Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99524 * 2 1 4 4 C 1.50706 * 109.46648 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99567 * 270.01636 * 4 3 2 6 6 C 1.38209 * 119.99373 * 179.97438 * 5 4 3 7 7 C 1.38257 * 120.00411 * 359.81910 * 6 5 4 8 8 C 1.38211 * 119.99764 * 0.41408 * 7 6 5 9 9 C 1.50697 * 120.00023 * 179.81114 * 8 7 6 10 10 N 1.46502 * 109.47381 * 269.73017 * 9 8 7 11 11 C 1.34779 * 120.00251 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99744 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99954 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.47338 * 180.02562 * 13 11 10 15 15 C 1.46904 * 110.99837 * 66.04234 * 14 13 11 16 16 C 1.46897 * 111.00395 * 189.99861 * 14 13 11 17 17 H 1.08997 * 109.47139 * 300.00200 * 16 14 13 18 18 C 1.53000 * 109.46761 * 59.99587 * 16 14 13 19 19 C 1.50693 * 109.47362 * 179.97438 * 16 14 13 20 20 H 1.08009 * 120.00046 * 354.31814 * 19 16 14 21 21 C 1.37876 * 120.00344 * 174.32365 * 19 16 14 22 22 N 1.31513 * 120.00472 * 155.04852 * 21 19 16 23 23 Si 1.86809 * 119.99627 * 335.31965 * 21 19 16 24 24 H 1.48494 * 109.46841 * 179.72766 * 23 21 19 25 25 H 1.48497 * 109.46901 * 299.72684 * 23 21 19 26 26 H 1.48501 * 109.46726 * 59.72958 * 23 21 19 27 27 C 1.38213 * 120.00244 * 90.00281 * 4 3 2 28 28 H 1.09006 * 109.46771 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47283 * 300.00071 * 1 2 3 30 30 H 1.09001 * 109.47334 * 59.99905 * 1 2 3 31 31 H 1.08992 * 109.47337 * 60.00303 * 3 2 1 32 32 H 1.09000 * 109.47147 * 299.99413 * 3 2 1 33 33 H 1.07994 * 120.00225 * 0.02562 * 5 4 3 34 34 H 1.08011 * 119.99706 * 180.02562 * 6 5 4 35 35 H 1.08007 * 120.00016 * 180.23041 * 7 6 5 36 36 H 1.08996 * 109.47321 * 149.72511 * 9 8 7 37 37 H 1.09007 * 109.46922 * 29.72663 * 9 8 7 38 38 H 0.96999 * 119.99767 * 0.02562 * 10 9 8 39 39 H 1.08996 * 109.47402 * 59.99855 * 13 11 10 40 40 H 1.09007 * 109.47005 * 299.99906 * 13 11 10 41 41 H 1.09002 * 109.46603 * 183.95579 * 15 14 13 42 42 H 1.08996 * 109.47049 * 303.95494 * 15 14 13 43 43 H 1.08994 * 109.47094 * 63.95767 * 15 14 13 44 44 H 1.09001 * 109.47132 * 51.91876 * 18 16 14 45 45 H 1.09002 * 109.46962 * 171.91728 * 18 16 14 46 46 H 1.08998 * 109.47417 * 291.91531 * 18 16 14 47 47 H 0.97000 * 119.99785 * 355.21976 * 22 21 19 48 48 H 1.08004 * 119.99785 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2020 1.1314 1.1965 6 6 5.5798 1.0217 1.1959 7 6 6.2681 0.9634 -0.0017 8 6 5.5792 1.0234 -1.1984 9 6 6.3298 0.9641 -2.5037 10 7 6.6817 2.3218 -2.9269 11 6 7.3616 2.5152 -4.0745 12 8 7.6816 1.5651 -4.7571 13 6 7.7230 3.9118 -4.5099 14 7 8.4549 3.8541 -5.7824 15 6 7.5912 3.3630 -6.8645 16 6 9.0285 5.1637 -6.1198 17 1 8.2285 5.8984 -6.2097 18 6 9.9962 5.5960 -5.0164 19 6 9.7703 5.0653 -7.4278 20 1 9.8901 4.1062 -7.9098 21 6 10.2962 6.1995 -8.0091 22 7 11.3180 6.1036 -8.8315 23 14 9.5620 7.8732 -7.6228 24 1 10.3059 8.9230 -8.3641 25 1 8.1350 7.8944 -8.0331 26 1 9.6616 8.1325 -6.1640 27 6 4.2010 1.1322 -1.1979 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6640 1.1732 2.1320 34 1 6.1185 0.9782 2.1311 35 1 7.3445 0.8740 -0.0021 36 1 5.7019 0.4981 -3.2631 37 1 7.2390 0.3769 -2.3737 38 1 6.4261 3.0816 -2.3807 39 1 8.3504 4.3783 -3.7504 40 1 6.8136 4.4985 -4.6405 41 1 8.1759 3.2634 -7.7791 42 1 7.1798 2.3921 -6.5888 43 1 6.7774 4.0692 -7.0287 44 1 10.7125 4.7964 -4.8275 45 1 10.5284 6.4937 -5.3311 46 1 9.4372 5.8060 -4.1045 47 1 11.7457 5.2450 -8.9755 48 1 3.6622 1.1747 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268292953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = -44.112394 kcal Electronic energy + Delta-G solvation = -26175.947775 eV Core-core repulsion = 22424.377808 eV Total energy + Delta-G solvation = -3751.569967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18542 -39.36010 -38.02933 -36.67772 -34.91134 -32.69586 -32.41633 -31.61692 -29.94984 -28.37070 -27.72148 -26.05817 -25.75007 -24.27288 -23.47641 -22.43697 -21.07185 -20.38966 -19.20638 -17.56837 -17.19688 -16.82891 -16.60898 -16.51978 -16.00143 -15.68231 -15.61140 -15.16365 -14.47430 -14.44505 -13.99137 -13.85242 -13.53179 -13.25442 -13.08659 -12.99430 -12.83928 -12.69267 -12.44469 -12.26753 -11.92605 -11.79834 -11.48153 -11.39076 -11.30458 -11.15863 -10.89114 -10.52481 -10.34840 -10.18142 -10.11596 -9.83879 -9.53766 -9.23945 -9.03938 -8.99758 -8.87743 -8.16820 -7.30105 -6.44613 -3.98609 0.83353 0.97231 2.94186 3.01231 3.39106 3.40584 3.43496 3.61337 3.76349 4.28315 4.38804 4.49867 4.52178 4.72125 4.77140 4.82750 4.90598 4.91551 4.93514 5.08128 5.09090 5.14808 5.21936 5.23695 5.34815 5.52996 5.65756 5.67629 5.71471 5.72406 6.06017 6.15403 6.21223 6.23897 6.32723 6.42385 6.47683 6.57645 6.58891 6.65263 6.71331 6.91752 7.01669 7.33628 7.55717 7.79542 8.05131 8.35109 8.47162 8.52900 9.04427 9.65102 10.94010 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.002138 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.044871 B =13093.570110 C =13315.801384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.102 3.898 4 C -0.096 4.096 5 C -0.093 4.093 6 C -0.124 4.124 7 C -0.092 4.092 8 C -0.106 4.106 9 C 0.163 3.837 10 N -0.737 5.737 11 C 0.514 3.486 12 O -0.516 6.516 13 C 0.030 3.970 14 N -0.511 5.511 15 C 0.036 3.964 16 C 0.191 3.809 17 H -0.011 1.011 18 C -0.141 4.141 19 C -0.596 4.596 20 H 0.067 0.933 21 C 0.036 3.964 22 N -0.897 5.897 23 Si 1.035 2.965 24 H -0.285 1.285 25 H -0.286 1.286 26 H -0.279 1.279 27 C -0.079 4.079 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.006 0.994 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.271 0.729 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.940 -8.465 23.165 31.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.026 3.974 4 C -0.096 4.096 5 C -0.111 4.111 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.040 3.960 10 N -0.392 5.392 11 C 0.301 3.699 12 O -0.390 6.390 13 C -0.102 4.102 14 N -0.236 5.236 15 C -0.112 4.112 16 C 0.084 3.916 17 H 0.007 0.993 18 C -0.199 4.199 19 C -0.634 4.634 20 H 0.085 0.915 21 C -0.170 4.170 22 N -0.530 5.530 23 Si 0.863 3.137 24 H -0.211 1.211 25 H -0.212 1.212 26 H -0.205 1.205 27 C -0.097 4.097 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.081 0.919 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.063 -8.056 22.274 30.405 hybrid contribution -1.171 -0.449 0.699 1.436 sum -20.234 -8.505 22.973 31.773 Atomic orbital electron populations 1.22779 0.80818 1.02991 1.00082 1.87982 1.19738 1.27333 1.95418 1.21351 0.89796 0.85208 1.01058 1.19552 0.94014 1.02536 0.93518 1.21080 0.94373 0.98254 0.97423 1.21157 0.94166 1.00662 0.98202 1.21200 1.00263 0.97849 0.91792 1.19915 0.93694 1.02129 0.94895 1.20102 0.98886 0.84962 0.92084 1.46130 1.59671 1.08342 1.25075 1.20980 0.76647 0.92332 0.79933 1.90666 1.51882 1.43460 1.53019 1.22053 0.98592 0.92357 0.97178 1.61778 1.32424 1.29437 0.99920 1.22327 0.94763 0.98205 0.95876 1.19618 0.92213 0.84049 0.95734 0.99320 1.22196 0.99990 1.01090 0.96642 1.21879 1.38696 0.96607 1.06218 0.91531 1.25623 0.93978 1.02845 0.94548 1.70831 1.16960 1.28191 1.36973 0.84161 0.76342 0.76703 0.76483 1.21051 1.21246 1.20539 1.20999 0.93504 0.97524 0.97721 0.89440 0.94003 0.93880 0.92338 0.92254 0.85928 0.85589 0.85508 0.90820 0.90649 0.76799 0.88102 0.93165 0.90380 0.91869 0.97600 0.92778 0.92695 0.96248 0.91945 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.39 10.69 -35.23 -0.38 -3.77 16 3 C 0.10 0.73 6.06 36.01 0.22 0.95 16 4 C -0.10 -0.81 5.51 -104.62 -0.58 -1.39 16 5 C -0.09 -0.71 9.70 -39.58 -0.38 -1.10 16 6 C -0.12 -0.93 10.05 -39.59 -0.40 -1.32 16 7 C -0.09 -0.77 9.70 -39.58 -0.38 -1.16 16 8 C -0.11 -0.97 5.25 -104.63 -0.55 -1.52 16 9 C 0.16 1.78 5.80 -5.19 -0.03 1.75 16 10 N -0.74 -8.73 5.55 -61.47 -0.34 -9.07 16 11 C 0.51 8.41 7.52 -10.99 -0.08 8.32 16 12 O -0.52 -10.52 14.33 5.56 0.08 -10.44 16 13 C 0.03 0.51 5.26 -4.98 -0.03 0.49 16 14 N -0.51 -11.35 4.36 -237.74 -1.04 -12.38 16 15 C 0.04 0.79 8.89 60.07 0.53 1.32 16 16 C 0.19 4.62 1.66 -68.87 -0.11 4.51 16 17 H -0.01 -0.25 6.70 -51.93 -0.35 -0.60 16 18 C -0.14 -3.13 8.47 37.16 0.31 -2.81 16 19 C -0.60 -16.89 7.98 -34.44 -0.27 -17.17 16 20 H 0.07 2.07 6.88 -52.48 -0.36 1.71 16 21 C 0.04 1.05 5.15 -17.82 -0.09 0.96 16 22 N -0.90 -27.47 13.70 55.43 0.76 -26.71 16 23 Si 1.03 24.98 26.49 -169.99 -4.50 20.48 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.23 6.30 56.52 0.36 -5.87 16 27 C -0.08 -0.71 9.36 -39.59 -0.37 -1.08 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.40 3.75 8.46 -40.82 -0.35 3.40 16 39 H 0.10 1.59 6.00 -51.93 -0.31 1.28 16 40 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.08 1.86 6.34 -51.93 -0.33 1.53 16 42 H 0.06 1.32 5.82 -51.93 -0.30 1.02 16 43 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 1.26 5.67 -51.93 -0.29 0.97 16 46 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 47 H 0.27 8.32 8.73 -40.82 -0.36 7.97 16 48 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -34.14 387.64 -8.42 -42.56 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.74 Total: 1.46 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.10 Total: -7.97 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.62 Total: -48.16 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.30 Total: -14.21 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.50 Total: 20.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.14 -8.42 -42.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268292953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds