Wall clock time and date at job start Tue Mar 31 2020 13:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47227 * 2 1 4 4 C 1.34773 * 120.00062 * 83.79540 * 3 2 1 5 5 O 1.21589 * 120.00159 * 180.02562 * 4 3 2 6 6 N 1.34781 * 119.99854 * 0.02562 * 4 3 2 7 7 C 1.46497 * 119.99780 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46992 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47152 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00200 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00037 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00164 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47448 * 89.99815 * 13 11 9 15 15 H 1.48504 * 109.46673 * 210.00017 * 13 11 9 16 16 H 1.48499 * 109.46969 * 329.99531 * 13 11 9 17 17 C 1.46505 * 119.99679 * 263.79663 * 3 2 1 18 18 H 1.09006 * 109.46535 * 174.23910 * 17 3 2 19 19 C 1.52997 * 109.47154 * 54.24499 * 17 3 2 20 20 C 1.50694 * 109.47125 * 294.24056 * 17 3 2 21 21 C 1.38290 * 119.97519 * 328.97800 * 20 17 3 22 22 C 1.38246 * 120.10959 * 179.72828 * 21 20 17 23 23 C 1.38160 * 120.05624 * 0.54705 * 22 21 20 24 24 C 1.38714 * 119.94508 * 359.72803 * 23 22 21 25 25 O 1.35902 * 120.05456 * 179.97438 * 24 23 22 26 26 C 1.42900 * 116.99804 * 0.02562 * 25 24 23 27 27 C 1.38124 * 119.97098 * 149.25595 * 20 17 3 28 28 H 1.09004 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47374 * 299.99874 * 1 2 3 30 30 H 1.08996 * 109.47284 * 60.00432 * 1 2 3 31 31 H 1.09000 * 109.47374 * 240.00126 * 2 1 3 32 32 H 1.09000 * 109.47523 * 120.00281 * 2 1 3 33 33 H 0.97000 * 120.00074 * 359.72274 * 6 4 3 34 34 H 1.08999 * 109.47265 * 299.99391 * 7 6 4 35 35 H 1.09003 * 109.47519 * 60.00280 * 7 6 4 36 36 H 1.08999 * 109.47130 * 299.99679 * 8 7 6 37 37 H 1.08997 * 109.47455 * 59.99816 * 8 7 6 38 38 H 0.97000 * 120.00410 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47164 * 299.99579 * 19 17 3 40 40 H 1.09000 * 109.47150 * 59.99421 * 19 17 3 41 41 H 1.09001 * 109.47225 * 179.97438 * 19 17 3 42 42 H 1.08003 * 119.93937 * 359.97438 * 21 20 17 43 43 H 1.08004 * 119.96538 * 180.25068 * 22 21 20 44 44 H 1.07997 * 120.03000 * 179.70948 * 23 22 21 45 45 H 1.08994 * 109.46994 * 60.00924 * 26 25 24 46 46 H 1.09002 * 109.46705 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47391 * 300.00060 * 26 25 24 48 48 H 1.08007 * 120.02554 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1240 2.0586 1.1603 5 8 2.5289 3.2051 1.1603 6 7 1.7809 1.4651 2.3208 7 6 1.8953 2.2016 3.5820 8 6 1.4467 1.3057 4.7382 9 6 1.5637 2.0635 6.0355 10 1 1.9226 3.0821 6.0355 11 6 1.2137 1.4561 7.2228 12 7 0.7771 0.2155 7.2231 13 14 1.3581 2.3957 8.8308 14 1 0.0831 3.1057 9.1056 15 1 1.6434 1.4451 9.9356 16 1 2.4627 3.3830 8.7297 17 6 2.3917 2.0261 -1.2614 18 1 2.6308 3.0735 -1.0770 19 6 1.2241 1.9351 -2.2459 20 6 3.5953 1.3311 -1.8438 21 6 4.5309 0.7515 -1.0064 22 6 5.6332 0.1083 -1.5379 23 6 5.8085 0.0529 -2.9072 24 6 4.8744 0.6383 -3.7491 25 8 5.0449 0.5856 -5.0964 26 6 6.2090 -0.0896 -5.5770 27 6 3.7661 1.2784 -3.2134 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.4541 0.5518 2.3204 34 1 2.9323 2.5003 3.7356 35 1 1.2634 3.0890 3.5432 36 1 0.4098 1.0066 4.5849 37 1 2.0788 0.4186 4.7769 38 1 0.5312 -0.2120 8.0583 39 1 0.9851 0.8878 -2.4302 40 1 0.3536 2.4378 -1.8245 41 1 1.5018 2.4153 -3.1842 42 1 4.3981 0.7981 0.0644 43 1 6.3604 -0.3470 -0.8819 44 1 6.6722 -0.4456 -3.3218 45 1 6.1910 -1.1271 -5.2433 46 1 6.2234 -0.0583 -6.6665 47 1 7.1008 0.4019 -5.1880 48 1 3.0376 1.7354 -3.8669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273330080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:27 Heat of formation + Delta-G solvation = -45.059947 kcal Electronic energy + Delta-G solvation = -27108.857148 eV Core-core repulsion = 23357.246093 eV Total energy + Delta-G solvation = -3751.611056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70510 -39.86130 -37.96083 -36.08480 -34.89400 -33.30633 -32.45040 -30.80204 -30.06512 -29.48972 -28.93463 -27.43664 -24.93646 -23.90645 -23.29788 -22.34141 -21.33657 -20.71368 -19.41573 -18.06162 -17.83939 -16.58670 -16.37711 -16.26312 -16.01526 -15.76286 -15.35846 -14.57095 -14.38577 -14.25754 -14.07366 -13.91011 -13.85147 -13.54567 -13.17517 -12.95261 -12.69029 -12.56863 -12.34193 -12.29690 -12.17962 -11.93921 -11.64088 -11.42026 -11.19261 -11.09426 -11.03460 -11.01229 -10.88445 -10.61443 -10.29978 -9.86108 -9.52903 -9.24656 -8.98924 -8.74323 -8.45677 -8.35486 -8.18714 -6.07795 -4.10184 1.11680 1.30745 2.83090 3.04848 3.30674 3.36752 3.41357 3.57405 3.62192 4.27959 4.45211 4.53784 4.58218 4.79675 4.80726 4.85096 4.90928 4.98537 5.10610 5.15939 5.22409 5.28025 5.29323 5.33163 5.36788 5.44341 5.49112 5.74170 5.75887 5.82807 5.86075 6.00869 6.11454 6.19927 6.26899 6.33155 6.42451 6.44271 6.55711 6.73670 6.80074 7.03627 7.16699 7.21509 7.57845 7.65146 7.91502 8.26864 8.40377 8.94388 9.01453 9.54423 11.03832 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.002427 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.794877 B =11536.350551 C =11954.792953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 N -0.625 5.625 4 C 0.702 3.298 5 O -0.596 6.596 6 N -0.737 5.737 7 C 0.139 3.861 8 C 0.014 3.986 9 C -0.520 4.520 10 H 0.059 0.941 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.194 3.806 18 H 0.116 0.884 19 C -0.160 4.160 20 C -0.053 4.053 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.212 4.212 24 C 0.123 3.877 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -4.556 -25.627 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 N -0.363 5.363 4 C 0.403 3.597 5 O -0.475 6.475 6 N -0.391 5.391 7 C 0.016 3.984 8 C -0.024 4.024 9 C -0.558 4.558 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C 0.089 3.911 18 H 0.134 0.866 19 C -0.218 4.218 20 C -0.055 4.055 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.230 4.230 24 C 0.078 3.922 25 O -0.233 6.233 26 C -0.067 4.067 27 C -0.166 4.166 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.268 -3.764 -25.600 26.623 hybrid contribution 0.199 -0.355 1.020 1.098 sum 6.467 -4.119 -24.579 25.747 Atomic orbital electron populations 1.22358 0.95836 1.02335 1.03120 1.21412 0.94451 0.82807 1.02938 1.47173 1.69874 1.14034 1.05213 1.16007 0.78775 0.84491 0.80422 1.90879 1.53847 1.16857 1.85869 1.45679 1.69627 1.17702 1.06087 1.21595 1.00605 0.95460 0.80750 1.19311 0.96926 0.94961 0.91171 1.21052 1.44165 0.99550 0.91065 0.92230 1.24996 0.95050 0.94946 0.99334 1.69954 1.44284 1.12010 1.27094 0.86516 0.78553 0.79632 0.82874 1.20579 1.21209 1.19729 1.19661 0.90836 0.98009 0.82551 0.86607 1.22272 0.98062 1.02671 0.98783 1.20086 0.96280 0.96811 0.92291 1.20973 0.94360 0.99605 1.00333 1.20952 0.97171 0.97458 0.94207 1.21208 1.00938 1.06404 0.94478 1.18950 0.94803 0.96294 0.82180 1.86054 1.44434 1.73547 1.19283 1.23029 0.86781 0.96477 1.00392 1.20281 0.97959 1.03986 0.94352 0.91607 0.91872 0.91942 0.90231 0.90827 0.77175 0.92802 0.92799 0.96036 0.96045 0.92892 0.91818 0.91586 0.91182 0.85795 0.85806 0.85759 0.92717 0.88350 0.92712 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.90 37.15 0.37 -1.41 16 2 C 0.11 1.15 4.63 -4.04 -0.02 1.13 16 3 N -0.63 -8.34 1.42 -173.13 -0.25 -8.58 16 4 C 0.70 12.42 8.05 -86.92 -0.70 11.72 16 5 O -0.60 -12.81 15.68 5.29 0.08 -12.73 16 6 N -0.74 -13.26 5.41 -65.23 -0.35 -13.61 16 7 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 8 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 9 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.19 2.35 3.03 -69.08 -0.21 2.14 16 18 H 0.12 1.66 6.92 -51.93 -0.36 1.30 16 19 C -0.16 -1.49 7.33 37.16 0.27 -1.22 16 20 C -0.05 -0.62 4.88 -104.65 -0.51 -1.13 16 21 C -0.13 -1.64 9.04 -39.56 -0.36 -2.00 16 22 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 23 C -0.21 -2.08 9.04 -39.43 -0.36 -2.44 16 24 C 0.12 1.30 6.69 -39.22 -0.26 1.04 16 25 O -0.32 -3.13 10.50 -19.43 -0.20 -3.33 16 26 C 0.03 0.17 9.81 101.05 0.99 1.16 16 27 C -0.15 -1.57 9.08 -39.43 -0.36 -1.93 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.75 7.86 -51.93 -0.41 0.35 16 30 H 0.06 0.59 6.14 -51.93 -0.32 0.27 16 31 H 0.08 0.76 7.27 -51.93 -0.38 0.38 16 32 H 0.07 0.79 6.71 -51.93 -0.35 0.45 16 33 H 0.39 6.28 6.00 -40.82 -0.24 6.04 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.06 0.54 6.64 -51.93 -0.34 0.20 16 40 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 41 H 0.07 0.55 6.51 -51.93 -0.34 0.21 16 42 H 0.12 1.70 7.27 -52.48 -0.38 1.32 16 43 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.12 0.94 6.30 -52.49 -0.33 0.61 16 45 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 46 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 48 H 0.13 1.24 6.14 -52.48 -0.32 0.92 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -32.68 383.92 -8.82 -41.49 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.48 Total: 4.15 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.11 Total: -4.23 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.14 Total: -47.58 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.12 Total: -16.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.68 -8.82 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273330080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.568 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds