Wall clock time and date at job start Tue Mar 31 2020 13:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.39670 * 119.99908 * 179.97438 * 16 15 13 18 18 C 1.38836 * 120.04580 * 0.02562 * 17 16 15 19 19 C 1.38573 * 119.86982 * 179.97438 * 18 17 16 20 20 O 1.35899 * 120.01782 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99717 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.96537 * 359.97438 * 19 18 17 23 23 C 1.50700 * 119.95243 * 180.02562 * 22 19 18 24 24 C 1.38166 * 120.09209 * 0.02562 * 22 19 18 25 25 C 1.38160 * 120.13319 * 359.74265 * 24 22 19 26 26 C 1.50698 * 119.98893 * 180.27900 * 25 24 22 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.06213 * 359.95993 * 18 17 16 39 39 H 1.09003 * 109.47431 * 60.00206 * 21 20 19 40 40 H 1.09000 * 109.47125 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47111 * 300.00226 * 21 20 19 42 42 H 1.08995 * 109.47172 * 90.00344 * 23 22 19 43 43 H 1.09005 * 109.47006 * 210.00498 * 23 22 19 44 44 H 1.09001 * 109.47200 * 330.00278 * 23 22 19 45 45 H 1.08003 * 119.93625 * 180.02562 * 24 22 19 46 46 H 1.09002 * 109.46661 * 270.23467 * 26 25 24 47 47 H 1.08997 * 109.47215 * 30.22727 * 26 25 24 48 48 H 1.08991 * 109.47612 * 150.23166 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 2.1547 1.7644 4.9026 18 6 1.6998 0.4777 5.1574 19 6 1.5476 0.0458 6.4653 20 8 1.1021 -1.2130 6.7181 21 6 0.8092 -2.0367 5.5878 22 6 1.8505 0.8996 7.5171 23 6 1.6855 0.4294 8.9393 24 6 2.3031 2.1798 7.2618 25 6 2.4608 2.6129 5.9594 26 6 2.9607 4.0078 5.6847 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6747 3.5148 -4.4447 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 2.6275 3.1026 3.4086 38 1 1.4648 -0.1853 4.3378 39 1 1.7091 -2.1601 4.9851 40 1 0.4635 -3.0125 5.9291 41 1 0.0313 -1.5658 4.9869 42 1 2.6145 -0.0265 9.2814 43 1 1.4414 1.2792 9.5769 44 1 0.8810 -0.3044 8.9884 45 1 2.5384 2.8418 8.0821 46 1 2.1138 4.6910 5.6206 47 1 3.6212 4.3227 6.4925 48 1 3.5084 4.0186 4.7425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280007290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:49 Heat of formation + Delta-G solvation = -74.756487 kcal Electronic energy + Delta-G solvation = -27217.386079 eV Core-core repulsion = 23464.487285 eV Total energy + Delta-G solvation = -3752.898794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41488 -40.78141 -38.95317 -37.16880 -36.34297 -34.94222 -33.40738 -32.07134 -31.63421 -29.95779 -28.68907 -28.20259 -27.41066 -25.71124 -24.75182 -24.10310 -22.59855 -21.45164 -20.19372 -19.31193 -18.63351 -17.93053 -17.70788 -17.08255 -16.74199 -16.53414 -16.41774 -16.03568 -15.81849 -15.32513 -15.07992 -14.78452 -14.61066 -14.49290 -14.47973 -14.04231 -13.94322 -13.85323 -13.58134 -13.29912 -13.27362 -13.10069 -12.83723 -12.72494 -12.69564 -12.63372 -12.52481 -12.21370 -12.05241 -12.01566 -11.86133 -11.79990 -11.75128 -10.78912 -10.66880 -10.58398 -9.53932 -9.25372 -8.25825 -8.17379 -6.40385 0.53393 0.67932 1.34621 1.37506 1.47437 1.65075 1.99613 2.35542 2.47140 2.61729 2.87486 3.04406 3.49121 3.90235 4.02391 4.10885 4.15669 4.20586 4.26478 4.28928 4.40587 4.46553 4.46793 4.60920 4.63311 4.66921 4.80265 4.80757 4.82748 4.87161 4.90389 4.95235 4.97982 5.02375 5.13225 5.17668 5.22822 5.36430 5.37591 5.52733 5.58097 5.68182 5.77865 5.90068 6.02002 6.18207 6.54349 6.63715 6.68183 6.74360 7.20373 7.35347 8.81546 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002953 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.215840 B = 9480.233216 C =10306.673179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.590 6.590 15 C 0.120 3.880 16 N -0.738 5.738 17 C 0.237 3.763 18 C -0.287 4.287 19 C 0.157 3.843 20 O -0.326 6.326 21 C 0.018 3.982 22 C -0.189 4.189 23 C -0.090 4.090 24 C -0.037 4.037 25 C -0.207 4.207 26 C -0.100 4.100 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.025 0.975 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.404 0.596 38 H 0.141 0.859 39 H 0.059 0.941 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.149 0.851 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 -10.979 21.431 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.280 3.720 14 O -0.472 6.472 15 C -0.007 4.007 16 N -0.371 5.371 17 C 0.133 3.867 18 C -0.311 4.311 19 C 0.110 3.890 20 O -0.239 6.239 21 C -0.076 4.076 22 C -0.192 4.192 23 C -0.146 4.146 24 C -0.056 4.056 25 C -0.211 4.211 26 C -0.157 4.157 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.158 0.842 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.166 0.834 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.384 -10.554 21.242 24.564 hybrid contribution 0.951 0.648 -1.498 1.889 sum -5.433 -9.906 19.744 22.748 Atomic orbital electron populations 1.22170 0.94370 1.03770 1.01722 1.21841 0.95454 0.81019 1.04341 1.48218 1.63218 1.15225 1.05968 1.18742 0.95405 0.91577 0.80187 1.21689 0.97829 1.32101 1.06550 0.92836 1.25840 1.02326 0.94437 0.96454 1.70047 1.37773 1.34167 1.14758 0.85427 0.79031 0.78221 0.78202 1.18743 1.20706 1.19857 1.21062 0.77639 0.86666 0.86649 1.90632 1.48307 1.20544 1.87679 1.21127 1.03318 0.93287 0.82989 1.44636 1.73561 1.17249 1.01664 1.17531 0.92878 0.92605 0.83687 1.20736 1.16567 0.97125 0.96632 1.18668 0.93298 0.84509 0.92481 1.86029 1.80074 1.21934 1.35854 1.23302 1.01075 0.94813 0.88448 1.19309 1.10119 0.94279 0.95493 1.20451 1.01866 1.01422 0.90885 1.20706 0.95154 0.94310 0.95423 1.19511 1.11315 0.97798 0.92489 1.20536 1.00831 0.92522 1.01842 0.88265 0.92226 0.94212 0.90493 0.87956 0.95660 0.98448 0.92373 0.87236 0.87828 0.75702 0.84158 0.92226 0.86221 0.92034 0.91755 0.90777 0.92102 0.83374 0.91630 0.89941 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.67 5.93 86.38 0.51 3.18 16 3 N -0.60 -24.14 2.46 -826.16 -2.03 -26.17 16 4 C 0.26 13.87 5.16 85.64 0.44 14.31 16 5 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 9 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.49 19.74 7.74 87.66 0.68 20.42 16 14 O -0.59 -29.68 15.25 -3.03 -0.05 -29.72 16 15 C 0.12 3.37 3.94 85.63 0.34 3.71 16 16 N -0.74 -21.99 5.60 -343.17 -1.92 -23.92 16 17 C 0.24 6.37 6.63 38.20 0.25 6.62 16 18 C -0.29 -6.80 8.30 22.49 0.19 -6.61 16 19 C 0.16 3.64 6.66 22.49 0.15 3.79 16 20 O -0.33 -6.65 9.53 -92.41 -0.88 -7.54 16 21 C 0.02 0.23 9.81 113.37 1.11 1.35 16 22 C -0.19 -4.16 5.90 -19.74 -0.12 -4.28 16 23 C -0.09 -1.51 9.79 71.24 0.70 -0.82 16 24 C -0.04 -0.80 9.34 22.23 0.21 -0.59 16 25 C -0.21 -5.12 5.90 -19.72 -0.12 -5.24 16 26 C -0.10 -2.27 9.57 71.24 0.68 -1.59 16 27 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 2.30 8.07 -2.38 -0.02 2.28 16 31 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 32 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 33 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.11 2.47 6.99 -2.39 -0.02 2.45 16 36 H 0.10 2.47 7.21 -2.39 -0.02 2.45 16 37 H 0.40 13.58 5.43 -92.71 -0.50 13.08 16 38 H 0.14 2.75 4.97 -2.91 -0.01 2.74 16 39 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 44 H 0.06 1.06 7.52 -2.39 -0.02 1.04 16 45 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 48 H 0.04 1.17 6.54 -2.39 -0.02 1.15 16 Total: -1.00 -74.33 388.99 4.36 -69.97 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.46 Total: 24.55 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.47 Total: 1.65 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.67 Total: -105.55 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.93 Total: -37.26 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -74.33 4.36 -69.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280007290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.785 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds