Wall clock time and date at job start Tue Mar 31 2020 13:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.39670 * 119.99908 * 179.97438 * 16 15 13 18 18 C 1.38836 * 120.04580 * 0.02562 * 17 16 15 19 19 C 1.38573 * 119.86982 * 179.97438 * 18 17 16 20 20 O 1.35899 * 120.01782 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99717 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.96537 * 359.97438 * 19 18 17 23 23 C 1.50700 * 119.95243 * 180.02562 * 22 19 18 24 24 C 1.38166 * 120.09209 * 0.02562 * 22 19 18 25 25 C 1.38160 * 120.13319 * 359.74265 * 24 22 19 26 26 C 1.50698 * 119.98893 * 180.27900 * 25 24 22 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.06213 * 359.95993 * 18 17 16 39 39 H 1.09003 * 109.47431 * 60.00206 * 21 20 19 40 40 H 1.09000 * 109.47125 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47111 * 300.00226 * 21 20 19 42 42 H 1.08995 * 109.47172 * 90.00344 * 23 22 19 43 43 H 1.09005 * 109.47006 * 210.00498 * 23 22 19 44 44 H 1.09001 * 109.47200 * 330.00278 * 23 22 19 45 45 H 1.08003 * 119.93625 * 180.02562 * 24 22 19 46 46 H 1.09002 * 109.46661 * 270.23467 * 26 25 24 47 47 H 1.08997 * 109.47215 * 30.22727 * 26 25 24 48 48 H 1.08991 * 109.47612 * 150.23166 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 2.1547 1.7644 4.9026 18 6 1.6998 0.4777 5.1574 19 6 1.5476 0.0458 6.4653 20 8 1.1021 -1.2130 6.7181 21 6 0.8092 -2.0367 5.5878 22 6 1.8505 0.8996 7.5171 23 6 1.6855 0.4294 8.9393 24 6 2.3031 2.1798 7.2618 25 6 2.4608 2.6129 5.9594 26 6 2.9607 4.0078 5.6847 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6747 3.5148 -4.4447 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 2.6275 3.1026 3.4086 38 1 1.4648 -0.1853 4.3378 39 1 1.7091 -2.1601 4.9851 40 1 0.4635 -3.0125 5.9291 41 1 0.0313 -1.5658 4.9869 42 1 2.6145 -0.0265 9.2814 43 1 1.4414 1.2792 9.5769 44 1 0.8810 -0.3044 8.9884 45 1 2.5384 2.8418 8.0821 46 1 2.1138 4.6910 5.6206 47 1 3.6212 4.3227 6.4925 48 1 3.5084 4.0186 4.7425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280007290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:50 Heat of formation + Delta-G solvation = -54.796038 kcal Electronic energy + Delta-G solvation = -27216.520529 eV Core-core repulsion = 23464.487285 eV Total energy + Delta-G solvation = -3752.033244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44342 -39.35322 -38.03189 -35.72200 -35.16605 -32.93359 -32.42795 -31.09164 -30.22362 -28.53117 -27.97440 -26.83814 -26.35363 -24.62040 -23.14890 -22.76214 -21.54242 -20.54608 -18.88289 -18.15274 -16.80722 -16.60261 -16.33801 -15.88502 -15.69608 -15.30772 -15.06419 -14.87976 -14.59936 -14.10772 -13.94413 -13.62407 -13.59240 -13.49711 -13.26177 -13.04502 -12.77581 -12.44530 -12.25217 -12.12387 -12.09834 -11.91359 -11.85637 -11.70441 -11.30324 -11.17840 -11.09402 -10.99165 -10.95927 -10.82537 -10.61042 -10.21056 -9.72991 -9.64486 -9.15340 -8.50261 -8.34033 -7.83036 -7.18709 -6.11307 -4.16482 1.44491 1.62441 3.17295 3.20214 3.25622 3.30938 3.32899 3.38193 3.79933 3.91266 4.38876 4.76456 4.82786 4.91990 4.98928 5.02490 5.05601 5.14946 5.23082 5.23510 5.30843 5.32149 5.39796 5.48855 5.51267 5.53005 5.64601 5.67495 5.69115 5.72290 5.73447 5.91669 5.93712 6.12218 6.14832 6.20488 6.37606 6.47340 6.56935 6.76169 6.90900 7.16630 7.33015 7.40489 7.47771 7.82628 7.84337 8.14475 8.24992 8.75866 8.91802 9.48881 10.96862 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002953 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.215840 B = 9480.233216 C =10306.673179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.538 6.538 15 C 0.103 3.897 16 N -0.726 5.726 17 C 0.258 3.742 18 C -0.284 4.284 19 C 0.167 3.833 20 O -0.316 6.316 21 C 0.027 3.973 22 C -0.181 4.181 23 C -0.092 4.092 24 C -0.036 4.036 25 C -0.193 4.193 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.413 0.587 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.125 0.875 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -8.659 19.636 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.415 6.415 15 C -0.025 4.025 16 N -0.359 5.359 17 C 0.152 3.848 18 C -0.308 4.308 19 C 0.121 3.879 20 O -0.229 6.229 21 C -0.068 4.068 22 C -0.183 4.183 23 C -0.149 4.149 24 C -0.055 4.055 25 C -0.198 4.198 26 C -0.160 4.160 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.143 0.857 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.415 -8.163 19.419 22.020 hybrid contribution 1.030 -0.032 -1.005 1.439 sum -5.385 -8.195 18.413 20.862 Atomic orbital electron populations 1.22232 0.96543 1.01620 1.02463 1.21478 0.93681 0.83996 1.02918 1.48223 1.63149 1.13322 1.07552 1.19320 0.96457 0.93661 0.77820 1.21406 0.96819 1.32144 1.06369 0.92459 1.24933 0.97935 0.94822 0.96358 1.69928 1.35742 1.33318 1.14280 0.86487 0.84540 0.77731 0.78621 1.20594 1.21031 1.19882 1.20152 0.78974 0.87086 0.85186 1.90663 1.46073 1.18036 1.86760 1.21190 1.01381 0.93759 0.86207 1.44622 1.72573 1.17568 1.01126 1.17323 0.91610 0.91721 0.84144 1.20579 1.16898 0.97422 0.95885 1.18478 0.93213 0.83790 0.92408 1.86034 1.80280 1.22313 1.34245 1.23028 1.00601 0.94275 0.88887 1.18901 1.10927 0.94178 0.94326 1.20429 1.01647 1.00819 0.91994 1.20433 0.95789 0.93980 0.95307 1.19256 1.11124 0.97391 0.92004 1.20547 1.00613 0.92786 1.02046 0.91956 0.93073 0.91848 0.89560 0.91758 0.94778 0.93802 0.92636 0.89944 0.89939 0.74621 0.85564 0.92645 0.88505 0.92694 0.92345 0.92389 0.91868 0.85688 0.91839 0.91744 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.53 5.93 -4.05 -0.02 1.50 16 3 N -0.59 -11.82 2.46 -175.06 -0.43 -12.25 16 4 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 C 0.50 9.91 7.74 -10.98 -0.09 9.82 16 14 O -0.54 -12.89 15.25 5.56 0.08 -12.80 16 15 C 0.10 1.51 3.94 -5.19 -0.02 1.49 16 16 N -0.73 -10.94 5.60 -59.82 -0.34 -11.28 16 17 C 0.26 3.59 6.63 -83.81 -0.56 3.04 16 18 C -0.28 -3.64 8.30 -39.24 -0.33 -3.97 16 19 C 0.17 2.10 6.66 -39.24 -0.26 1.84 16 20 O -0.32 -3.59 9.53 -19.42 -0.19 -3.78 16 21 C 0.03 0.22 9.81 101.05 0.99 1.21 16 22 C -0.18 -2.17 5.90 -104.43 -0.62 -2.78 16 23 C -0.09 -0.89 9.79 36.01 0.35 -0.53 16 24 C -0.04 -0.42 9.34 -39.64 -0.37 -0.79 16 25 C -0.19 -2.48 5.90 -104.39 -0.62 -3.10 16 26 C -0.10 -1.18 9.57 36.00 0.34 -0.83 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.33 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.08 1.05 6.99 -51.93 -0.36 0.68 16 36 H 0.08 1.10 7.21 -51.93 -0.37 0.72 16 37 H 0.41 6.72 5.43 -40.82 -0.22 6.50 16 38 H 0.13 1.42 4.97 -52.49 -0.26 1.16 16 39 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 44 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 45 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 48 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -32.69 388.99 -8.14 -40.83 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.60 Total: 4.21 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.25 Total: -1.94 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.03 Total: -48.95 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.10 Total: -16.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.69 -8.14 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280007290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.965 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds