Wall clock time and date at job start Tue Mar 31 2020 13:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47139 * 2 1 4 4 C 1.34779 * 119.99660 * 276.78012 * 3 2 1 5 5 O 1.21593 * 119.99584 * 180.02562 * 4 3 2 6 6 N 1.34765 * 120.00328 * 359.97438 * 4 3 2 7 7 C 1.46506 * 120.00107 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47019 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00080 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99802 * 179.97438 * 9 8 7 12 12 N 1.31505 * 120.00057 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99837 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47095 * 89.99922 * 13 11 9 15 15 H 1.48500 * 109.46914 * 209.99328 * 13 11 9 16 16 H 1.48499 * 109.47421 * 329.99503 * 13 11 9 17 17 C 1.46494 * 120.00050 * 96.78397 * 3 2 1 18 18 H 1.09001 * 109.47429 * 199.60075 * 17 3 2 19 19 C 1.52999 * 109.46851 * 319.59724 * 17 3 2 20 20 C 1.50700 * 109.47676 * 79.59689 * 17 3 2 21 21 C 1.38291 * 119.96732 * 317.62286 * 20 17 3 22 22 C 1.38247 * 120.10977 * 179.97438 * 21 20 17 23 23 C 1.38164 * 120.05442 * 0.02562 * 22 21 20 24 24 C 1.38714 * 119.94343 * 0.02562 * 23 22 21 25 25 O 1.35906 * 120.05345 * 180.02562 * 24 23 22 26 26 C 1.42894 * 117.00048 * 0.02562 * 25 24 23 27 27 C 1.38121 * 119.97348 * 137.33992 * 20 17 3 28 28 H 1.09002 * 109.46929 * 299.99911 * 1 2 3 29 29 H 1.09004 * 109.47391 * 59.99992 * 1 2 3 30 30 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47598 * 120.00085 * 2 1 3 32 32 H 1.09005 * 109.47435 * 240.00068 * 2 1 3 33 33 H 0.97006 * 120.00307 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.46884 * 300.00105 * 7 6 4 35 35 H 1.08998 * 109.47078 * 59.99939 * 7 6 4 36 36 H 1.09005 * 109.46832 * 300.00247 * 8 7 6 37 37 H 1.08998 * 109.47241 * 59.99889 * 8 7 6 38 38 H 0.97003 * 120.00407 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47185 * 299.99678 * 19 17 3 40 40 H 1.08997 * 109.47366 * 60.00460 * 19 17 3 41 41 H 1.09007 * 109.47549 * 180.02562 * 19 17 3 42 42 H 1.07998 * 119.94891 * 359.97187 * 21 20 17 43 43 H 1.07997 * 119.97190 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.02941 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47140 * 299.99513 * 26 25 24 46 46 H 1.08999 * 109.47556 * 59.99285 * 26 25 24 47 47 H 1.08999 * 109.47557 * 179.97438 * 26 25 24 48 48 H 1.07993 * 120.02606 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1130 2.0625 -1.1591 5 8 2.5187 3.2087 -1.1591 6 7 1.7590 1.4729 -2.3181 7 6 1.8614 2.2137 -3.5780 8 6 1.4006 1.3220 -4.7328 9 6 1.5054 2.0842 -6.0286 10 1 1.8651 3.1026 -6.0286 11 6 1.1431 1.4811 -7.2144 12 7 1.2340 2.1463 -8.3451 13 14 0.5217 -0.2805 -7.2144 14 1 -0.9541 -0.2849 -7.0491 15 1 0.8774 -0.9308 -8.5012 16 1 1.1477 -1.0264 -6.0932 17 6 2.4038 2.0219 1.2598 18 1 2.4022 3.1044 1.1323 19 6 1.4067 1.6358 2.3542 20 6 3.7845 1.5646 1.6542 21 6 4.1356 0.2336 1.5212 22 6 5.4015 -0.1891 1.8816 23 6 6.3191 0.7177 2.3763 24 6 5.9689 2.0531 2.5116 25 8 6.8699 2.9471 2.9975 26 6 8.1598 2.4425 3.3487 27 6 4.7000 2.4761 2.1427 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.4356 0.5584 -2.3181 34 1 1.2299 3.1009 -3.5301 35 1 2.8968 2.5130 -3.7403 36 1 2.0317 0.4345 -4.7807 37 1 0.3651 1.0231 -4.5702 38 1 0.9795 1.7219 -9.1794 39 1 0.4080 1.9667 2.0690 40 1 1.4082 0.5534 2.4817 41 1 1.6931 2.1128 3.2915 42 1 3.4196 -0.4769 1.1352 43 1 5.6735 -1.2289 1.7764 44 1 7.3082 0.3872 2.6573 45 1 8.0543 1.6829 4.1232 46 1 8.6294 2.0018 2.4693 47 1 8.7800 3.2578 3.7212 48 1 4.4266 3.5161 2.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273330083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:30 Heat of formation + Delta-G solvation = -37.465976 kcal Electronic energy + Delta-G solvation = -27225.112531 eV Core-core repulsion = 23473.830775 eV Total energy + Delta-G solvation = -3751.281756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72214 -39.88302 -37.99480 -36.17454 -34.99631 -33.23304 -32.39355 -30.80436 -30.38495 -29.67682 -29.13833 -27.53782 -24.96662 -24.05758 -23.34342 -22.41719 -21.25553 -20.70373 -19.53425 -18.04338 -17.71182 -16.95411 -16.55662 -16.40441 -15.96873 -15.67897 -15.52507 -14.69426 -14.38022 -14.11486 -14.05475 -13.91630 -13.73841 -13.61790 -13.33494 -13.15291 -12.78883 -12.66772 -12.58810 -12.46047 -12.37651 -11.91558 -11.74677 -11.46129 -11.35803 -11.19444 -11.17575 -10.98000 -10.89963 -10.35530 -10.20072 -9.94543 -9.67448 -9.29538 -9.01271 -8.79544 -8.60143 -8.37970 -8.27705 -6.08640 -4.08339 1.12059 1.29617 2.79072 3.06685 3.26309 3.33750 3.35236 3.52872 3.61703 4.25952 4.39545 4.50272 4.57852 4.66588 4.80623 4.85425 4.86151 4.88607 4.99380 5.09573 5.14416 5.16545 5.24268 5.28906 5.33747 5.36488 5.50351 5.64247 5.64862 5.72600 5.86259 5.87701 6.06717 6.11221 6.13684 6.25909 6.29288 6.39372 6.56059 6.60656 6.62916 6.87355 7.06897 7.19517 7.27670 7.30145 7.70278 8.27643 8.48320 8.94043 8.97311 9.51569 11.04500 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002821 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.157362 B = 9921.609902 C =10607.485884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 N -0.626 5.626 4 C 0.704 3.296 5 O -0.590 6.590 6 N -0.740 5.740 7 C 0.147 3.853 8 C -0.021 4.021 9 C -0.521 4.521 10 H 0.076 0.924 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.266 1.266 17 C 0.196 3.804 18 H 0.108 0.892 19 C -0.155 4.155 20 C -0.050 4.050 21 C -0.152 4.152 22 C -0.081 4.081 23 C -0.211 4.211 24 C 0.126 3.874 25 O -0.318 6.318 26 C 0.028 3.972 27 C -0.137 4.137 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.391 0.609 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.099 0.901 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -7.810 27.718 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 N -0.363 5.363 4 C 0.405 3.595 5 O -0.468 6.468 6 N -0.395 5.395 7 C 0.025 3.975 8 C -0.059 4.059 9 C -0.559 4.559 10 H 0.094 0.906 11 C -0.133 4.133 12 N -0.537 5.537 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.191 1.191 17 C 0.092 3.908 18 H 0.126 0.874 19 C -0.213 4.213 20 C -0.052 4.052 21 C -0.170 4.170 22 C -0.099 4.099 23 C -0.230 4.230 24 C 0.081 3.919 25 O -0.231 6.231 26 C -0.067 4.067 27 C -0.156 4.156 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.225 0.775 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.338 -6.743 27.493 29.009 hybrid contribution -0.188 -1.706 -0.244 1.733 sum 6.150 -8.448 27.249 29.184 Atomic orbital electron populations 1.22376 0.95737 1.02354 1.03276 1.21652 0.94614 0.83301 1.02947 1.47189 1.69778 1.13810 1.05546 1.15947 0.78695 0.84509 0.80317 1.90897 1.53338 1.16859 1.85720 1.45649 1.70017 1.17446 1.06398 1.21373 1.01233 0.94990 0.79945 1.19786 0.96091 0.96031 0.93945 1.20923 1.44568 1.01269 0.89139 0.90584 1.24998 0.95037 0.97858 0.95421 1.69902 1.48346 1.37284 0.98207 0.86752 0.79428 0.85341 0.77550 1.20250 1.21317 1.19104 1.19691 0.89250 0.99159 0.82741 0.87440 1.22187 0.99021 1.02209 0.97853 1.20079 0.95743 0.93240 0.96114 1.21160 0.97190 0.95744 1.02937 1.20904 0.93136 0.99122 0.96786 1.21202 1.01146 0.92768 1.07914 1.18971 0.89797 0.88334 0.94783 1.86078 1.22940 1.35672 1.78449 1.23036 0.82555 1.01099 0.99998 1.20264 0.91011 1.00490 1.03828 0.91809 0.91855 0.91560 0.89539 0.90844 0.77456 0.92172 0.92206 0.96135 0.96536 0.92586 0.91346 0.91886 0.91138 0.85441 0.85904 0.85724 0.92779 0.92658 0.88283 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.96 37.16 0.37 -1.18 16 2 C 0.10 0.92 4.01 -4.04 -0.02 0.91 16 3 N -0.63 -8.06 2.22 -173.13 -0.38 -8.44 16 4 C 0.70 12.38 8.23 -86.93 -0.71 11.66 16 5 O -0.59 -12.79 15.78 5.28 0.08 -12.70 16 6 N -0.74 -12.90 5.36 -65.22 -0.35 -13.25 16 7 C 0.15 3.13 5.61 -4.04 -0.02 3.10 16 8 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 9 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 10 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 13 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 17 C 0.20 2.29 2.80 -69.09 -0.19 2.10 16 18 H 0.11 1.48 6.97 -51.93 -0.36 1.12 16 19 C -0.15 -1.29 7.95 37.16 0.30 -1.00 16 20 C -0.05 -0.59 4.95 -104.65 -0.52 -1.11 16 21 C -0.15 -1.62 9.15 -39.56 -0.36 -1.98 16 22 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 23 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 24 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 25 O -0.32 -3.55 10.50 -19.45 -0.20 -3.76 16 26 C 0.03 0.19 9.81 101.05 0.99 1.19 16 27 C -0.14 -1.70 9.61 -39.43 -0.38 -2.08 16 28 H 0.06 0.52 6.23 -51.93 -0.32 0.20 16 29 H 0.06 0.68 7.76 -51.93 -0.40 0.27 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.64 4.48 -51.93 -0.23 0.40 16 32 H 0.07 0.69 6.74 -51.93 -0.35 0.34 16 33 H 0.39 5.79 5.96 -40.82 -0.24 5.55 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 0.57 7.15 -51.93 -0.37 0.20 16 40 H 0.06 0.45 6.69 -51.93 -0.35 0.11 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.13 1.15 4.51 -52.49 -0.24 0.92 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.98 6.30 -52.48 -0.33 0.65 16 45 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 46 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.13 1.57 8.02 -52.49 -0.42 1.15 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -34.67 379.14 -8.45 -43.13 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.31 Total: 4.30 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.11 Total: -4.67 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.04 Total: -48.49 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.12 Total: -16.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.67 -8.45 -43.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273330083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.661 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds