Wall clock time and date at job start Tue Mar 31 2020 13:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47037 * 2 1 4 4 C 1.34773 * 119.99747 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00006 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47084 * 300.00149 * 6 4 3 8 8 C 1.52998 * 109.46905 * 59.99696 * 6 4 3 9 9 N 1.46900 * 109.47329 * 179.97438 * 6 4 3 10 10 C 1.46896 * 111.00195 * 154.99818 * 9 6 4 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 6 12 12 C 1.38284 * 119.97210 * 269.97968 * 11 10 9 13 13 C 1.38250 * 120.10839 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.05581 * 359.68103 * 13 12 11 15 15 C 1.38710 * 119.94432 * 0.61525 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.67631 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.08994 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47268 * 300.00584 * 1 2 3 30 30 H 1.09001 * 109.46647 * 60.00329 * 1 2 3 31 31 H 1.09004 * 109.47264 * 239.99785 * 2 1 3 32 32 H 1.09001 * 109.47115 * 119.99925 * 2 1 3 33 33 H 0.96995 * 120.00223 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47273 * 179.97438 * 8 6 4 35 35 H 1.08994 * 109.47265 * 300.00391 * 8 6 4 36 36 H 1.09001 * 109.46880 * 60.00328 * 8 6 4 37 37 H 1.00903 * 110.99490 * 31.04520 * 9 6 4 38 38 H 1.09005 * 109.46944 * 59.99947 * 10 9 6 39 39 H 1.09002 * 109.47398 * 300.00389 * 10 9 6 40 40 H 1.07994 * 119.94418 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.97138 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.02996 * 180.29325 * 14 13 12 43 43 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 44 44 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 45 45 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 46 46 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 47 47 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 48 48 H 1.07999 * 120.02419 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8458 3.0483 -0.0001 7 1 3.4829 3.5617 -0.8905 8 6 3.3351 3.7703 1.2485 9 7 5.3148 3.0483 0.0013 10 6 5.8418 4.2908 -0.5787 11 6 7.3482 4.2547 -0.5598 12 6 8.0373 4.7457 0.5340 13 6 9.4193 4.7145 0.5541 14 6 10.1152 4.1862 -0.5162 15 6 9.4265 3.6986 -1.6171 16 8 10.1089 3.1845 -2.6739 17 6 11.5352 3.1830 -2.5864 18 6 12.1236 2.5702 -3.8588 19 6 13.6277 2.5680 -3.7663 20 1 14.1153 2.9636 -2.8876 21 6 14.3815 2.0599 -4.8030 22 7 13.7878 1.5776 -5.8728 23 14 16.2460 2.0578 -4.6886 24 1 16.6630 2.6515 -3.3929 25 1 16.7458 0.6622 -4.7767 26 1 16.8113 2.8574 -5.8048 27 6 8.0395 3.7314 -1.6351 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 3.6988 4.7979 1.2483 35 1 2.2452 3.7703 1.2479 36 1 3.6980 3.2570 2.1389 37 1 5.6768 2.2409 -0.4836 38 1 5.4917 5.1417 0.0057 39 1 5.4932 4.3883 -1.6069 40 1 7.4950 5.1544 1.3737 41 1 9.9552 5.0990 1.4093 42 1 11.1947 4.1577 -0.4979 43 1 11.8936 4.2065 -2.4762 44 1 11.8456 2.5944 -1.7230 45 1 11.7652 1.5467 -3.9686 46 1 11.8133 3.1583 -4.7225 47 1 14.3180 1.2198 -6.6020 48 1 7.5008 3.3480 -2.4890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338957261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:50 Heat of formation + Delta-G solvation = -89.774301 kcal Electronic energy + Delta-G solvation = -25559.431310 eV Core-core repulsion = 21805.881295 eV Total energy + Delta-G solvation = -3753.550015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19558 -40.92326 -38.87332 -37.04135 -36.28378 -35.48433 -33.36516 -32.59402 -31.54763 -30.64882 -29.89216 -27.15441 -26.51574 -24.91566 -23.57220 -23.33559 -23.02240 -21.55842 -21.15545 -19.29655 -18.46074 -17.89393 -17.50404 -17.03776 -16.95400 -16.85683 -16.73509 -16.43468 -15.88943 -15.57505 -15.49274 -15.02241 -14.49148 -14.35944 -14.35225 -14.22616 -14.12879 -13.44230 -13.35182 -13.26519 -13.14414 -12.95866 -12.82367 -12.68034 -12.59246 -12.56548 -12.48080 -12.36766 -12.21361 -11.85777 -11.60614 -11.57196 -11.38403 -10.85103 -10.64795 -10.16145 -9.88716 -9.44612 -9.09349 -8.28598 -6.42596 0.32890 0.54632 1.39639 1.41016 1.54596 1.55111 2.10654 2.26232 2.50172 2.76524 3.05736 3.31756 3.70142 3.81178 3.90973 4.11182 4.13566 4.14717 4.17737 4.21020 4.24368 4.25589 4.38093 4.46591 4.50210 4.56462 4.62452 4.71254 4.78709 4.85956 4.91345 4.96727 5.04265 5.10885 5.25472 5.29567 5.35198 5.42175 5.42919 5.43837 5.52602 5.63576 5.66906 5.87250 5.96181 6.06093 6.19524 6.52859 6.56275 6.72288 7.20055 7.27658 8.84880 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.001941 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.038806 B =14419.614719 C =15637.424275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 N -0.714 5.714 4 C 0.504 3.496 5 O -0.582 6.582 6 C 0.067 3.933 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.681 5.681 10 C 0.107 3.893 11 C -0.048 4.048 12 C -0.137 4.137 13 C -0.080 4.080 14 C -0.222 4.222 15 C 0.104 3.896 16 O -0.344 6.344 17 C 0.085 3.915 18 C 0.027 3.973 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.979 3.021 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.275 1.275 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.418 0.582 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.343 0.657 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.061 0.939 44 H 0.057 0.943 45 H -0.004 1.004 46 H -0.001 1.001 47 H 0.267 0.733 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.593 7.369 16.895 34.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 N -0.368 5.368 4 C 0.291 3.709 5 O -0.461 6.461 6 C -0.045 4.045 7 H 0.112 0.888 8 C -0.189 4.189 9 N -0.315 5.315 10 C -0.021 4.021 11 C -0.048 4.048 12 C -0.156 4.156 13 C -0.098 4.098 14 C -0.241 4.241 15 C 0.059 3.941 16 O -0.258 6.258 17 C 0.011 3.989 18 C -0.010 4.010 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.802 3.198 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.186 4.186 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.256 0.744 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.163 0.837 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.076 0.924 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -29.076 6.754 17.191 34.446 hybrid contribution 0.997 -0.458 -1.498 1.856 sum -28.079 6.296 15.694 32.777 Atomic orbital electron populations 1.21945 0.91548 1.04165 1.03528 1.21370 0.96444 0.82536 1.01157 1.45925 1.06388 1.09840 1.74606 1.21175 0.82896 0.91904 0.74916 1.90727 1.56635 1.47668 1.51092 1.21643 0.89030 0.91736 1.02136 0.88812 1.21767 1.01488 1.00858 0.94739 1.60537 1.05640 1.04947 1.60371 1.20976 0.88679 0.93572 0.98833 1.19689 0.95956 0.96470 0.92698 1.21199 0.93724 1.02119 0.98510 1.21271 0.94786 0.96447 0.97275 1.21508 1.00877 1.06162 0.95568 1.19495 0.92647 0.94508 0.87480 1.86076 1.21937 1.77552 1.40251 1.22847 0.75694 1.00358 1.00011 1.18976 0.95236 0.94914 0.91849 1.21430 0.91209 1.41609 1.04160 0.91076 1.26077 1.04964 0.94222 0.94554 1.70136 1.37958 1.41177 1.07783 0.85199 0.77732 0.78076 0.78815 1.18090 1.20243 1.20076 1.20457 0.90637 1.06214 1.01248 0.90099 0.90713 0.91001 0.93110 0.92818 0.74437 0.90041 0.89443 0.93049 0.83681 0.87081 0.93472 0.82951 0.83061 0.85598 0.92086 0.92446 0.98525 0.98259 0.92420 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.03 71.98 0.72 0.00 16 2 C 0.11 1.32 6.39 86.38 0.55 1.87 16 3 N -0.71 -8.13 5.45 -463.03 -2.52 -10.66 16 4 C 0.50 9.61 7.18 87.66 0.63 10.24 16 5 O -0.58 -17.55 15.65 -3.05 -0.05 -17.60 16 6 C 0.07 0.93 3.03 44.17 0.13 1.07 16 7 H 0.09 0.89 7.80 -2.39 -0.02 0.87 16 8 C -0.13 -1.12 9.31 71.98 0.67 -0.45 16 9 N -0.68 -13.81 6.17 -499.47 -3.08 -16.89 16 10 C 0.11 1.90 5.61 85.56 0.48 2.38 16 11 C -0.05 -1.18 5.39 -19.88 -0.11 -1.28 16 12 C -0.14 -3.09 9.70 22.28 0.22 -2.87 16 13 C -0.08 -2.00 10.04 22.25 0.22 -1.78 16 14 C -0.22 -7.21 9.04 22.36 0.20 -7.01 16 15 C 0.10 3.90 6.69 22.50 0.15 4.05 16 16 O -0.34 -15.57 10.14 -92.43 -0.94 -16.51 16 17 C 0.09 3.94 4.68 71.98 0.34 4.28 16 18 C 0.03 1.56 5.34 29.85 0.16 1.72 16 19 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 20 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 23 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.17 -5.34 9.64 22.37 0.22 -5.12 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.42 1.64 7.89 -92.71 -0.73 0.90 16 34 H 0.08 0.53 7.45 -2.39 -0.02 0.52 16 35 H 0.09 0.25 7.56 -2.39 -0.02 0.23 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.34 9.11 7.44 -89.69 -0.67 8.45 16 38 H 0.11 1.36 7.38 -2.38 -0.02 1.34 16 39 H 0.05 0.78 8.00 -2.39 -0.02 0.77 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.13 4.06 6.30 -2.91 -0.02 4.04 16 43 H 0.06 2.64 7.67 -2.39 -0.02 2.62 16 44 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 45 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -78.24 398.68 0.56 -77.68 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.44 Total: 19.04 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 5.28 Total: -23.92 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -5.32 Total: -85.13 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.98 Total: -34.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.24 0.56 -77.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338957261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.091 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds