Wall clock time and date at job start Tue Mar 31 2020 13:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47499 * 2 1 4 4 C 1.46500 * 120.00179 * 269.99873 * 3 2 1 5 5 C 1.50697 * 109.47228 * 269.99688 * 4 3 2 6 6 H 1.08002 * 119.99803 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00119 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99756 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00145 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47367 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47000 * 210.00469 * 9 7 5 12 12 H 1.48501 * 109.46935 * 330.00242 * 9 7 5 13 13 C 1.34780 * 120.00139 * 89.99965 * 3 2 1 14 14 O 1.21589 * 120.00392 * 180.02562 * 13 3 2 15 15 N 1.34788 * 119.99607 * 359.97438 * 13 3 2 16 16 C 1.39937 * 119.99406 * 184.59298 * 15 13 3 17 17 C 1.38926 * 120.04237 * 144.88676 * 16 15 13 18 18 C 1.38114 * 120.04506 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.12207 * 359.72187 * 18 17 16 20 20 C 1.38765 * 120.08562 * 0.55346 * 19 18 17 21 21 O 1.35893 * 120.02308 * 179.71874 * 20 19 18 22 22 C 1.42900 * 117.00133 * 359.73042 * 21 20 19 23 23 C 1.53005 * 109.46980 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47016 * 64.99921 * 23 22 21 25 25 C 1.53001 * 109.46702 * 184.99596 * 23 22 21 26 26 C 1.38631 * 119.95398 * 359.44785 * 20 19 18 27 27 H 1.09001 * 109.47004 * 300.00641 * 1 2 3 28 28 H 1.09003 * 109.46824 * 59.99380 * 1 2 3 29 29 H 1.08993 * 109.47619 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47237 * 240.00029 * 2 1 3 31 31 H 1.09003 * 109.47264 * 120.00315 * 2 1 3 32 32 H 1.09003 * 109.46796 * 30.00282 * 4 3 2 33 33 H 1.08999 * 109.46775 * 149.99871 * 4 3 2 34 34 H 0.97002 * 119.99291 * 179.97438 * 8 7 5 35 35 H 0.96992 * 120.00191 * 4.59206 * 15 13 3 36 36 H 1.08008 * 119.97411 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.94241 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.96036 * 180.27139 * 19 18 17 39 39 H 1.08997 * 109.47599 * 59.99530 * 22 21 20 40 40 H 1.09000 * 109.46702 * 299.99725 * 22 21 20 41 41 H 1.08996 * 109.46973 * 304.99419 * 23 22 21 42 42 H 1.08999 * 109.46956 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47373 * 299.99658 * 24 23 22 44 44 H 1.08996 * 109.47659 * 59.99919 * 24 23 22 45 45 H 1.08993 * 109.47402 * 60.00084 * 25 23 22 46 46 H 1.08998 * 109.47187 * 179.97438 * 25 23 22 47 47 H 1.08996 * 109.47262 * 299.99646 * 25 23 22 48 48 H 1.07998 * 120.05833 * 180.25990 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0960 7 6 4.1493 2.3896 -2.8778 8 7 3.3493 3.1257 -3.6180 9 14 5.9133 2.0955 -3.4174 10 1 5.9762 0.8743 -4.2600 11 1 6.3925 3.2626 -4.2006 12 1 6.7736 1.9157 -2.2204 13 6 2.2431 2.0165 1.1672 14 8 2.6480 3.1630 1.1673 15 7 2.0179 1.3813 2.3345 16 6 2.1586 2.0702 3.5444 17 6 1.3156 1.7826 4.6106 18 6 1.4541 2.4629 5.8045 19 6 2.4346 3.4270 5.9439 20 6 3.2757 3.7225 4.8805 21 8 4.2356 4.6746 5.0171 22 6 4.3184 5.3358 6.2812 23 6 5.4495 6.3656 6.2450 24 6 5.1075 7.4634 5.2357 25 6 5.6200 6.9848 7.6337 26 6 3.1397 3.0417 3.6805 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1383 34 1 3.6755 3.5161 -4.4439 35 1 1.7583 0.4467 2.3358 36 1 0.5510 1.0271 4.5054 37 1 0.7976 2.2383 6.6322 38 1 2.5434 3.9543 6.8802 39 1 4.5199 4.6027 7.0622 40 1 3.3746 5.8393 6.4903 41 1 6.3772 5.8760 5.9491 42 1 5.9134 8.1968 5.2096 43 1 4.9860 7.0223 4.2464 44 1 4.1797 7.9530 5.5316 45 1 5.8635 6.2027 8.3528 46 1 6.4260 7.7181 7.6082 47 1 4.6922 7.4743 7.9297 48 1 3.7962 3.2674 2.8532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267452598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:46 Heat of formation + Delta-G solvation = -46.357714 kcal Electronic energy + Delta-G solvation = -27007.201516 eV Core-core repulsion = 23255.534185 eV Total energy + Delta-G solvation = -3751.667331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44612 -39.51142 -37.64074 -35.56488 -35.25943 -34.07296 -32.66005 -30.31696 -30.08963 -29.15641 -27.35009 -26.91801 -26.50679 -23.42870 -23.05955 -22.44308 -21.63640 -20.33457 -19.26594 -18.47686 -17.29580 -16.45686 -16.29765 -16.04531 -15.84927 -15.56213 -15.00351 -14.65569 -14.36634 -14.18009 -13.71697 -13.69433 -13.50715 -13.25691 -13.17116 -12.82432 -12.55916 -12.42319 -12.26913 -12.05864 -11.77549 -11.71228 -11.41992 -11.32051 -11.25443 -11.19318 -10.92503 -10.79735 -10.76616 -10.69421 -10.51553 -10.10593 -9.91843 -9.62228 -9.18712 -8.41213 -8.16986 -7.93015 -7.58628 -6.01958 -4.06441 1.49200 1.61508 3.04459 3.32046 3.36614 3.39115 3.44963 3.72864 4.10510 4.38578 4.51899 4.57331 4.61810 4.86671 4.93610 5.08109 5.20098 5.22519 5.25394 5.31681 5.32243 5.33314 5.46607 5.52756 5.57236 5.64339 5.64841 5.70813 5.73038 5.84893 5.92874 6.02931 6.09533 6.19268 6.22289 6.41884 6.42369 6.46088 6.56461 6.64236 6.88924 7.18234 7.37597 7.52905 7.60568 7.69168 7.96174 8.25469 8.59638 8.94383 9.26034 9.58957 11.05944 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003441 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.344067 B = 8135.462509 C =10274.823325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.697 3.303 14 O -0.564 6.564 15 N -0.695 5.695 16 C 0.217 3.783 17 C -0.193 4.193 18 C -0.064 4.064 19 C -0.237 4.237 20 C 0.148 3.852 21 O -0.309 6.309 22 C 0.065 3.935 23 C -0.096 4.096 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.155 4.155 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -1.380 21.443 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.341 5.341 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.399 3.601 14 O -0.439 6.439 15 N -0.345 5.345 16 C 0.120 3.880 17 C -0.214 4.214 18 C -0.083 4.083 19 C -0.257 4.257 20 C 0.102 3.898 21 O -0.223 6.223 22 C -0.011 4.011 23 C -0.115 4.115 24 C -0.206 4.206 25 C -0.202 4.202 26 C -0.176 4.176 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.645 -0.364 20.962 21.132 hybrid contribution 0.630 -0.696 -0.205 0.961 sum -2.015 -1.060 20.757 20.882 Atomic orbital electron populations 1.22247 0.96662 1.01438 1.02588 1.21369 0.93600 0.84349 1.02414 1.47625 1.67014 1.13275 1.06219 1.19233 0.96212 0.93534 0.76886 1.21456 0.96997 1.31866 1.06192 0.92477 1.24922 0.97823 0.94916 0.96404 1.69935 1.35682 1.33445 1.14335 0.86502 0.84753 0.77628 0.78576 1.20697 1.21089 1.19893 1.15960 0.79213 0.84830 0.80090 1.90911 1.50938 1.16687 1.85390 1.42999 1.73590 1.14237 1.03658 1.17191 0.92598 0.93222 0.84948 1.20735 1.01315 1.05323 0.94047 1.20565 0.96623 0.94527 0.96598 1.21089 1.01060 1.04579 0.98955 1.18761 0.88430 0.88946 0.93658 1.86095 1.51447 1.49413 1.35294 1.22866 0.99306 0.94455 0.84461 1.21130 0.98306 0.95523 0.96507 1.21830 1.01173 0.97745 0.99867 1.21775 1.02198 1.00831 0.95391 1.20630 1.00755 0.99231 0.97008 0.93043 0.91814 0.92107 0.89493 0.92488 0.94791 0.93711 0.92734 0.76010 0.85959 0.85878 0.86017 0.92260 0.92141 0.90025 0.92576 0.91373 0.92786 0.92479 0.91786 0.92407 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.61 -12.89 2.46 -180.80 -0.44 -13.34 16 4 C 0.26 6.82 5.16 -5.20 -0.03 6.80 16 5 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.70 15.12 8.12 -86.90 -0.71 14.41 16 14 O -0.56 -14.71 13.36 5.29 0.07 -14.64 16 15 N -0.70 -11.62 5.22 -14.24 -0.07 -11.69 16 16 C 0.22 3.57 6.30 -83.71 -0.53 3.05 16 17 C -0.19 -2.51 9.96 -39.37 -0.39 -2.90 16 18 C -0.06 -0.76 10.03 -39.64 -0.40 -1.15 16 19 C -0.24 -3.02 9.04 -39.40 -0.36 -3.38 16 20 C 0.15 2.34 6.68 -39.24 -0.26 2.08 16 21 O -0.31 -4.71 9.67 -19.40 -0.19 -4.90 16 22 C 0.06 0.70 4.12 37.16 0.15 0.85 16 23 C -0.10 -0.92 3.16 -90.62 -0.29 -1.20 16 24 C -0.15 -1.54 9.09 37.16 0.34 -1.20 16 25 C -0.14 -1.01 9.19 37.16 0.34 -0.67 16 26 C -0.15 -2.85 8.63 -39.25 -0.34 -3.19 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.40 5.32 6.52 -40.82 -0.27 5.06 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.24 6.29 -52.48 -0.33 0.91 16 39 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 40 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.15 3.33 6.22 -52.49 -0.33 3.00 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -33.94 392.89 -9.39 -43.33 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.87 Total: 4.58 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.52 Total: -0.36 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.22 Total: -51.00 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.12 Total: -19.54 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.94 -9.39 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267452598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.024 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds