.07997 * 119.94007 * 179.97438 * 21 20 19 44 44 H 1.08000 * 119.95684 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47046 * 300.00346 * 25 24 23 46 46 H 1.08999 * 109.47107 * 59.99405 * 25 24 23 47 47 H 1.08994 * 109.47245 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.06167 * 180.27444 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5277 2.1173 -1.1746 5 6 2.2337 1.6013 -2.4299 6 6 1.8158 2.4473 -3.6342 7 6 2.5118 1.9394 -4.8708 8 1 3.1845 1.0972 -4.8042 9 6 2.2897 2.5500 -6.0868 10 7 1.4700 3.5754 -6.1678 11 14 3.1518 1.9200 -7.6196 12 1 2.3119 0.8814 -8.2683 13 1 3.3657 3.0452 -8.5649 14 1 4.4631 1.3329 -7.2440 15 6 1.6496 2.0743 1.2434 16 6 2.3709 1.4389 2.4039 17 8 3.1201 0.5041 2.2139 18 7 2.1844 1.9099 3.6528 19 6 2.9337 1.3923 4.7150 20 6 2.3722 1.3000 5.9824 21 6 3.1121 0.7895 7.0310 22 6 4.4120 0.3685 6.8225 23 6 4.9780 0.4584 5.5588 24 8 6.2564 0.0445 5.3555 25 6 6.9591 -0.4717 6.4875 26 6 4.2387 0.9705 4.5039 27 1 -0.3633 -1.0223 0.1037 28 1 -0.3633 0.6011 0.8335 29 1 -0.3633 0.4215 -0.9373 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4530 1.9651 -1.2737 33 1 1.7343 3.1806 -1.0525 34 1 3.3130 1.6706 -2.2942 35 1 1.9552 0.5617 -2.6020 36 1 0.7365 2.3781 -3.7700 37 1 2.0944 3.4870 -3.4622 38 1 1.3135 4.0048 -7.0235 39 1 0.5733 1.9941 1.3965 40 1 1.9293 3.1255 1.1731 41 1 1.5306 2.6078 3.8152 42 1 1.3565 1.6276 6.1478 43 1 2.6741 0.7189 8.0157 44 1 4.9880 -0.0306 7.6443 45 1 7.0190 0.2960 7.2591 46 1 6.4290 -1.3398 6.8793 47 1 7.9650 -0.7654 6.1878 48 1 4.6761 1.0371 3.5187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198680892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:17 Heat of formation + Delta-G solvation = -41.696279 kcal Electronic energy + Delta-G solvation = -26309.551682 eV Core-core repulsion = 22558.086486 eV Total energy + Delta-G solvation = -3751.465196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93010 -39.84770 -38.13893 -37.11465 -34.69415 -33.69695 -31.53675 -31.06558 -30.55309 -29.49478 -27.74359 -27.34475 -25.50533 -23.61488 -23.27875 -22.35599 -21.18058 -20.25826 -19.38080 -18.72075 -17.27169 -16.55962 -16.39834 -16.27358 -16.06987 -15.98121 -15.91059 -15.40240 -14.73406 -14.36637 -14.26704 -13.86403 -13.73797 -13.65397 -13.07160 -12.91294 -12.72807 -12.63129 -12.25134 -12.13407 -12.05313 -11.71673 -11.59522 -11.50538 -11.35687 -11.21119 -10.84684 -10.61889 -10.50458 -10.45950 -10.43170 -9.79743 -9.53478 -9.27332 -9.01462 -8.63728 -8.32177 -8.29757 -8.01196 -5.95535 -3.96875 0.98557 1.18305 2.47428 2.64103 3.09755 3.35808 3.41720 3.46392 3.54406 4.16518 4.49753 4.51420 4.58611 4.75298 4.79525 4.83219 4.87606 5.05584 5.09334 5.11977 5.16322 5.27416 5.31514 5.40503 5.45404 5.55030 5.61209 5.72620 5.83080 5.93391 5.98381 6.06767 6.12402 6.17718 6.20078 6.37532 6.45049 6.60548 6.74275 6.81961 7.07646 7.15866 7.19651 7.34797 7.40296 7.73771 7.88747 8.00454 8.05436 8.49497 9.10323 9.66900 11.15910 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.002115 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.033717 B =13233.532824 C =14045.809395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 N -0.518 5.518 4 C 0.052 3.948 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.032 3.968 16 C 0.513 3.487 17 O -0.491 6.491 18 N -0.680 5.680 19 C 0.193 3.807 20 C -0.187 4.187 21 C -0.062 4.062 22 C -0.229 4.229 23 C 0.147 3.853 24 O -0.314 6.314 25 C 0.028 3.972 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.412 0.588 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.100 0.900 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -4.105 30.755 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.242 5.242 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.015 4.015 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.099 4.099 16 C 0.301 3.699 17 O -0.362 6.362 18 N -0.327 5.327 19 C 0.098 3.902 20 C -0.207 4.207 21 C -0.080 4.080 22 C -0.249 4.249 23 C 0.101 3.899 24 O -0.227 6.227 25 C -0.067 4.067 26 C -0.177 4.177 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.248 0.752 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.149 -4.658 30.174 30.607 hybrid contribution -0.885 0.081 -0.455 0.999 sum 1.263 -4.577 29.719 30.096 Atomic orbital electron populations 1.22454 0.98930 1.01963 1.01923 1.22331 0.92034 0.90068 1.04111 1.62049 1.59607 1.02375 1.00121 1.22418 0.97652 0.97526 0.89878 1.21605 0.99777 0.99674 0.92982 1.19075 0.96455 0.94882 0.91106 1.21263 1.26254 1.15157 0.92756 0.92657 1.25027 0.95415 0.95064 0.99079 1.69969 1.36466 1.22119 1.25170 0.86601 0.80096 0.78361 0.83000 1.20740 1.21283 1.19838 1.22019 0.98331 0.99744 0.89833 1.21015 0.82413 0.83326 0.83166 1.90721 1.35418 1.26308 1.83765 1.43658 1.41376 1.41113 1.06534 1.17362 0.89647 0.95852 0.87348 1.20784 1.00604 1.07248 0.92111 1.20667 0.93155 0.95770 0.98447 1.21190 0.97843 1.09559 0.96291 1.18785 0.84031 0.93968 0.93111 1.86118 1.23215 1.76817 1.36526 1.23064 0.96926 0.98259 0.88463 1.20371 0.92482 1.05136 0.99735 0.92281 0.93347 0.91662 0.89925 0.89694 0.94381 0.91306 0.92447 0.93477 0.96875 0.96643 0.93112 0.91509 0.87509 0.75213 0.85590 0.85467 0.85523 0.92659 0.92642 0.88173 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.21 37.16 0.34 -2.13 16 2 C 0.04 0.63 5.53 -3.82 -0.02 0.61 16 3 N -0.52 -7.97 4.41 -236.07 -1.04 -9.01 16 4 C 0.05 0.88 4.78 -3.83 -0.02 0.86 16 5 C -0.10 -2.17 5.08 -26.74 -0.14 -2.31 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 11 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.03 0.37 5.28 -4.98 -0.03 0.35 16 16 C 0.51 6.36 7.25 -10.99 -0.08 6.28 16 17 O -0.49 -8.01 12.00 5.55 0.07 -7.95 16 18 N -0.68 -6.35 5.34 -9.88 -0.05 -6.40 16 19 C 0.19 2.07 6.28 -83.72 -0.53 1.54 16 20 C -0.19 -1.57 9.96 -39.37 -0.39 -1.96 16 21 C -0.06 -0.48 10.03 -39.63 -0.40 -0.88 16 22 C -0.23 -2.03 9.04 -39.40 -0.36 -2.39 16 23 C 0.15 1.69 6.68 -39.24 -0.26 1.43 16 24 O -0.31 -3.57 10.49 -19.43 -0.20 -3.78 16 25 C 0.03 0.18 9.81 101.05 0.99 1.17 16 26 C -0.16 -2.01 8.60 -39.25 -0.34 -2.35 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.54 6.16 -51.93 -0.32 0.22 16 29 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 30 H 0.08 1.34 6.82 -51.93 -0.35 0.99 16 31 H 0.08 1.32 5.81 -51.93 -0.30 1.02 16 32 H 0.04 0.63 5.86 -51.93 -0.30 0.32 16 33 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.00 6.97 -51.93 -0.36 0.63 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.64 6.07 -51.93 -0.32 0.33 16 40 H 0.11 1.07 7.87 -51.93 -0.41 0.66 16 41 H 0.41 2.32 8.82 -40.82 -0.36 1.96 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 45 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 46 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.15 2.21 6.38 -52.49 -0.33 1.88 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -34.77 383.04 -8.94 -43.71 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.43 Total: 0.14 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.77 Total: -13.06 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.36 Total: -41.92 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.14 Total: -11.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.77 -8.94 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198680892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.015 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds