Wall clock time and date at job start Tue Mar 31 2020 13:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47312 * 2 1 4 4 C 1.46502 * 119.99404 * 270.00041 * 3 2 1 5 5 C 1.50702 * 109.47005 * 269.99397 * 4 3 2 6 6 H 1.07996 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99516 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99507 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00550 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47156 * 89.99494 * 9 7 5 11 11 H 1.48501 * 109.47049 * 210.00214 * 9 7 5 12 12 H 1.48501 * 109.46910 * 329.99917 * 9 7 5 13 13 C 1.34770 * 120.00290 * 89.99931 * 3 2 1 14 14 O 1.21278 * 120.00247 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99725 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46754 * 180.02562 * 15 13 3 17 17 C 1.46906 * 110.99831 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.46929 * 34.99769 * 17 16 15 19 19 C 1.53000 * 109.47135 * 274.99806 * 17 16 15 20 20 C 1.50694 * 109.47168 * 154.99729 * 17 16 15 21 21 C 1.38295 * 119.97322 * 40.00074 * 20 17 16 22 22 C 1.38243 * 120.11401 * 179.70128 * 21 20 17 23 23 C 1.38169 * 120.05492 * 0.02562 * 22 21 20 24 24 C 1.38712 * 119.94061 * 0.02562 * 23 22 21 25 25 O 1.35906 * 120.04954 * 180.02562 * 24 23 22 26 26 C 1.42897 * 117.00451 * 359.97438 * 25 24 23 27 27 C 1.38122 * 119.97595 * 219.72545 * 20 17 16 28 28 H 1.09006 * 109.46945 * 300.00393 * 1 2 3 29 29 H 1.08993 * 109.47020 * 60.00039 * 1 2 3 30 30 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47092 * 240.00088 * 2 1 3 32 32 H 1.09002 * 109.47187 * 119.99770 * 2 1 3 33 33 H 1.08999 * 109.47487 * 29.99933 * 4 3 2 34 34 H 1.09003 * 109.46873 * 149.99938 * 4 3 2 35 35 H 0.97004 * 119.99938 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47162 * 60.00215 * 15 13 3 37 37 H 1.08998 * 109.47081 * 299.99573 * 15 13 3 38 38 H 1.00900 * 111.00450 * 56.04716 * 16 15 13 39 39 H 1.08998 * 109.47182 * 299.99808 * 19 17 16 40 40 H 1.09000 * 109.46982 * 60.00254 * 19 17 16 41 41 H 1.08997 * 109.47297 * 179.97438 * 19 17 16 42 42 H 1.07997 * 119.93892 * 359.72353 * 21 20 17 43 43 H 1.07998 * 119.97188 * 180.02562 * 22 21 20 44 44 H 1.08000 * 120.02729 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.46997 * 300.00067 * 26 25 24 46 46 H 1.09006 * 109.46723 * 59.99950 * 26 25 24 47 47 H 1.08993 * 109.47390 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.02294 * 0.25466 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3903 -2.8776 8 7 5.3914 2.1833 -3.2574 9 14 3.0135 3.4368 -3.9282 10 1 3.1172 4.8567 -3.5061 11 1 3.4066 3.3145 -5.3550 12 1 1.6137 2.9710 -3.7588 13 6 2.2431 2.0166 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9924 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 2.0764 1.5461 4.8802 18 1 2.3282 0.4888 4.7984 19 6 0.6036 1.6912 5.2682 20 6 2.9395 2.1878 5.9357 21 6 3.1129 3.5598 5.9462 22 6 3.8991 4.1521 6.9169 23 6 4.5141 3.3742 7.8790 24 6 4.3426 1.9978 7.8700 25 8 4.9461 1.2306 8.8156 26 6 5.7436 1.9080 9.7888 27 6 3.5522 1.4058 6.8954 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 5.7174 2.5737 -4.0834 36 1 2.6229 0.4188 2.5298 37 1 0.9445 1.0115 2.5302 38 1 1.7843 3.0649 3.5217 39 1 0.3518 2.7486 5.3499 40 1 -0.0207 1.2270 4.5047 41 1 0.4302 1.2010 6.2261 42 1 2.6330 4.1695 5.1950 43 1 4.0326 5.2238 6.9232 44 1 5.1278 3.8375 8.6374 45 1 6.5499 2.4441 9.2882 46 1 5.1229 2.6158 10.3382 47 1 6.1659 1.1809 10.4823 48 1 3.4162 0.3345 6.8870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271735844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:04 Heat of formation + Delta-G solvation = -65.584461 kcal Electronic energy + Delta-G solvation = -26732.442582 eV Core-core repulsion = 22979.941516 eV Total energy + Delta-G solvation = -3752.501065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16956 -40.73288 -39.05511 -37.17853 -36.72397 -34.85168 -32.91014 -31.85304 -31.39223 -30.06568 -29.51821 -28.09858 -27.08279 -24.52524 -24.22492 -23.70796 -23.29432 -21.40010 -19.96332 -19.11601 -18.79147 -17.80967 -17.51243 -17.14722 -16.81477 -16.64249 -16.60417 -16.06196 -15.85561 -15.44381 -15.07124 -14.70506 -14.65156 -14.41121 -14.40322 -14.25382 -13.87403 -13.76203 -13.53011 -13.30959 -13.25307 -13.18561 -12.87076 -12.82682 -12.53871 -12.37680 -12.25211 -12.20840 -12.02363 -11.87927 -11.87062 -11.73486 -11.60984 -10.82767 -10.59855 -9.79339 -9.42825 -9.28676 -9.10335 -8.33395 -6.38192 0.38709 0.54424 1.31882 1.36559 1.44757 1.84238 2.23197 2.31196 2.40420 2.81637 3.00905 3.28541 3.71199 3.79003 3.91480 4.10157 4.15564 4.19273 4.23441 4.31531 4.37108 4.39991 4.45152 4.46763 4.49477 4.59977 4.65354 4.66302 4.74051 4.80394 4.88914 4.91064 4.95187 5.02457 5.03597 5.10032 5.24340 5.36124 5.40483 5.48200 5.54419 5.60184 5.68870 5.85287 6.03636 6.26251 6.34859 6.48851 6.63487 6.77237 7.22775 7.48505 8.83911 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.002627 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.916348 B =10657.916503 C =11426.104778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.059 3.941 16 N -0.684 5.684 17 C 0.126 3.874 18 H 0.099 0.901 19 C -0.171 4.171 20 C -0.034 4.034 21 C -0.149 4.149 22 C -0.089 4.089 23 C -0.216 4.216 24 C 0.112 3.888 25 O -0.337 6.337 26 C 0.019 3.981 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.348 0.652 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 -3.993 24.632 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.284 3.716 14 O -0.463 6.463 15 C -0.073 4.073 16 N -0.317 5.317 17 C 0.017 3.983 18 H 0.117 0.883 19 C -0.229 4.229 20 C -0.035 4.035 21 C -0.167 4.167 22 C -0.107 4.107 23 C -0.235 4.235 24 C 0.067 3.933 25 O -0.251 6.251 26 C -0.075 4.075 27 C -0.180 4.180 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.168 0.832 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.257 -3.743 24.495 26.818 hybrid contribution -0.280 0.895 -0.803 1.235 sum -10.537 -2.848 23.691 26.085 Atomic orbital electron populations 1.22150 0.93834 1.03629 1.02095 1.21777 0.95679 0.81134 1.03898 1.48061 1.64370 1.15213 1.05744 1.19256 0.94602 0.92983 0.82733 1.21582 0.97175 1.31913 1.06590 0.95586 1.25890 0.96754 0.97269 0.99036 1.70064 1.17502 1.46690 1.24495 0.85688 0.80450 0.78921 0.77711 1.20274 1.19982 1.16022 1.21281 0.77056 0.86722 0.86515 1.90636 1.47080 1.20744 1.87879 1.21826 1.02473 0.96028 0.86933 1.60117 1.63869 1.07180 1.00511 1.20498 0.93644 0.98207 0.85945 0.88298 1.22423 0.94640 1.02759 1.03125 1.19657 0.96102 0.93498 0.94245 1.21008 1.01570 0.94800 0.99370 1.21201 0.95287 1.00708 0.93508 1.21440 1.06120 0.92542 1.03385 1.19124 0.93926 0.90213 0.90059 1.86029 1.62691 1.36721 1.39642 1.23311 0.94119 0.99713 0.90358 1.20373 1.00982 1.00790 0.95893 0.91852 0.93585 0.88774 0.91178 0.88609 0.93416 0.96528 0.92318 0.87276 0.88949 0.83208 0.92362 0.90948 0.90617 0.86221 0.84241 0.83673 0.92238 0.91592 0.86334 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 71.98 0.74 -2.56 16 2 C 0.10 2.77 5.93 86.38 0.51 3.28 16 3 N -0.60 -24.19 2.46 -826.13 -2.03 -26.22 16 4 C 0.23 11.17 4.23 85.63 0.36 11.53 16 5 C -0.53 -32.10 9.94 25.60 0.25 -31.84 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.49 5.47 84.65 0.46 0.95 16 8 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 9 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 13 C 0.50 19.91 7.71 87.66 0.68 20.58 16 14 O -0.58 -29.58 15.78 -3.02 -0.05 -29.63 16 15 C 0.06 1.58 4.52 85.56 0.39 1.97 16 16 N -0.68 -18.63 5.33 -499.46 -2.66 -21.29 16 17 C 0.13 2.58 2.79 44.17 0.12 2.70 16 18 H 0.10 1.81 7.66 -2.39 -0.02 1.79 16 19 C -0.17 -2.62 9.14 71.98 0.66 -1.96 16 20 C -0.03 -0.80 4.95 -19.88 -0.10 -0.90 16 21 C -0.15 -3.62 9.32 22.28 0.21 -3.41 16 22 C -0.09 -1.93 10.04 22.25 0.22 -1.71 16 23 C -0.22 -4.42 9.04 22.37 0.20 -4.22 16 24 C 0.11 2.54 6.69 22.50 0.15 2.69 16 25 O -0.34 -6.98 10.50 -92.49 -0.97 -7.95 16 26 C 0.02 0.23 9.81 113.37 1.11 1.34 16 27 C -0.16 -3.70 9.61 22.36 0.21 -3.49 16 28 H 0.06 1.16 7.22 -2.38 -0.02 1.15 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 33 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 34 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 35 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 36 H 0.11 2.70 7.32 -2.39 -0.02 2.68 16 37 H 0.09 1.78 6.48 -2.39 -0.02 1.77 16 38 H 0.35 9.74 7.51 -89.69 -0.67 9.07 16 39 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 40 H 0.07 0.94 7.45 -2.39 -0.02 0.92 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.12 2.95 7.24 -2.91 -0.02 2.93 16 43 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.19 6.30 -2.91 -0.02 2.17 16 45 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 46 H 0.07 0.62 7.66 -2.38 -0.02 0.61 16 47 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.14 2.73 8.04 -2.91 -0.02 2.71 16 Total: -1.00 -82.19 389.82 2.88 -79.31 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.22 Total: 24.56 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 6.18 Total: -5.04 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.39 Total: -108.38 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.02 Total: -37.58 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -82.19 2.88 -79.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271735844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.723 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds