Wall clock time and date at job start Tue Mar 31 2020 13:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46835 * 2 1 4 4 C 1.46907 * 110.99898 * 63.07474 * 3 2 1 5 5 C 1.50698 * 109.47476 * 66.04163 * 4 3 2 6 6 O 1.21291 * 119.99951 * 5.73932 * 5 4 3 7 7 N 1.34771 * 120.00106 * 185.73724 * 5 4 3 8 8 C 1.46507 * 120.00181 * 184.40141 * 7 5 4 9 9 C 1.50699 * 109.46850 * 270.00217 * 8 7 5 10 10 H 1.08002 * 119.99827 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99985 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99979 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47175 * 59.99330 * 13 11 9 15 15 H 1.48494 * 109.46931 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46702 * 299.99594 * 13 11 9 17 17 C 1.39923 * 120.00175 * 4.40145 * 7 5 4 18 18 C 1.38875 * 120.07313 * 69.34482 * 17 7 5 19 19 C 1.38109 * 119.92848 * 179.97438 * 18 17 7 20 20 C 1.38284 * 120.07554 * 359.97438 * 19 18 17 21 21 C 1.38284 * 120.13794 * 0.03759 * 20 19 18 22 22 C 1.38117 * 120.07054 * 359.95834 * 21 20 19 23 23 C 1.46891 * 111.00137 * 299.11751 * 3 2 1 24 24 C 1.52993 * 109.47233 * 290.98354 * 23 3 2 25 25 H 1.08998 * 109.46919 * 59.76298 * 24 23 3 26 26 C 1.53003 * 109.47476 * 179.76159 * 24 23 3 27 27 O 1.42900 * 109.47248 * 299.76092 * 24 23 3 28 28 H 1.08998 * 109.47318 * 300.65228 * 1 2 3 29 29 H 1.08997 * 109.46759 * 60.65838 * 1 2 3 30 30 H 1.09002 * 109.46551 * 180.65448 * 1 2 3 31 31 H 1.08998 * 109.47229 * 240.00144 * 2 1 3 32 32 H 1.09001 * 109.46960 * 119.99905 * 2 1 3 33 33 H 1.09009 * 109.46789 * 306.04154 * 4 3 2 34 34 H 1.09002 * 109.46928 * 186.04540 * 4 3 2 35 35 H 1.08997 * 109.46930 * 29.99546 * 8 7 5 36 36 H 1.08992 * 109.47388 * 150.00111 * 8 7 5 37 37 H 0.97002 * 119.99982 * 180.02562 * 12 11 9 38 38 H 1.07992 * 120.03055 * 359.71107 * 18 17 7 39 39 H 1.07996 * 119.96137 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.93262 * 179.97438 * 20 19 18 41 41 H 1.07999 * 119.96661 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.03072 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47461 * 50.98775 * 23 3 2 44 44 H 1.09002 * 109.47419 * 170.98458 * 23 3 2 45 45 H 1.08998 * 109.46934 * 60.00148 * 26 24 23 46 46 H 1.08994 * 109.47478 * 180.02562 * 26 24 23 47 47 H 1.08999 * 109.47119 * 300.00378 * 26 24 23 48 48 H 0.96698 * 114.00249 * 299.99650 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6096 2.0883 1.2228 5 6 2.2929 1.4664 2.4133 6 8 3.1254 0.5995 2.2502 7 7 1.9792 1.8735 3.6591 8 6 2.7108 1.3392 4.8105 9 6 2.0190 0.0984 5.3133 10 1 1.1237 -0.2564 4.8245 11 6 2.5285 -0.5833 6.3981 12 7 3.6184 -0.1510 6.9937 13 14 1.6706 -2.1210 7.0219 14 1 1.6344 -3.1401 5.9424 15 1 2.4122 -2.6627 8.1888 16 1 0.2834 -1.7828 7.4300 17 6 0.9546 2.8065 3.8531 18 6 -0.3663 2.4488 3.6165 19 6 -1.3753 3.3720 3.8094 20 6 -1.0716 4.6511 4.2381 21 6 0.2427 5.0105 4.4743 22 6 1.2563 4.0920 4.2834 23 6 1.5660 2.1037 -1.1980 24 6 2.2721 1.5365 -2.4310 25 1 2.0376 0.4765 -2.5285 26 6 1.7951 2.2812 -3.6797 27 8 3.6845 1.7009 -2.2889 28 1 -0.3634 0.5239 0.8840 29 1 -0.3633 0.5036 -0.8958 30 1 -0.3632 -1.0277 0.0117 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5289 2.0096 1.3421 34 1 1.8915 3.1387 1.1497 35 1 3.7290 1.0912 4.5107 36 1 2.7372 2.0869 5.6031 37 1 3.9770 -0.6308 7.7566 38 1 -0.6038 1.4512 3.2780 39 1 -2.4026 3.0945 3.6252 40 1 -1.8624 5.3713 4.3878 41 1 0.4768 6.0104 4.8086 42 1 2.2825 4.3732 4.4684 43 1 0.4884 1.9822 -1.3084 44 1 1.8038 3.1628 -1.0983 45 1 2.0296 3.3412 -3.5822 46 1 2.2979 1.8768 -4.5581 47 1 0.7178 2.1558 -3.7881 48 1 3.9660 2.6214 -2.1972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352218918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:57 Heat of formation + Delta-G solvation = -42.989481 kcal Electronic energy + Delta-G solvation = -28206.786317 eV Core-core repulsion = 24455.265044 eV Total energy + Delta-G solvation = -3751.521273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09671 -38.82610 -37.83696 -36.16405 -34.70282 -32.68816 -31.42720 -30.74809 -30.34850 -29.40075 -28.25032 -26.62833 -25.01933 -23.21819 -22.59330 -22.28913 -21.83896 -20.21747 -18.87896 -17.04151 -16.58771 -16.41855 -16.37294 -15.93159 -15.76684 -15.41336 -14.83818 -14.71274 -14.34614 -14.11759 -14.05714 -13.77126 -13.24781 -13.18824 -12.99913 -12.55979 -12.44039 -12.39713 -12.23326 -12.19737 -11.87887 -11.68045 -11.52026 -11.45224 -11.18054 -11.04527 -10.86386 -10.75848 -10.61211 -10.48776 -10.15148 -10.07039 -9.70858 -9.17006 -8.72914 -8.56372 -8.42470 -8.03822 -7.63869 -6.04440 -4.08713 1.54189 1.61190 3.31693 3.33106 3.36535 3.40793 3.55317 3.99252 4.11148 4.44810 4.49527 4.63462 4.94184 5.01629 5.04227 5.13285 5.14144 5.17225 5.25339 5.30578 5.31630 5.38333 5.39775 5.45922 5.54086 5.57000 5.62367 5.65678 5.78953 5.81199 5.96429 5.99383 6.04141 6.16438 6.22986 6.45532 6.57228 6.69703 6.79715 6.92942 7.11651 7.19204 7.20660 7.38840 7.51103 7.73528 7.90932 8.20318 8.39307 8.88316 9.05330 9.55596 11.03930 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.004471 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.745044 B = 6261.530004 C = 7692.233212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.505 5.505 4 C 0.032 3.968 5 C 0.514 3.486 6 O -0.504 6.504 7 N -0.566 5.566 8 C 0.251 3.749 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.166 3.834 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.125 4.125 23 C 0.018 3.982 24 C 0.108 3.892 25 H 0.096 0.904 26 C -0.184 4.184 27 O -0.547 6.547 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 10.605 -15.267 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.228 5.228 4 C -0.099 4.099 5 C 0.300 3.700 6 O -0.377 6.377 7 N -0.296 5.296 8 C 0.133 3.867 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.203 1.203 17 C 0.074 3.926 18 C -0.144 4.144 19 C -0.130 4.130 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.111 4.111 24 C 0.048 3.952 25 H 0.114 0.886 26 C -0.242 4.242 27 O -0.351 6.351 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.485 9.374 -15.248 19.809 hybrid contribution -1.572 -0.169 0.711 1.734 sum -10.057 9.205 -14.537 19.930 Atomic orbital electron populations 1.22473 0.99001 1.02474 1.01389 1.22339 0.91801 0.89886 1.04522 1.61803 1.59207 1.02028 0.99716 1.22117 0.98832 0.98860 0.90046 1.20185 0.83498 0.82998 0.83275 1.90686 1.32786 1.29480 1.84762 1.46008 1.34365 1.41157 1.08100 1.19387 0.92582 0.93849 0.80860 1.21304 1.11216 1.10034 1.13688 0.92579 1.24896 0.94975 0.97657 0.96375 1.69914 1.21098 1.40176 1.22147 0.86569 0.79435 0.83217 0.78294 1.20138 1.21120 1.20277 1.17747 0.88162 0.88782 0.97893 1.21365 0.91948 0.99434 1.01681 1.20962 0.98627 0.93505 0.99891 1.21048 0.96395 0.96557 1.01326 1.20974 0.92647 0.99190 1.00017 1.21358 0.99953 0.92406 1.00798 1.22941 0.98149 0.98501 0.91500 1.21852 0.81561 1.00309 0.91471 0.88601 1.22498 1.01884 1.00955 0.98909 1.86646 1.21159 1.31483 1.95786 0.92560 0.92849 0.91894 0.90727 0.88442 0.91946 0.88837 0.93509 0.94851 0.92628 0.86184 0.86262 0.86431 0.86112 0.85757 0.93588 0.90812 0.92313 0.91677 0.91825 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 9.26 37.16 0.34 -2.07 16 2 C 0.04 0.64 5.53 -3.82 -0.02 0.62 16 3 N -0.50 -7.53 4.26 -236.07 -1.01 -8.54 16 4 C 0.03 0.51 4.16 -4.97 -0.02 0.49 16 5 C 0.51 10.77 7.13 -10.99 -0.08 10.69 16 6 O -0.50 -12.67 14.25 5.55 0.08 -12.59 16 7 N -0.57 -12.19 2.50 -114.74 -0.29 -12.47 16 8 C 0.25 6.61 5.08 -5.19 -0.03 6.58 16 9 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.17 2.99 4.39 -83.69 -0.37 2.62 16 18 C -0.12 -1.99 8.33 -39.39 -0.33 -2.32 16 19 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 20 C -0.13 -1.62 10.04 -39.55 -0.40 -2.02 16 21 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 22 C -0.13 -1.98 9.75 -39.39 -0.38 -2.36 16 23 C 0.02 0.19 4.44 -3.83 -0.02 0.17 16 24 C 0.11 1.12 3.53 -26.73 -0.09 1.02 16 25 H 0.10 1.07 6.62 -51.93 -0.34 0.73 16 26 C -0.18 -1.39 9.53 37.16 0.35 -1.03 16 27 O -0.55 -6.84 13.21 -35.23 -0.47 -7.31 16 28 H 0.06 0.74 6.31 -51.93 -0.33 0.42 16 29 H 0.05 0.56 6.27 -51.93 -0.33 0.23 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 32 H 0.10 1.87 6.04 -51.93 -0.31 1.56 16 33 H 0.06 0.91 4.52 -51.92 -0.23 0.67 16 34 H 0.09 1.33 7.89 -51.93 -0.41 0.92 16 35 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 36 H 0.03 0.90 7.90 -51.93 -0.41 0.49 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.12 1.95 8.02 -52.49 -0.42 1.53 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 43 H 0.05 0.46 5.91 -51.93 -0.31 0.15 16 44 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.37 3.38 9.05 45.56 0.41 3.80 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -33.83 385.82 -9.15 -42.97 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.75 Total: 5.82 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.25 Total: -4.78 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.56 Total: -47.00 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.39 Total: -19.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.83 -9.15 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352218918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.017 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds