Wall clock time and date at job start Tue Mar 31 2020 12:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47152 * 296.62274 * 3 2 1 5 5 C 1.37099 * 119.99585 * 96.29597 * 4 3 2 6 6 H 1.07999 * 119.99637 * 157.64552 * 5 4 3 7 7 C 1.38954 * 120.00453 * 337.64662 * 5 4 3 8 8 N 1.31407 * 119.99620 * 349.05734 * 7 5 4 9 9 Si 1.86802 * 120.00180 * 169.05559 * 7 5 4 10 10 H 1.48507 * 109.46831 * 60.00072 * 9 7 5 11 11 H 1.48502 * 109.46854 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47050 * 300.00122 * 9 7 5 13 13 C 1.34772 * 120.00317 * 276.29375 * 4 3 2 14 14 O 1.21288 * 120.00337 * 184.99072 * 13 4 3 15 15 C 1.50703 * 119.99684 * 5.00073 * 13 4 3 16 16 H 1.08995 * 109.46764 * 331.47268 * 15 13 4 17 17 C 1.52994 * 109.47477 * 91.47891 * 15 13 4 18 18 N 1.46506 * 109.46508 * 211.47712 * 15 13 4 19 19 C 1.34777 * 119.99673 * 154.99460 * 18 15 13 20 20 O 1.21288 * 119.99956 * 0.02562 * 19 18 15 21 21 C 1.50698 * 120.00017 * 179.97438 * 19 18 15 22 22 C 1.53001 * 109.47091 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47434 * 295.00312 * 22 21 19 24 24 C 1.52996 * 109.47416 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47441 * 59.99934 * 24 23 22 26 26 C 1.53000 * 109.47172 * 300.00206 * 25 24 23 27 27 C 1.53001 * 109.47123 * 59.99910 * 26 25 24 28 28 H 4.40639 * 5.51523 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46903 * 176.62255 * 3 2 1 30 30 H 1.08998 * 109.47306 * 56.62840 * 3 2 1 31 31 H 0.97002 * 120.00161 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47179 * 185.92920 * 17 15 13 33 33 H 1.08997 * 109.46968 * 305.93036 * 17 15 13 34 34 H 1.09005 * 109.47393 * 65.93166 * 17 15 13 35 35 H 0.96997 * 120.00249 * 334.99713 * 18 15 13 36 36 H 1.08996 * 109.47207 * 300.00493 * 21 19 18 37 37 H 1.08999 * 109.46755 * 60.00880 * 21 19 18 38 38 H 1.08996 * 109.47158 * 55.00754 * 22 21 19 39 39 H 1.09005 * 109.47021 * 300.00383 * 23 22 21 40 40 H 1.09000 * 109.46963 * 59.99425 * 23 22 21 41 41 H 1.09004 * 109.46722 * 299.99621 * 24 23 22 42 42 H 1.09000 * 109.47206 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47619 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.47417 * 60.00113 * 25 24 23 45 45 H 1.08995 * 109.47162 * 300.00273 * 26 25 24 46 46 H 1.08996 * 109.47291 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47223 * 180.02562 * 27 26 25 48 48 H 1.08996 * 109.47158 * 59.99738 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6181 1.2348 5 6 3.4864 -1.9431 1.2448 6 1 4.1633 -2.3163 1.9991 7 6 2.9722 -2.8059 0.2846 8 7 1.9914 -2.4109 -0.4957 9 14 3.6751 -4.5270 0.1030 10 1 3.5056 -5.2681 1.3787 11 1 2.9584 -5.2423 -0.9834 12 1 5.1195 -4.4392 -0.2303 13 6 3.2383 0.1152 2.3608 14 8 3.7271 -0.3712 3.3585 15 6 2.7467 1.5397 2.3802 16 1 2.8215 1.9635 1.3788 17 6 1.2874 1.5695 2.8390 18 7 3.5657 2.3263 3.3058 19 6 3.6763 3.6594 3.1415 20 8 3.0974 4.2080 2.2278 21 6 4.5184 4.4687 4.0939 22 6 4.4741 5.9430 3.6873 23 6 5.1341 6.1144 2.3177 24 6 5.0904 7.5888 1.9113 25 6 5.8421 8.4260 2.9479 26 6 5.1822 8.2547 4.3176 27 6 5.2259 6.7803 4.7240 28 1 -1.0499 0.0001 0.0003 29 1 3.0088 1.0267 -0.0605 30 1 3.0096 -0.5644 -0.8582 31 1 1.6322 -3.0133 -1.1658 32 1 0.9001 2.5847 2.7527 33 1 0.6963 0.9006 2.2136 34 1 1.2264 1.2444 3.8776 35 1 4.0285 1.8877 4.0368 36 1 4.1289 4.3594 5.1060 37 1 5.5481 4.1130 4.0605 38 1 3.4371 6.2745 3.6350 39 1 6.1712 5.7829 2.3701 40 1 4.5988 5.5175 1.5792 41 1 4.0534 7.9206 1.8590 42 1 5.5610 7.7109 0.9358 43 1 5.8106 9.4764 2.6587 44 1 6.8791 8.0942 3.0003 45 1 4.1453 8.5865 4.2653 46 1 5.7180 8.8508 5.0562 47 1 4.7553 6.6582 5.6996 48 1 6.2628 6.4485 4.7762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282118946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:12 Heat of formation + Delta-G solvation = -33.016176 kcal Electronic energy + Delta-G solvation = -27577.563559 eV Core-core repulsion = 23826.474761 eV Total energy + Delta-G solvation = -3751.088798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.07693 -38.94701 -37.91243 -35.43775 -34.36130 -32.79549 -32.18354 -31.27908 -30.77783 -30.18353 -27.05184 -26.62484 -25.09873 -23.29295 -22.68265 -21.65911 -20.02077 -19.76270 -19.17524 -17.91945 -17.23286 -16.56110 -15.81940 -15.79891 -15.34725 -15.25525 -14.56995 -14.31581 -14.25109 -14.22735 -13.95543 -13.73111 -13.36421 -12.98682 -12.63321 -12.46184 -12.35192 -12.23675 -12.05536 -11.81376 -11.73291 -11.65220 -11.47876 -11.19459 -11.05343 -11.03395 -10.98405 -10.58978 -10.51568 -10.42123 -10.30177 -10.10168 -9.46087 -9.39264 -9.24845 -8.94800 -8.77837 -8.40770 -7.92583 -6.36608 -3.99858 2.89344 3.11917 3.20536 3.22317 3.37321 3.61776 3.89997 4.05008 4.15114 4.55821 4.63567 4.65737 4.81007 4.97691 5.00982 5.03644 5.15473 5.29030 5.40336 5.41706 5.41831 5.47835 5.54723 5.58659 5.62959 5.65165 5.68144 5.81763 5.83803 5.93273 6.03715 6.09542 6.11087 6.14051 6.21458 6.24479 6.34997 6.45288 6.48805 6.61387 6.77046 6.81761 7.03104 7.47718 7.84753 7.96896 8.32497 8.52931 8.79866 9.02083 9.24328 9.76017 10.62227 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002780 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.170556 B =10070.444948 C =10334.734876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.106 4.106 3 C 0.228 3.772 4 N -0.431 5.431 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.868 5.868 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.447 3.553 14 O -0.583 6.583 15 C 0.129 3.871 16 H 0.097 0.903 17 C -0.153 4.153 18 N -0.710 5.710 19 C 0.511 3.489 20 O -0.544 6.544 21 C -0.138 4.138 22 C -0.069 4.069 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.115 4.115 28 H 0.199 0.801 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.271 0.729 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 16.476 5.075 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.108 4.108 3 C 0.105 3.895 4 N -0.149 5.149 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.506 5.506 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.235 3.765 14 O -0.468 6.468 15 C 0.021 3.979 16 H 0.115 0.885 17 C -0.211 4.211 18 N -0.363 5.363 19 C 0.298 3.702 20 O -0.422 6.422 21 C -0.178 4.178 22 C -0.088 4.088 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.153 4.153 28 H 0.216 0.784 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.818 16.487 4.724 17.570 hybrid contribution 0.072 -1.291 0.112 1.297 sum 3.890 15.196 4.836 16.414 Atomic orbital electron populations 1.24225 0.95334 1.06167 1.02316 1.23032 0.94205 0.95389 0.98162 1.18395 0.84512 0.95856 0.90737 1.43627 1.55186 1.09878 1.06199 1.19638 1.26361 0.82714 1.15449 0.87930 1.25388 0.95029 0.99966 0.96804 1.69963 1.22505 1.36888 1.21209 0.85950 0.78922 0.81474 0.78072 1.19837 1.20928 1.19824 1.20042 0.85041 0.87691 0.83728 1.90501 1.49475 1.73290 1.33515 1.20832 0.91395 0.90893 0.94815 0.88474 1.22057 0.94557 1.02457 1.02079 1.45970 1.50574 1.07126 1.32621 1.20661 0.81543 0.82173 0.85844 1.90645 1.47491 1.70680 1.33361 1.21755 1.00880 0.95796 0.99350 1.20892 1.00670 0.92103 0.95105 1.21722 1.00267 0.96509 0.97365 1.21497 1.00469 0.95480 0.98010 1.21556 0.99518 0.99465 0.95221 1.21507 1.00921 0.96319 0.96800 1.21611 1.00564 0.94945 0.98175 0.78390 0.92055 0.86561 0.91873 0.92114 0.90313 0.92473 0.75737 0.89037 0.88997 0.90415 0.92778 0.89696 0.92049 0.92341 0.92483 0.92213 0.92046 0.92313 0.92075 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 18.18 29.55 0.54 -4.78 16 2 C -0.11 -2.34 9.70 -37.12 -0.36 -2.70 16 3 C 0.23 5.05 4.84 -6.83 -0.03 5.02 16 4 N -0.43 -10.64 2.60 -117.93 -0.31 -10.95 16 5 C -0.31 -8.38 9.32 -14.93 -0.14 -8.52 16 6 H 0.10 2.86 7.37 -52.49 -0.39 2.47 16 7 C 0.03 0.82 5.09 -17.47 -0.09 0.73 16 8 N -0.87 -22.12 9.09 55.50 0.50 -21.62 16 9 Si 0.93 20.12 29.57 -169.99 -5.03 15.09 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.45 10.51 6.72 -10.99 -0.07 10.44 16 14 O -0.58 -15.12 15.81 5.55 0.09 -15.04 16 15 C 0.13 2.50 2.27 -69.08 -0.16 2.34 16 16 H 0.10 1.92 5.31 -51.93 -0.28 1.65 16 17 C -0.15 -2.81 9.36 37.15 0.35 -2.47 16 18 N -0.71 -11.78 5.06 -54.93 -0.28 -12.06 16 19 C 0.51 7.75 7.51 -10.99 -0.08 7.66 16 20 O -0.54 -9.70 13.63 5.55 0.08 -9.63 16 21 C -0.14 -1.51 5.17 -27.88 -0.14 -1.65 16 22 C -0.07 -0.73 1.84 -90.62 -0.17 -0.90 16 23 C -0.12 -1.39 4.94 -26.73 -0.13 -1.52 16 24 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 25 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 26 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 27 C -0.12 -0.98 5.20 -26.73 -0.14 -1.12 16 28 H 0.20 3.30 7.80 -54.09 -0.42 2.87 16 29 H 0.06 1.20 6.21 -51.93 -0.32 0.88 16 30 H 0.12 2.70 6.44 -51.93 -0.33 2.37 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.55 5.38 -51.93 -0.28 1.27 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 6.45 7.87 -40.82 -0.32 6.13 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -29.90 379.45 -8.03 -37.93 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.70 Total: 11.63 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.11 Total: -1.07 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.08 Total: -44.63 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.16 Total: -24.66 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.90 -8.03 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282118946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.911 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds