Wall clock time and date at job start Tue Mar 31 2020 12:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47578 * 2 1 4 4 O 1.42909 * 109.46969 * 120.00011 * 2 1 3 5 5 C 1.53002 * 109.47094 * 239.99536 * 2 1 3 6 6 N 1.46897 * 109.47313 * 179.97438 * 5 2 1 7 7 C 1.46965 * 111.00142 * 293.80668 * 6 5 2 8 8 C 1.53055 * 109.36191 * 176.81139 * 7 6 5 9 9 N 1.46955 * 109.36508 * 58.40079 * 8 7 6 10 10 C 1.46897 * 110.99727 * 176.81183 * 9 8 7 11 11 C 1.50708 * 109.47165 * 293.79813 * 10 9 8 12 12 C 1.38305 * 119.92910 * 269.73282 * 11 10 9 13 13 C 1.38099 * 120.06836 * 179.72419 * 12 11 10 14 14 C 1.38882 * 119.92674 * 0.54500 * 13 12 11 15 15 O 1.35746 * 120.06450 * 179.74951 * 14 13 12 16 16 C 1.34834 * 117.00064 * 174.43978 * 15 14 13 17 17 H 1.08002 * 119.99835 * 5.05210 * 16 15 14 18 18 C 1.38645 * 120.00207 * 185.05726 * 16 15 14 19 19 N 1.31564 * 119.99983 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00231 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47176 * 90.00079 * 20 18 16 22 22 H 1.48498 * 109.47268 * 210.00177 * 20 18 16 23 23 H 1.48504 * 109.46980 * 330.00237 * 20 18 16 24 24 C 1.38875 * 119.86389 * 359.72509 * 14 13 12 25 25 C 1.38097 * 119.93046 * 0.02562 * 24 14 13 26 26 C 1.46957 * 110.87917 * 300.67714 * 9 8 7 27 27 C 1.46955 * 111.00264 * 170.00141 * 6 5 2 28 28 H 1.08992 * 109.47084 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47135 * 299.99752 * 1 2 3 31 31 H 0.96694 * 114.00103 * 299.99857 * 4 2 1 32 32 H 1.09002 * 109.46697 * 60.00551 * 5 2 1 33 33 H 1.09000 * 109.47525 * 300.00181 * 5 2 1 34 34 H 1.08997 * 109.48711 * 296.77527 * 7 6 5 35 35 H 1.08995 * 109.48826 * 56.84246 * 7 6 5 36 36 H 1.09000 * 109.48468 * 298.43003 * 8 7 6 37 37 H 1.09001 * 109.50193 * 178.37806 * 8 7 6 38 38 H 1.09006 * 109.47636 * 53.79534 * 10 9 8 39 39 H 1.09001 * 109.47045 * 173.79964 * 10 9 8 40 40 H 1.07999 * 119.96434 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.03234 * 180.26467 * 13 12 11 42 42 H 0.97006 * 119.99749 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.03344 * 179.97438 * 24 14 13 44 44 H 1.08003 * 119.96690 * 180.02562 * 25 24 14 45 45 H 1.09009 * 109.48749 * 299.35260 * 26 9 8 46 46 H 1.08995 * 109.48683 * 179.29739 * 26 9 8 47 47 H 1.08995 * 109.48969 * 303.15933 * 27 6 5 48 48 H 1.09003 * 109.48605 * 63.22295 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 7 3.5089 -0.7209 -1.2496 7 6 4.0351 0.6433 -1.3980 8 6 5.5630 0.6098 -1.3139 9 7 6.0897 -0.2721 -2.3649 10 6 7.5586 -0.2716 -2.3652 11 6 8.0605 1.0930 -2.7619 12 6 8.2955 1.3814 -4.0939 13 6 8.7499 2.6327 -4.4612 14 6 8.9818 3.5982 -3.4902 15 8 9.4334 4.8274 -3.8477 16 6 9.5277 5.7527 -2.8714 17 1 9.3281 5.4781 -1.8461 18 6 9.8807 7.0565 -3.1837 19 7 9.9722 7.9594 -2.2312 20 14 10.2265 7.5314 -4.9570 21 1 8.9675 7.9806 -5.6037 22 1 11.2205 8.6342 -4.9894 23 1 10.7665 6.3567 -5.6877 24 6 8.7502 3.3036 -2.1530 25 6 8.2909 2.0522 -1.7926 26 6 5.5635 -1.6361 -2.2164 27 6 4.0357 -1.6027 -2.3005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7210 -0.2702 1.9980 32 1 1.6767 -0.2075 -2.1392 33 1 1.6767 -1.7490 -1.2492 34 1 3.7329 1.0464 -2.3646 35 1 3.6408 1.2739 -0.6012 36 1 5.8652 0.2322 -0.3371 37 1 5.9573 1.6165 -1.4525 38 1 7.9223 -0.5164 -1.3672 39 1 7.9221 -1.0133 -3.0764 40 1 8.1195 0.6286 -4.8480 41 1 8.9291 2.8586 -5.5020 42 1 10.2196 8.8716 -2.4497 43 1 8.9300 4.0523 -1.3956 44 1 8.1102 1.8226 -0.7528 45 1 5.8658 -2.0393 -1.2497 46 1 5.9579 -2.2667 -3.0131 47 1 3.6417 -2.6095 -2.1616 48 1 3.7335 -1.2251 -3.2773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275400809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:39 Heat of formation + Delta-G solvation = -36.373862 kcal Electronic energy + Delta-G solvation = -26874.508782 eV Core-core repulsion = 23123.274383 eV Total energy + Delta-G solvation = -3751.234399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.74530 -39.05379 -37.77077 -36.72515 -34.98908 -32.42287 -31.77555 -30.99873 -30.21657 -30.17221 -27.70017 -25.68822 -24.70877 -23.88395 -22.95714 -22.01341 -21.13975 -20.30560 -19.77257 -17.86633 -17.57402 -17.23320 -16.55525 -15.48176 -15.15800 -15.09389 -15.02347 -14.69422 -14.57182 -14.30598 -13.99169 -13.86769 -13.74705 -13.50770 -13.15742 -12.84056 -12.72538 -12.55952 -12.43678 -12.21177 -12.15048 -12.01159 -11.64102 -11.37236 -11.34307 -11.20208 -11.08170 -10.77261 -10.68161 -10.54547 -10.46593 -10.15404 -10.13456 -9.37695 -8.86520 -8.45890 -8.26236 -8.17003 -7.29440 -6.41529 -4.08072 2.14559 2.20168 3.21974 3.25709 3.40490 3.65520 3.98574 3.99426 4.23853 4.58076 4.58848 4.72077 4.83294 4.87966 4.88185 5.01350 5.07635 5.11402 5.17877 5.21587 5.34159 5.36567 5.43138 5.44964 5.54180 5.56210 5.57714 5.67173 5.71673 5.77685 5.80122 5.84745 5.85804 6.03454 6.06285 6.14671 6.36046 6.59278 6.80416 6.85311 6.88620 7.03153 7.14121 7.22141 7.27972 7.35127 7.47759 7.62919 7.80697 8.04497 8.94009 9.56952 10.66202 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.002587 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.937081 B =10821.383043 C =11793.577863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.055 0.945 4 O -0.551 6.551 5 C 0.063 3.937 6 N -0.530 5.530 7 C 0.056 3.944 8 C 0.057 3.943 9 N -0.534 5.534 10 C 0.112 3.888 11 C -0.169 4.169 12 C -0.055 4.055 13 C -0.194 4.194 14 C 0.161 3.839 15 O -0.218 6.218 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.221 4.221 25 C -0.068 4.068 26 C 0.057 3.943 27 C 0.059 3.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.371 0.629 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.106 0.894 45 H 0.040 0.960 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 -18.153 2.510 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.073 0.927 4 O -0.355 6.355 5 C -0.066 4.066 6 N -0.254 5.254 7 C -0.072 4.072 8 C -0.071 4.071 9 N -0.259 5.259 10 C -0.014 4.014 11 C -0.170 4.170 12 C -0.074 4.074 13 C -0.213 4.213 14 C 0.109 3.891 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.240 4.240 25 C -0.086 4.086 26 C -0.071 4.071 27 C -0.069 4.069 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.124 0.876 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.025 -18.220 1.891 23.692 hybrid contribution -0.215 0.866 -0.107 0.899 sum -15.240 -17.355 1.785 23.165 Atomic orbital electron populations 1.22507 0.96516 1.02822 1.02595 1.21800 0.91971 0.95419 0.86397 0.92705 1.86655 1.76865 1.56775 1.15209 1.22107 0.88165 1.01265 0.95020 1.62101 1.06513 1.09835 1.46991 1.22223 0.95189 0.89423 1.00332 1.22186 0.93538 0.98703 0.92667 1.62215 1.07905 1.08532 1.47274 1.20794 0.86085 0.95165 0.99396 1.19145 1.08545 0.95674 0.93646 1.20448 0.96923 0.95106 0.94919 1.20211 1.09513 0.93419 0.98184 1.19134 0.91596 0.85863 0.92541 1.83574 1.73256 1.17481 1.38038 1.20762 1.48292 0.88360 0.89022 0.87658 1.24464 0.95917 0.94102 0.99530 1.69652 1.46156 1.03414 1.32650 0.86185 0.78622 0.78625 0.83489 1.19900 1.20805 1.18364 1.21233 1.08324 0.98058 0.96393 1.20656 0.97403 0.92757 0.97813 1.22122 0.94083 0.90472 1.00429 1.22134 0.94884 0.96956 0.92922 0.91632 0.91766 0.92110 0.78338 0.93551 0.90283 0.94084 0.90520 0.94335 0.89251 0.94775 0.90795 0.86967 0.86636 0.91077 0.85055 0.87630 0.94214 0.90504 0.90638 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 9.53 37.16 0.35 -0.80 16 2 C 0.10 0.86 3.46 -26.73 -0.09 0.77 16 3 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 4 O -0.55 -5.27 13.18 -35.23 -0.46 -5.73 16 5 C 0.06 0.58 4.65 -3.82 -0.02 0.56 16 6 N -0.53 -5.93 4.58 -234.47 -1.07 -7.01 16 7 C 0.06 0.68 5.41 -3.76 -0.02 0.66 16 8 C 0.06 0.76 5.25 -3.77 -0.02 0.74 16 9 N -0.53 -7.02 4.70 -235.90 -1.11 -8.13 16 10 C 0.11 1.51 5.12 -4.97 -0.03 1.49 16 11 C -0.17 -2.78 4.90 -104.57 -0.51 -3.29 16 12 C -0.06 -0.94 9.69 -39.61 -0.38 -1.33 16 13 C -0.19 -3.86 9.99 -39.39 -0.39 -4.25 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.22 -5.78 8.59 0.05 0.00 -5.78 16 16 C -0.39 -10.96 9.95 30.88 0.31 -10.66 16 17 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.48 13.96 55.48 0.77 -24.70 16 20 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 25 C -0.07 -1.21 7.91 -39.61 -0.31 -1.52 16 26 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 27 C 0.06 0.62 5.61 -3.77 -0.02 0.59 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.37 2.07 9.08 45.56 0.41 2.48 16 32 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.87 6.34 -51.93 -0.33 0.54 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.34 5.95 -51.93 -0.31 1.03 16 38 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 44 H 0.11 1.67 7.99 -52.48 -0.42 1.26 16 45 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 47 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -30.89 379.99 -9.90 -40.79 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.01 Total: 4.35 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.88 Total: -16.39 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -1.41 Total: -39.84 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.46 Total: -11.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.89 -9.90 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275400809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds