Wall clock time and date at job start Tue Mar 31 2020 13:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46764 * 2 1 4 4 C 1.46899 * 111.00106 * 300.14599 * 3 2 1 5 5 C 1.53002 * 109.47009 * 288.95476 * 4 3 2 6 6 C 1.46907 * 111.00020 * 64.10116 * 3 2 1 7 7 C 1.52997 * 109.47236 * 66.04297 * 6 3 2 8 8 O 1.42900 * 109.47289 * 65.00033 * 7 6 3 9 9 C 1.35710 * 117.00428 * 180.02562 * 8 7 6 10 10 C 1.39020 * 119.90347 * 0.29818 * 9 8 7 11 11 C 1.37686 * 120.09210 * 180.25985 * 10 9 8 12 12 C 1.39797 * 119.90433 * 359.44183 * 11 10 9 13 13 C 1.47497 * 120.09207 * 180.30124 * 12 11 10 14 14 O 1.21623 * 119.99767 * 317.65215 * 13 12 11 15 15 N 1.34772 * 120.00273 * 137.65639 * 13 12 11 16 16 C 1.46498 * 120.00339 * 182.01487 * 15 13 12 17 17 C 1.36904 * 119.99686 * 2.01567 * 15 13 12 18 18 H 1.08004 * 120.00011 * 310.60516 * 17 15 13 19 19 C 1.39018 * 120.00135 * 130.60830 * 17 15 13 20 20 N 1.31383 * 120.00155 * 169.97106 * 19 17 15 21 21 Si 1.86798 * 120.00107 * 349.97589 * 19 17 15 22 22 H 1.48496 * 109.47403 * 94.40227 * 21 19 17 23 23 H 1.48503 * 109.47455 * 214.40550 * 21 19 17 24 24 H 1.48507 * 109.46895 * 334.40076 * 21 19 17 25 25 C 1.39796 * 119.81254 * 0.28443 * 12 11 10 26 26 C 1.37687 * 119.90765 * 359.97438 * 25 12 11 27 27 H 1.08996 * 109.47234 * 65.85264 * 1 2 3 28 28 H 1.09001 * 109.46698 * 185.85110 * 1 2 3 29 29 H 1.09003 * 109.46854 * 305.84435 * 1 2 3 30 30 H 1.08996 * 109.46898 * 240.00298 * 2 1 3 31 31 H 1.09001 * 109.47321 * 120.00025 * 2 1 3 32 32 H 1.08992 * 109.47193 * 48.95950 * 4 3 2 33 33 H 1.09004 * 109.46638 * 168.95994 * 4 3 2 34 34 H 1.09000 * 109.46970 * 183.58915 * 5 4 3 35 35 H 1.09004 * 109.47343 * 303.59347 * 5 4 3 36 36 H 1.09002 * 109.47012 * 63.59038 * 5 4 3 37 37 H 1.09004 * 109.46588 * 306.04258 * 6 3 2 38 38 H 1.08995 * 109.47079 * 186.04314 * 6 3 2 39 39 H 1.09005 * 109.47030 * 305.00018 * 7 6 3 40 40 H 1.08995 * 109.47186 * 185.00571 * 7 6 3 41 41 H 1.08001 * 119.94991 * 359.97438 * 10 9 8 42 42 H 1.07997 * 120.04831 * 179.71758 * 11 10 9 43 43 H 1.09003 * 109.46746 * 84.68741 * 16 15 13 44 44 H 1.08992 * 109.47199 * 204.68822 * 16 15 13 45 45 H 1.09000 * 109.47075 * 324.69247 * 16 15 13 46 46 H 0.97005 * 120.00166 * 179.97438 * 20 19 17 47 47 H 1.08010 * 120.04581 * 180.02562 * 25 12 11 48 48 H 1.07999 * 119.95258 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5457 2.1109 -1.1859 5 6 2.2682 1.5854 -2.4280 6 6 1.6303 2.0810 1.2337 7 6 2.3444 1.4425 2.4267 8 8 3.7532 1.6488 2.3047 9 6 4.5379 1.1404 3.2883 10 6 3.9608 0.4499 4.3480 11 6 4.7528 -0.0630 5.3507 12 6 6.1400 0.1013 5.2961 13 6 6.9928 -0.4522 6.3647 14 8 6.6547 -0.3474 7.5283 15 7 8.1469 -1.0740 6.0518 16 6 8.9721 -1.6625 7.1095 17 6 8.5480 -1.1556 4.7453 18 1 7.8576 -1.4987 3.9889 19 6 9.8439 -0.7970 4.3923 20 7 10.2920 -1.0581 3.1852 21 14 10.9481 0.0560 5.6343 22 1 11.7831 -0.9552 6.3310 23 1 11.8273 1.0249 4.9318 24 1 10.1116 0.7766 6.6275 25 6 6.7166 0.7914 4.2258 26 6 5.9168 1.3057 3.2300 27 1 -0.3633 0.4204 -0.9377 28 1 -0.3633 -1.0223 0.1048 29 1 -0.3633 0.6018 0.8331 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4722 1.9604 -1.2991 33 1 1.7531 3.1745 -1.0677 34 1 1.9639 2.1666 -3.2985 35 1 3.3453 1.6775 -2.2880 36 1 2.0102 0.5377 -2.5824 37 1 0.5518 2.0016 1.3708 38 1 1.9110 3.1318 1.1622 39 1 2.1342 0.3731 2.4461 40 1 1.9889 1.8994 3.3501 41 1 2.8894 0.3196 4.3870 42 1 4.3033 -0.5954 6.1759 43 1 8.6098 -2.6649 7.3376 44 1 10.0076 -1.7180 6.7739 45 1 8.9128 -1.0424 8.0040 46 1 11.1962 -0.8075 2.9388 47 1 7.7880 0.9202 4.1797 48 1 6.3615 1.8386 2.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263649787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:33 Heat of formation + Delta-G solvation = -45.938376 kcal Electronic energy + Delta-G solvation = -27131.441697 eV Core-core repulsion = 23379.792549 eV Total energy + Delta-G solvation = -3751.649147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36648 -40.50779 -39.29732 -37.75287 -36.84141 -33.95730 -32.87166 -32.04421 -31.85569 -30.96895 -28.56874 -28.12875 -26.81890 -25.33832 -24.17442 -23.69741 -22.54616 -21.08037 -20.57033 -19.55210 -19.01248 -18.10736 -17.59424 -17.24526 -16.91685 -16.49316 -16.37668 -16.00958 -15.83591 -15.41223 -15.03619 -14.82560 -14.66428 -14.53139 -14.33414 -14.09145 -14.04656 -13.91523 -13.52598 -13.34009 -13.27082 -13.05929 -12.93740 -12.84071 -12.75639 -12.36704 -12.28639 -12.19809 -11.98718 -11.93260 -11.68548 -11.57498 -11.31586 -11.18204 -10.63939 -9.92823 -9.63779 -9.13136 -9.05439 -8.47328 -6.25510 0.21400 0.49597 1.21331 1.32743 1.43599 1.92489 2.18603 2.27944 2.63742 2.82075 2.97581 3.06833 3.83334 3.92902 4.00239 4.02805 4.08621 4.14988 4.29868 4.31396 4.37480 4.38364 4.41502 4.47924 4.48657 4.54939 4.57351 4.65113 4.68940 4.75625 4.76017 4.83796 4.94828 5.03174 5.13211 5.14053 5.16151 5.27649 5.30398 5.37736 5.46046 5.46537 5.66627 5.82310 6.08436 6.17439 6.20557 6.21356 6.55526 6.92657 7.30901 7.69689 8.64579 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.002912 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.298208 B = 9611.622952 C =10474.878716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 N -0.552 5.552 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.055 3.945 7 C 0.052 3.948 8 O -0.306 6.306 9 C 0.151 3.849 10 C -0.215 4.215 11 C -0.042 4.042 12 C -0.169 4.169 13 C 0.524 3.476 14 O -0.617 6.617 15 N -0.478 5.478 16 C 0.072 3.928 17 C -0.335 4.335 18 H 0.075 0.925 19 C 0.036 3.964 20 N -0.897 5.897 21 Si 0.927 3.073 22 H -0.254 1.254 23 H -0.281 1.281 24 H -0.270 1.270 25 C -0.021 4.021 26 C -0.176 4.176 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.132 0.868 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.281 0.719 47 H 0.125 0.875 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 5.722 -7.880 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.086 4.086 3 N -0.276 5.276 4 C -0.080 4.080 5 C -0.203 4.203 6 C -0.072 4.072 7 C -0.023 4.023 8 O -0.219 6.219 9 C 0.104 3.896 10 C -0.234 4.234 11 C -0.061 4.061 12 C -0.172 4.172 13 C 0.316 3.684 14 O -0.504 6.504 15 N -0.199 5.199 16 C -0.070 4.070 17 C -0.463 4.463 18 H 0.092 0.908 19 C -0.169 4.169 20 N -0.533 5.533 21 Si 0.752 3.248 22 H -0.179 1.179 23 H -0.207 1.207 24 H -0.195 1.195 25 C -0.040 4.040 26 C -0.194 4.194 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.143 0.857 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.459 5.843 -7.660 20.822 hybrid contribution 0.206 -0.075 0.483 0.530 sum -18.253 5.768 -7.177 20.444 Atomic orbital electron populations 1.22367 0.96824 1.03013 1.02327 1.22223 0.93848 0.89972 1.02585 1.62189 1.60483 1.02636 1.02289 1.22151 0.97899 0.98089 0.89850 1.21746 1.00580 1.01133 0.96878 1.22235 0.97998 0.98863 0.88154 1.23190 0.77831 1.01583 0.99680 1.86122 1.19490 1.72772 1.43554 1.19188 0.90556 0.92132 0.87694 1.21235 1.01263 1.05191 0.95700 1.21020 0.91116 0.96247 0.97719 1.19717 0.94376 1.05630 0.97521 1.18832 0.83267 0.78371 0.87957 1.90592 1.75332 1.63178 1.21322 1.43641 1.20176 1.48814 1.07244 1.21879 0.95052 0.98791 0.91290 1.18733 0.98721 1.45990 0.82828 0.90782 1.25943 0.98299 0.95454 0.97208 1.69728 1.18502 1.44580 1.20523 0.86076 0.79390 0.79653 0.79666 1.17935 1.20742 1.19476 1.21277 1.00079 0.91989 0.90638 1.20424 0.91022 1.06622 1.01351 0.91944 0.91444 0.91864 0.90920 0.91482 0.93077 0.90827 0.91076 0.93504 0.92939 0.90011 0.89665 0.91330 0.89827 0.82186 0.85019 0.91714 0.91820 0.91838 0.90885 0.85673 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 9.23 71.98 0.66 -1.52 16 2 C 0.04 0.69 5.71 86.30 0.49 1.18 16 3 N -0.55 -10.05 4.62 -896.22 -4.14 -14.19 16 4 C 0.05 0.70 5.51 86.30 0.48 1.17 16 5 C -0.15 -2.23 9.87 71.98 0.71 -1.52 16 6 C 0.06 0.85 5.17 86.30 0.45 1.30 16 7 C 0.05 0.99 4.80 71.98 0.35 1.33 16 8 O -0.31 -8.65 10.07 -90.31 -0.91 -9.56 16 9 C 0.15 4.93 6.70 22.64 0.15 5.08 16 10 C -0.22 -6.54 9.01 22.33 0.20 -6.33 16 11 C -0.04 -1.55 9.65 22.52 0.22 -1.33 16 12 C -0.17 -7.55 5.28 -20.08 -0.11 -7.65 16 13 C 0.52 26.18 7.27 86.68 0.63 26.81 16 14 O -0.62 -32.50 16.61 -4.10 -0.07 -32.57 16 15 N -0.48 -23.97 2.40 -662.58 -1.59 -25.56 16 16 C 0.07 3.17 8.84 127.77 1.13 4.30 16 17 C -0.33 -17.80 6.61 84.09 0.56 -17.25 16 18 H 0.07 4.33 7.49 -2.91 -0.02 4.31 16 19 C 0.04 1.88 5.16 84.95 0.44 2.32 16 20 N -0.90 -49.40 13.96 21.68 0.30 -49.10 16 21 Si 0.93 41.72 24.89 68.60 1.71 43.43 16 22 H -0.25 -10.62 6.88 99.48 0.68 -9.93 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.27 -12.58 7.05 99.48 0.70 -11.87 16 25 C -0.02 -0.92 8.09 22.52 0.18 -0.74 16 26 C -0.18 -6.62 9.97 22.32 0.22 -6.39 16 27 H 0.06 0.68 6.49 -2.39 -0.02 0.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.66 6.12 -2.39 -0.01 0.65 16 30 H 0.07 1.27 6.74 -2.39 -0.02 1.25 16 31 H 0.07 1.24 6.20 -2.39 -0.01 1.22 16 32 H 0.05 0.61 5.90 -2.39 -0.01 0.60 16 33 H 0.07 1.05 7.83 -2.39 -0.02 1.03 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.79 6.88 -2.39 -0.02 0.78 16 37 H 0.08 0.89 6.03 -2.38 -0.01 0.87 16 38 H 0.08 1.34 7.87 -2.39 -0.02 1.32 16 39 H 0.07 1.24 5.75 -2.38 -0.01 1.23 16 40 H 0.08 1.28 7.67 -2.39 -0.02 1.26 16 41 H 0.16 3.53 6.28 -2.91 -0.02 3.52 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.06 2.72 4.28 -2.39 -0.01 2.71 16 45 H 0.06 2.71 7.56 -2.39 -0.02 2.69 16 46 H 0.28 14.40 8.31 -92.70 -0.77 13.63 16 47 H 0.13 6.00 6.27 -2.91 -0.02 5.98 16 48 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -65.27 372.81 2.99 -62.28 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.94 Total: 24.50 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 6.76 Total: 0.76 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -5.43 Total: -88.85 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.98 Total: -42.13 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.71 Total: 43.43 kcal Total: -65.27 2.99 -62.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263649787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.339 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds