Wall clock time and date at job start Tue Mar 31 2020 12:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99907 * 2 1 4 4 C 1.38753 * 120.05607 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94426 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05502 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11175 * 359.73920 * 6 5 4 8 8 C 1.38167 * 120.05299 * 0.51574 * 7 6 5 9 9 C 1.50707 * 120.02527 * 179.77092 * 8 7 6 10 10 H 1.09004 * 109.46475 * 212.86343 * 9 8 7 11 11 C 1.52996 * 109.47362 * 92.86192 * 9 8 7 12 12 N 1.46495 * 109.46818 * 332.85966 * 9 8 7 13 13 C 1.34778 * 120.00100 * 207.27781 * 12 9 8 14 14 O 1.21282 * 119.99877 * 0.02562 * 13 12 9 15 15 C 1.50696 * 120.00217 * 180.02562 * 13 12 9 16 16 N 1.46900 * 109.47034 * 179.97438 * 15 13 12 17 17 C 1.46897 * 111.00052 * 66.04430 * 16 15 13 18 18 C 1.46909 * 110.99868 * 189.99475 * 16 15 13 19 19 H 1.08998 * 109.47221 * 300.00234 * 18 16 15 20 20 C 1.53000 * 109.46957 * 60.00042 * 18 16 15 21 21 C 1.50701 * 109.46988 * 179.97438 * 18 16 15 22 22 H 1.07994 * 119.99912 * 0.02562 * 21 18 16 23 23 C 1.37880 * 119.99652 * 179.97438 * 21 18 16 24 24 N 1.31516 * 119.99723 * 180.02562 * 23 21 18 25 25 Si 1.86796 * 120.00160 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.47395 * 89.99518 * 25 23 21 27 27 H 1.48500 * 109.46844 * 209.99707 * 25 23 21 28 28 H 1.48502 * 109.47024 * 329.99680 * 25 23 21 29 29 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47083 * 299.99696 * 1 2 3 31 31 H 1.08996 * 109.47377 * 59.99576 * 1 2 3 32 32 H 1.08000 * 120.02539 * 359.95209 * 4 3 2 33 33 H 1.08006 * 119.97345 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94146 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.97427 * 180.25514 * 7 6 5 36 36 H 1.08996 * 109.47134 * 300.00114 * 11 9 8 37 37 H 1.09003 * 109.46594 * 60.00183 * 11 9 8 38 38 H 1.08999 * 109.46949 * 179.97438 * 11 9 8 39 39 H 0.97002 * 120.00139 * 27.28076 * 12 9 8 40 40 H 1.09001 * 109.47576 * 59.99377 * 15 13 12 41 41 H 1.09004 * 109.46787 * 299.99387 * 15 13 12 42 42 H 1.09007 * 109.47147 * 183.94967 * 17 16 15 43 43 H 1.08998 * 109.47105 * 303.95121 * 17 16 15 44 44 H 1.08997 * 109.47632 * 63.95799 * 17 16 15 45 45 H 1.09002 * 109.47468 * 59.99951 * 20 18 16 46 46 H 1.08999 * 109.46963 * 179.97438 * 20 18 16 47 47 H 1.09000 * 109.46852 * 300.00114 * 20 18 16 48 48 H 0.96996 * 120.00056 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0049 8 6 3.4311 1.2848 -0.0009 9 6 4.2537 0.0221 -0.0014 10 1 3.7309 -0.7519 -0.5633 11 6 4.4664 -0.4486 1.4387 12 7 5.5525 0.2858 -0.6258 13 6 6.2228 -0.7127 -1.2342 14 8 5.7506 -1.8294 -1.2652 15 6 7.5590 -0.4417 -1.8760 16 7 8.0798 -1.6824 -2.4654 17 6 7.2385 -2.1273 -3.5844 18 6 9.4765 -1.5177 -2.8900 19 1 9.5388 -0.7241 -3.6345 20 6 10.3375 -1.1504 -1.6798 21 6 9.9753 -2.8081 -3.4876 22 1 9.3202 -3.6647 -3.5465 23 6 11.2677 -2.8948 -3.9601 24 7 11.7029 -4.0208 -4.4821 25 14 12.4006 -1.4130 -3.8589 26 1 13.1347 -1.4384 -2.5683 27 1 13.3716 -1.4547 -4.9816 28 1 11.5960 -0.1679 -3.9462 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.2128 2.3203 0.0002 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0005 35 1 5.1344 2.5752 0.0086 36 1 4.9891 0.3254 2.0006 37 1 3.5000 -0.6447 1.9032 38 1 5.0610 -1.3621 1.4383 39 1 5.9300 1.1790 -0.6013 40 1 8.2569 -0.0770 -1.1223 41 1 7.4414 0.3102 -2.6564 42 1 7.6055 -3.0836 -3.9572 43 1 6.2098 -2.2412 -3.2425 44 1 7.2759 -1.3874 -4.3838 45 1 10.2753 -1.9440 -0.9352 46 1 11.3739 -1.0287 -1.9948 47 1 9.9768 -0.2172 -1.2472 48 1 12.6122 -4.0819 -4.8142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268336064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:56 Heat of formation + Delta-G solvation = -20.839455 kcal Electronic energy + Delta-G solvation = -27229.562353 eV Core-core repulsion = 23479.001577 eV Total energy + Delta-G solvation = -3750.560776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79101 -39.50161 -37.84596 -36.78544 -35.35714 -32.61226 -31.88582 -30.57589 -30.18514 -29.49542 -27.78615 -27.58317 -24.80927 -24.15333 -23.55581 -22.57736 -21.24107 -20.11990 -19.40466 -18.43867 -17.15032 -16.73479 -16.60653 -16.12179 -16.03656 -15.36123 -15.13028 -14.87286 -14.73036 -14.15538 -14.00205 -13.82936 -13.64350 -13.60479 -13.22929 -12.83926 -12.62010 -12.52905 -12.35159 -12.13925 -12.05169 -12.03106 -11.67321 -11.47137 -11.38732 -11.00020 -10.90872 -10.86177 -10.54763 -10.53226 -10.08914 -9.52486 -9.34933 -9.21470 -9.02327 -8.90993 -8.53578 -8.46626 -7.29757 -6.03133 -4.01620 0.94056 1.09047 2.93354 3.00596 3.21269 3.27600 3.35962 3.39434 3.42879 4.30777 4.41513 4.45299 4.62627 4.73033 4.79535 4.86866 4.93871 5.02965 5.12141 5.14867 5.21759 5.27491 5.29443 5.35527 5.56673 5.66742 5.70453 5.73474 5.81173 5.96608 6.10493 6.16446 6.18474 6.20200 6.33228 6.39774 6.42951 6.47607 6.60083 6.69489 6.81071 7.03511 7.07251 7.29138 7.55933 7.65134 7.97786 8.10428 8.57696 8.69097 9.05698 9.57979 11.09729 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002615 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.985991 B =10703.526315 C =11269.066968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.079 4.079 8 C -0.117 4.117 9 C 0.193 3.807 10 H 0.102 0.898 11 C -0.153 4.153 12 N -0.738 5.738 13 C 0.516 3.484 14 O -0.513 6.513 15 C 0.029 3.971 16 N -0.508 5.508 17 C 0.034 3.966 18 C 0.182 3.818 19 H -0.002 1.002 20 C -0.148 4.148 21 C -0.503 4.503 22 H 0.085 0.915 23 C 0.069 3.931 24 N -0.899 5.899 25 Si 0.886 3.114 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.269 1.269 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.006 0.994 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.028 0.972 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.904 17.654 11.460 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.091 3.909 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.097 4.097 8 C -0.119 4.119 9 C 0.088 3.912 10 H 0.120 0.880 11 C -0.212 4.212 12 N -0.394 5.394 13 C 0.303 3.697 14 O -0.386 6.386 15 C -0.103 4.103 16 N -0.233 5.233 17 C -0.114 4.114 18 C 0.075 3.925 19 H 0.016 0.984 20 C -0.205 4.205 21 C -0.542 4.542 22 H 0.103 0.897 23 C -0.132 4.132 24 N -0.537 5.537 25 Si 0.717 3.283 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.195 1.195 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.011 16.131 11.690 29.687 hybrid contribution 0.692 2.132 -0.538 2.305 sum -21.319 18.262 11.152 30.206 Atomic orbital electron populations 1.23084 0.78286 1.04225 1.01208 1.86134 1.21386 1.26481 1.88327 1.18747 0.91412 0.84516 0.96261 1.21222 1.00041 0.92283 1.08900 1.20946 0.94716 0.96956 0.97559 1.21040 0.93919 0.98355 1.03746 1.20766 0.99875 0.91076 0.97994 1.19367 0.90765 0.95693 1.06038 1.19490 0.83053 0.93929 0.94743 0.88036 1.22110 1.02241 1.01865 0.94965 1.46266 1.21096 1.12796 1.59194 1.20900 0.86665 0.84494 0.77647 1.90666 1.68295 1.22181 1.57484 1.22067 0.93596 0.94741 0.99913 1.61691 1.03270 1.26005 1.32326 1.22379 0.97143 1.01074 0.90827 1.19747 0.83670 0.97357 0.91766 0.98431 1.22247 0.98976 0.99071 1.00219 1.20984 0.98145 0.96943 1.38089 0.89700 1.24927 0.97766 0.95612 0.94922 1.69880 1.17367 1.25328 1.41166 0.86881 0.80807 0.83941 0.76670 1.20521 1.22514 1.19477 0.88006 0.92660 0.92646 0.85354 0.85782 0.85682 0.85413 0.92627 0.91729 0.91373 0.77027 0.88068 0.93130 0.89980 0.91683 0.97547 0.91823 0.93885 0.95355 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.17 9.60 -19.43 -0.19 -3.36 16 3 C 0.14 1.39 6.66 -39.22 -0.26 1.13 16 4 C -0.21 -1.68 9.04 -39.43 -0.36 -2.03 16 5 C -0.08 -0.62 10.04 -39.61 -0.40 -1.01 16 6 C -0.15 -1.16 10.04 -39.56 -0.40 -1.56 16 7 C -0.08 -0.69 9.23 -39.61 -0.37 -1.05 16 8 C -0.12 -1.24 5.06 -104.47 -0.53 -1.76 16 9 C 0.19 2.36 2.56 -69.08 -0.18 2.18 16 10 H 0.10 1.51 6.99 -51.93 -0.36 1.15 16 11 C -0.15 -1.76 9.49 37.16 0.35 -1.41 16 12 N -0.74 -9.17 4.98 -54.93 -0.27 -9.44 16 13 C 0.52 8.57 7.51 -10.99 -0.08 8.49 16 14 O -0.51 -10.51 13.95 5.56 0.08 -10.43 16 15 C 0.03 0.49 5.26 -4.98 -0.03 0.46 16 16 N -0.51 -11.21 4.36 -237.73 -1.04 -12.25 16 17 C 0.03 0.73 8.89 60.06 0.53 1.27 16 18 C 0.18 4.39 1.65 -68.86 -0.11 4.28 16 19 H 0.00 -0.04 7.20 -51.93 -0.37 -0.42 16 20 C -0.15 -3.24 8.47 37.16 0.31 -2.92 16 21 C -0.50 -14.39 8.51 -34.44 -0.29 -14.68 16 22 H 0.09 2.66 6.64 -52.49 -0.35 2.32 16 23 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 24 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 25 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 26 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 27 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 33 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.88 6.16 -52.49 -0.32 0.56 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.39 3.74 6.31 -40.82 -0.26 3.48 16 40 H 0.10 1.57 5.83 -51.93 -0.30 1.27 16 41 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.08 1.95 6.24 -51.93 -0.32 1.63 16 43 H 0.06 1.37 5.82 -51.93 -0.30 1.06 16 44 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 47 H 0.03 0.51 6.20 -51.93 -0.32 0.19 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -34.59 373.07 -7.27 -41.86 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.20 Total: 2.73 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.90 Total: -5.56 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.54 Total: -48.67 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.59 -7.27 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268336064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.021 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds