Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00047 * 2 1 4 4 C 1.38758 * 120.05303 * 0.25545 * 3 2 1 5 5 C 1.38128 * 119.93963 * 180.32015 * 4 3 2 6 6 C 1.38286 * 120.05549 * 359.67825 * 5 4 3 7 7 C 1.38250 * 120.11321 * 0.02605 * 6 5 4 8 8 C 1.38163 * 120.05268 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.02544 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46827 * 264.99647 * 9 8 7 11 11 N 1.46505 * 109.47146 * 180.02562 * 10 9 8 12 12 C 1.34768 * 120.00072 * 180.02562 * 11 10 9 13 13 O 1.21273 * 120.00440 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99753 * 179.97438 * 12 11 10 15 15 N 1.46906 * 109.46929 * 179.97438 * 14 12 11 16 16 C 1.46898 * 110.99888 * 66.04676 * 15 14 12 17 17 C 1.46902 * 110.99573 * 190.00042 * 15 14 12 18 18 H 1.09005 * 109.47428 * 55.00152 * 17 15 14 19 19 C 1.52998 * 109.47449 * 294.99873 * 17 15 14 20 20 C 1.50700 * 109.46520 * 174.99924 * 17 15 14 21 21 H 1.07997 * 120.00735 * 359.97438 * 20 17 15 22 22 C 1.37887 * 119.99903 * 179.97438 * 20 17 15 23 23 N 1.31518 * 119.99537 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00159 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46838 * 60.00383 * 24 22 20 26 26 H 1.48502 * 109.46818 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47106 * 300.00065 * 24 22 20 28 28 H 1.09009 * 109.47182 * 299.99726 * 1 2 3 29 29 H 1.08999 * 109.47279 * 59.99812 * 1 2 3 30 30 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.03007 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.96734 * 179.69892 * 5 4 3 33 33 H 1.07993 * 119.94293 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.97308 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46946 * 145.00250 * 9 8 7 36 36 H 1.08992 * 109.46985 * 25.00016 * 9 8 7 37 37 H 1.09001 * 109.47358 * 60.00557 * 10 9 8 38 38 H 1.08992 * 109.47640 * 299.99968 * 10 9 8 39 39 H 0.97005 * 119.99404 * 359.97438 * 11 10 9 40 40 H 1.08998 * 109.46946 * 59.99907 * 14 12 11 41 41 H 1.09000 * 109.47319 * 299.99706 * 14 12 11 42 42 H 1.08997 * 109.47334 * 60.00212 * 16 15 14 43 43 H 1.09000 * 109.46674 * 180.02562 * 16 15 14 44 44 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 45 45 H 1.09005 * 109.47033 * 300.00521 * 19 17 15 46 46 H 1.08995 * 109.47107 * 59.99993 * 19 17 15 47 47 H 1.08999 * 109.47381 * 180.02562 * 19 17 15 48 48 H 0.97005 * 119.99442 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0067 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0221 0.0001 10 6 4.4213 -0.4776 -1.4362 11 7 5.2205 -1.7055 -1.4359 12 6 5.4990 -2.3285 -2.5980 13 8 5.0878 -1.8731 -3.6440 14 6 6.3216 -3.5913 -2.5977 15 7 6.4825 -4.0712 -3.9768 16 6 7.2850 -3.1315 -4.7710 17 6 7.0711 -5.4170 -4.0005 18 1 6.4674 -6.0884 -3.3897 19 6 8.4945 -5.3610 -3.4424 20 6 7.1072 -5.9244 -5.4190 21 1 6.7303 -5.3090 -6.2225 22 6 7.6216 -7.1744 -5.6912 23 7 8.0801 -7.9240 -4.7127 24 14 7.6658 -7.8037 -7.4494 25 1 8.4873 -6.8887 -8.2821 26 1 8.2620 -9.1636 -7.4735 27 1 6.2839 -7.8588 -7.9903 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2128 2.3204 0.0099 32 1 1.3339 4.5114 -0.0021 33 1 3.7922 4.6380 -0.0115 34 1 5.1344 2.5752 -0.0096 35 1 3.7489 -0.7402 0.5934 36 1 5.2340 0.2273 0.4302 37 1 4.9262 0.2847 -2.0296 38 1 3.4411 -0.6828 -1.8663 39 1 5.5498 -2.0696 -0.5992 40 1 5.8166 -4.3537 -2.0046 41 1 7.3019 -3.3863 -2.1673 42 1 8.2719 -3.0256 -4.3205 43 1 7.3881 -3.5109 -5.7876 44 1 6.7902 -2.1606 -4.7943 45 1 9.0981 -4.6896 -4.0531 46 1 8.4683 -4.9940 -2.4164 47 1 8.9314 -6.3595 -3.4604 48 1 8.4423 -8.8033 -4.9042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345843509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = -62.131212 kcal Electronic energy + Delta-G solvation = -26446.290022 eV Core-core repulsion = 22693.938701 eV Total energy + Delta-G solvation = -3752.351321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26043 -40.76533 -38.53340 -38.29169 -36.40277 -34.66757 -33.73279 -31.15682 -30.98987 -29.93061 -28.61119 -27.99089 -27.18207 -25.82676 -24.26581 -23.04309 -22.15845 -21.77822 -20.82621 -18.92013 -18.39243 -17.86897 -17.33176 -17.16199 -16.75673 -16.60150 -16.54205 -16.34426 -15.82765 -15.41934 -15.32899 -15.18081 -14.76639 -14.43245 -14.22575 -14.09727 -13.95455 -13.72960 -13.38376 -12.89774 -12.84854 -12.80757 -12.76824 -12.62972 -12.61320 -12.53776 -12.23015 -12.04862 -12.00068 -11.96355 -11.86182 -11.71821 -10.97774 -10.63889 -10.47176 -10.04198 -9.80202 -9.09043 -8.82513 -8.09928 -6.19327 0.35640 0.50524 1.43306 1.44884 1.52607 1.71789 2.16517 2.40705 2.45613 2.82293 3.19141 3.48770 3.79477 3.87173 3.97042 4.10798 4.19550 4.21223 4.30121 4.37616 4.39715 4.46229 4.46765 4.52058 4.59893 4.64223 4.72262 4.73083 4.76615 4.85327 4.92319 4.93751 5.03321 5.14596 5.18712 5.23957 5.41174 5.51551 5.53819 5.54762 5.62216 5.72179 5.81795 5.88974 6.18202 6.46380 6.48144 6.54970 6.79102 6.92363 7.37340 7.49056 8.95925 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.002108 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.564165 B =13282.439073 C =13584.582177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.218 4.218 5 C -0.087 4.087 6 C -0.163 4.163 7 C -0.083 4.083 8 C -0.134 4.134 9 C -0.069 4.069 10 C 0.137 3.863 11 N -0.718 5.718 12 C 0.516 3.484 13 O -0.566 6.566 14 C 0.037 3.963 15 N -0.539 5.539 16 C 0.043 3.957 17 C 0.215 3.785 18 H 0.014 0.986 19 C -0.159 4.159 20 C -0.518 4.518 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.916 5.916 24 Si 0.957 3.043 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.416 0.584 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.020 0.980 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 22.423 16.704 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.068 3.932 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.181 4.181 7 C -0.101 4.101 8 C -0.135 4.135 9 C -0.106 4.106 10 C 0.013 3.987 11 N -0.373 5.373 12 C 0.303 3.697 13 O -0.444 6.444 14 C -0.095 4.095 15 N -0.263 5.263 16 C -0.105 4.105 17 C 0.109 3.891 18 H 0.032 0.968 19 C -0.218 4.218 20 C -0.556 4.556 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.556 5.556 24 Si 0.783 3.217 25 H -0.199 1.199 26 H -0.206 1.206 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.253 0.747 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.778 22.341 15.771 29.775 hybrid contribution 0.610 -0.672 -0.319 0.962 sum -11.168 21.669 15.452 28.862 Atomic orbital electron populations 1.23280 0.76897 1.05168 1.02106 1.86070 1.23022 1.27096 1.88556 1.19170 0.92315 0.84869 0.96881 1.21506 1.00975 0.92313 1.08844 1.21304 0.95150 0.97542 0.96524 1.21391 0.94182 0.99185 1.03363 1.21221 1.01049 0.90824 0.96957 1.19232 0.90631 0.96074 1.07549 1.20483 1.00656 0.94716 0.94754 1.21152 0.94375 0.85524 0.97674 1.45838 1.55118 1.27206 1.09106 1.20869 0.79953 0.85336 0.83534 1.90627 1.53483 1.67178 1.33097 1.21989 0.99476 0.95012 0.92985 1.61909 1.51436 1.03422 1.09484 1.22206 0.94257 0.95890 0.98159 1.19134 0.90099 0.84201 0.95691 0.96775 1.22209 1.00420 1.02093 0.97098 1.21327 1.39663 1.01125 0.93512 0.93224 1.25627 0.95125 0.96809 1.00937 1.69982 1.42208 1.10811 1.32631 0.85631 0.78245 0.77349 0.80494 1.19871 1.20604 1.20200 0.91282 0.92193 0.87155 0.83983 0.83584 0.83758 0.83661 0.89976 0.88255 0.92684 0.93908 0.74742 0.87604 0.90718 0.96206 0.92990 0.91726 0.95188 0.94522 0.91737 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.68 9.64 -92.46 -0.89 -7.57 16 3 C 0.11 2.19 6.66 22.51 0.15 2.34 16 4 C -0.22 -3.40 9.04 22.37 0.20 -3.20 16 5 C -0.09 -1.16 10.04 22.26 0.22 -0.94 16 6 C -0.16 -2.19 10.04 22.28 0.22 -1.96 16 7 C -0.08 -1.26 9.68 22.25 0.22 -1.04 16 8 C -0.13 -2.46 5.15 -19.77 -0.10 -2.56 16 9 C -0.07 -1.17 5.18 29.85 0.15 -1.01 16 10 C 0.14 3.23 5.66 86.38 0.49 3.72 16 11 N -0.72 -17.49 5.56 -463.08 -2.57 -20.07 16 12 C 0.52 17.69 7.55 87.66 0.66 18.36 16 13 O -0.57 -24.50 14.31 -3.01 -0.04 -24.54 16 14 C 0.04 1.30 4.89 85.56 0.42 1.72 16 15 N -0.54 -24.73 4.48 -906.03 -4.06 -28.78 16 16 C 0.04 1.90 8.44 127.69 1.08 2.97 16 17 C 0.22 11.10 2.34 44.17 0.10 11.20 16 18 H 0.01 0.80 8.03 -2.38 -0.02 0.78 16 19 C -0.16 -7.54 8.28 71.98 0.60 -6.95 16 20 C -0.52 -29.50 7.88 25.60 0.20 -29.30 16 21 H 0.05 2.90 6.77 -2.91 -0.02 2.88 16 22 C 0.01 0.77 5.30 84.66 0.45 1.22 16 23 N -0.92 -52.62 11.32 21.45 0.24 -52.37 16 24 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 H 0.07 0.62 7.65 -2.38 -0.02 0.60 16 29 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.14 1.63 6.30 -2.91 -0.02 1.61 16 32 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.08 1.41 7.70 -2.39 -0.02 1.40 16 36 H 0.10 1.24 8.05 -2.39 -0.02 1.22 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.42 7.12 8.47 -92.70 -0.79 6.34 16 40 H 0.11 3.49 8.00 -2.39 -0.02 3.47 16 41 H 0.08 2.35 6.94 -2.39 -0.02 2.33 16 42 H 0.02 0.81 6.51 -2.39 -0.02 0.79 16 43 H 0.05 2.47 6.42 -2.39 -0.02 2.45 16 44 H 0.06 2.80 5.88 -2.39 -0.01 2.78 16 45 H 0.03 1.39 6.48 -2.38 -0.02 1.37 16 46 H 0.04 1.47 6.75 -2.39 -0.02 1.46 16 47 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 48 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -72.80 382.69 1.06 -71.75 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.18 Total: 18.75 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.18 Total: -4.08 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.39 Total: -101.23 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.93 Total: -32.11 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.80 1.06 -71.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345843509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.614 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds