Wall clock time and date at job start Tue Mar 31 2020 13:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47235 * 2 1 4 4 C 1.46896 * 111.00140 * 282.35819 * 3 2 1 5 5 C 1.50694 * 109.47554 * 86.57800 * 4 3 2 6 6 O 1.21301 * 119.99905 * 6.86162 * 5 4 3 7 7 N 1.34776 * 120.00402 * 186.85729 * 5 4 3 8 8 C 1.40126 * 120.00470 * 185.29575 * 7 5 4 9 9 C 1.38727 * 120.08412 * 22.56223 * 8 7 5 10 10 C 1.38194 * 119.98425 * 179.97438 * 9 8 7 11 11 C 1.38287 * 120.15974 * 0.02562 * 10 9 8 12 12 C 1.38238 * 120.18345 * 0.02562 * 11 10 9 13 13 C 1.38555 * 120.01296 * 359.70928 * 12 11 10 14 14 O 1.35969 * 120.08529 * 180.29481 * 13 12 11 15 15 C 1.42897 * 117.00048 * 0.25366 * 14 13 12 16 16 C 1.46896 * 110.99862 * 158.39847 * 3 2 1 17 17 H 1.09009 * 109.47026 * 172.30450 * 16 3 2 18 18 C 1.53001 * 109.47256 * 52.30961 * 16 3 2 19 19 C 1.52997 * 109.47478 * 292.30592 * 16 3 2 20 20 C 1.50701 * 109.47081 * 295.16424 * 19 16 3 21 21 H 1.07999 * 120.00023 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99711 * 179.97438 * 20 19 16 23 23 N 1.31515 * 120.00248 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99608 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46811 * 60.00420 * 24 22 20 26 26 H 1.48506 * 109.46601 * 180.02562 * 24 22 20 27 27 H 1.48491 * 109.47049 * 299.99953 * 24 22 20 28 28 H 1.08999 * 109.47140 * 189.86842 * 1 2 3 29 29 H 1.09006 * 109.46638 * 309.86156 * 1 2 3 30 30 H 1.08997 * 109.47168 * 69.86250 * 1 2 3 31 31 H 1.09007 * 109.46818 * 240.00652 * 2 1 3 32 32 H 1.08994 * 109.47300 * 120.00251 * 2 1 3 33 33 H 1.09007 * 109.46851 * 206.58273 * 4 3 2 34 34 H 1.09001 * 109.47272 * 326.57264 * 4 3 2 35 35 H 0.97002 * 119.99535 * 5.30430 * 7 5 4 36 36 H 1.07999 * 120.00715 * 359.95617 * 9 8 7 37 37 H 1.07993 * 119.92407 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.90326 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.99944 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47653 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.46981 * 299.99752 * 15 14 13 42 42 H 1.09000 * 109.47300 * 59.99482 * 15 14 13 43 43 H 1.09000 * 109.46695 * 299.99556 * 18 16 3 44 44 H 1.09004 * 109.47085 * 59.99309 * 18 16 3 45 45 H 1.09000 * 109.47010 * 179.97438 * 18 16 3 46 46 H 1.08997 * 109.47086 * 55.16470 * 19 16 3 47 47 H 1.09004 * 109.47423 * 175.16412 * 19 16 3 48 48 H 0.96999 * 119.99773 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9185 1.9792 -1.3396 5 6 0.5452 2.5717 -1.5239 6 8 -0.2262 2.6172 -0.5889 7 7 0.1741 3.0512 -2.7276 8 6 -1.0584 3.7018 -2.8731 9 6 -1.6797 4.2691 -1.7700 10 6 -2.8949 4.9107 -1.9159 11 6 -3.4946 4.9886 -3.1596 12 6 -2.8819 4.4248 -4.2631 13 6 -1.6608 3.7845 -4.1263 14 8 -1.0541 3.2346 -5.2117 15 6 -1.7296 3.3588 -6.4648 16 6 3.3973 1.4562 0.5049 17 1 3.7829 2.4665 0.3674 18 6 4.2744 0.4666 -0.2648 19 6 3.4141 1.1020 1.9932 20 6 2.6481 2.1444 2.7663 21 1 2.1950 2.9766 2.2480 22 6 2.5257 2.0358 4.1353 23 7 3.0779 1.0227 4.7665 24 14 1.5768 3.3284 5.0937 25 1 0.1733 3.3717 4.6104 26 1 1.5930 2.9844 6.5383 27 1 2.2103 4.6565 4.8944 28 1 -0.3633 -1.0124 0.1761 29 1 -0.3633 0.6587 0.7889 30 1 -0.3633 0.3538 -0.9648 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.6695 2.7618 -1.4476 34 1 2.0859 1.2088 -2.0924 35 1 0.7602 2.9457 -3.4933 36 1 -1.2139 4.2091 -0.7975 37 1 -3.3779 5.3516 -1.0566 38 1 -4.4441 5.4914 -3.2690 39 1 -3.3531 4.4870 -5.2329 40 1 -1.1390 2.8789 -7.2452 41 1 -2.7060 2.8785 -6.4004 42 1 -1.8590 4.4141 -6.7049 43 1 3.8889 -0.5436 -0.1273 44 1 4.2624 0.7190 -1.3251 45 1 5.2967 0.5198 0.1096 46 1 2.9498 0.1268 2.1398 47 1 4.4444 1.0709 2.3478 48 1 2.9921 0.9465 5.7297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276297662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:28 Heat of formation + Delta-G solvation = -29.620318 kcal Electronic energy + Delta-G solvation = -27770.231745 eV Core-core repulsion = 24019.290202 eV Total energy + Delta-G solvation = -3750.941543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79931 -39.46061 -37.83784 -37.04817 -34.58202 -32.98796 -31.38065 -30.66962 -30.17251 -29.25655 -27.47926 -27.22661 -25.87869 -23.12462 -22.91267 -22.28373 -21.75250 -20.07396 -18.73143 -18.51564 -17.33488 -16.81620 -16.12219 -16.07873 -15.76184 -15.59408 -15.11386 -14.84377 -14.53061 -14.22629 -13.97435 -13.83785 -13.44081 -13.21189 -12.86033 -12.67977 -12.40141 -12.35022 -12.06661 -11.72593 -11.69403 -11.58829 -11.44553 -11.31134 -11.25649 -11.01021 -10.78217 -10.57492 -10.43555 -10.38521 -10.17690 -9.83995 -9.35667 -9.10954 -8.91785 -8.62284 -8.16975 -7.77962 -7.51943 -5.80954 -3.77627 1.24934 1.34099 2.88811 2.94678 3.14687 3.48955 3.51560 3.58136 3.78988 4.51303 4.64117 4.65668 4.76407 4.85379 4.91152 4.94886 5.15182 5.23652 5.36139 5.39115 5.50104 5.53408 5.57012 5.64564 5.76049 5.81477 5.83581 5.95410 6.04952 6.10472 6.17636 6.20277 6.32073 6.41029 6.45397 6.57781 6.62229 6.73824 6.79076 6.97026 7.07991 7.24152 7.45444 7.56996 7.70381 7.91300 8.02817 8.19951 8.44394 8.65170 9.28000 9.83970 11.31152 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.003512 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.918669 B = 7970.152703 C = 9266.627152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 N -0.491 5.491 4 C 0.039 3.961 5 C 0.507 3.493 6 O -0.478 6.478 7 N -0.674 5.674 8 C 0.137 3.863 9 C -0.102 4.102 10 C -0.131 4.131 11 C -0.110 4.110 12 C -0.189 4.189 13 C 0.085 3.915 14 O -0.321 6.321 15 C 0.031 3.969 16 C 0.087 3.913 17 H 0.071 0.929 18 C -0.184 4.184 19 C 0.032 3.968 20 C -0.486 4.486 21 H 0.061 0.939 22 C 0.051 3.949 23 N -0.907 5.907 24 Si 0.889 3.111 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.020 0.980 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.410 0.590 36 H 0.161 0.839 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 4.094 -23.336 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 N -0.214 5.214 4 C -0.093 4.093 5 C 0.294 3.706 6 O -0.349 6.349 7 N -0.320 5.320 8 C 0.041 3.959 9 C -0.123 4.123 10 C -0.150 4.150 11 C -0.129 4.129 12 C -0.208 4.208 13 C 0.038 3.962 14 O -0.235 6.235 15 C -0.064 4.064 16 C -0.020 4.020 17 H 0.089 0.911 18 C -0.243 4.243 19 C -0.005 4.005 20 C -0.524 4.524 21 H 0.079 0.921 22 C -0.148 4.148 23 N -0.548 5.548 24 Si 0.717 3.283 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.178 0.822 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.744 4.180 -22.098 24.129 hybrid contribution -0.033 0.248 -0.660 0.706 sum -8.778 4.427 -22.758 24.791 Atomic orbital electron populations 1.21779 0.95285 1.00212 1.02090 1.22165 0.95889 0.88706 1.00410 1.61673 1.22885 1.18455 1.18407 1.21980 0.93476 1.00152 0.93729 1.21149 0.90181 0.77798 0.81477 1.90676 1.52320 1.52226 1.39665 1.43576 1.18214 1.57390 1.12808 1.17198 0.88527 0.98816 0.91316 1.21582 0.95813 0.95459 0.99398 1.21050 0.95870 1.00608 0.97423 1.20883 0.99881 0.99864 0.92300 1.20966 0.95617 1.04134 1.00116 1.18664 0.92757 0.98470 0.86336 1.85981 1.47813 1.74389 1.15355 1.23000 0.98199 1.01719 0.83454 1.22060 0.83998 0.97660 0.98307 0.91130 1.22590 1.01484 1.01161 0.99048 1.19201 0.97019 0.97410 0.86912 1.21123 1.31484 1.08631 0.91198 0.92111 1.24973 0.96127 0.95710 0.97993 1.69952 1.45887 1.30417 1.08519 0.86703 0.80969 0.82077 0.78510 1.20213 1.21787 1.20603 0.94076 0.90334 0.94499 0.96204 0.89533 0.88380 0.92337 0.75500 0.82171 0.85596 0.86029 0.85510 0.88372 0.92765 0.92785 0.92735 0.94345 0.92369 0.96146 0.96241 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.51 37.16 0.32 -2.15 16 2 C 0.06 1.01 4.22 -3.82 -0.02 1.00 16 3 N -0.49 -9.30 3.61 -228.09 -0.82 -10.12 16 4 C 0.04 0.57 4.76 -4.98 -0.02 0.55 16 5 C 0.51 8.01 6.38 -10.99 -0.07 7.94 16 6 O -0.48 -9.34 10.81 5.54 0.06 -9.28 16 7 N -0.67 -8.80 5.31 -9.75 -0.05 -8.85 16 8 C 0.14 1.89 6.48 -83.49 -0.54 1.35 16 9 C -0.10 -1.50 8.75 -39.42 -0.34 -1.84 16 10 C -0.13 -1.60 10.04 -39.58 -0.40 -2.00 16 11 C -0.11 -1.15 10.04 -39.56 -0.40 -1.55 16 12 C -0.19 -1.95 9.04 -39.46 -0.36 -2.30 16 13 C 0.08 1.01 6.70 -39.07 -0.26 0.75 16 14 O -0.32 -3.31 9.88 -19.64 -0.19 -3.51 16 15 C 0.03 0.20 9.81 101.05 0.99 1.19 16 16 C 0.09 1.72 2.18 -67.72 -0.15 1.58 16 17 H 0.07 1.40 7.74 -51.92 -0.40 1.00 16 18 C -0.18 -2.97 8.56 37.16 0.32 -2.65 16 19 C 0.03 0.80 4.41 -27.88 -0.12 0.67 16 20 C -0.49 -13.86 8.83 -34.44 -0.30 -14.17 16 21 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 22 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 23 N -0.91 -27.76 13.29 55.43 0.74 -27.02 16 24 Si 0.89 22.88 29.54 -169.99 -5.02 17.86 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.68 7.53 -51.93 -0.39 1.29 16 30 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 31 H 0.02 0.32 7.03 -51.92 -0.36 -0.05 16 32 H 0.09 1.76 5.77 -51.93 -0.30 1.46 16 33 H 0.10 1.31 7.52 -51.93 -0.39 0.91 16 34 H 0.06 0.74 7.44 -51.93 -0.39 0.35 16 35 H 0.41 4.25 8.30 -40.82 -0.34 3.91 16 36 H 0.16 2.72 5.62 -52.49 -0.29 2.43 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 42 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 43 H 0.05 0.88 6.71 -51.93 -0.35 0.54 16 44 H 0.04 0.52 7.53 -51.93 -0.39 0.13 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.55 6.17 -51.93 -0.32 0.23 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -33.64 378.01 -8.52 -42.15 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.46 Total: 3.30 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.46 Total: -10.22 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.14 Total: -45.99 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.13 Total: -12.79 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.64 -8.52 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276297662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.533 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds