Wall clock time and date at job start Tue Mar 31 2020 13:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46835 * 2 1 4 4 C 1.46907 * 110.99898 * 63.07474 * 3 2 1 5 5 C 1.50698 * 109.47476 * 66.04163 * 4 3 2 6 6 O 1.21291 * 119.99951 * 5.73932 * 5 4 3 7 7 N 1.34771 * 120.00106 * 185.73724 * 5 4 3 8 8 C 1.46507 * 120.00181 * 184.40141 * 7 5 4 9 9 C 1.50699 * 109.46850 * 270.00217 * 8 7 5 10 10 H 1.08002 * 119.99827 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99985 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99979 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47175 * 59.99330 * 13 11 9 15 15 H 1.48494 * 109.46931 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46702 * 299.99594 * 13 11 9 17 17 C 1.39923 * 120.00175 * 4.40145 * 7 5 4 18 18 C 1.38875 * 120.07313 * 69.34482 * 17 7 5 19 19 C 1.38109 * 119.92848 * 179.97438 * 18 17 7 20 20 C 1.38284 * 120.07554 * 359.97438 * 19 18 17 21 21 C 1.38284 * 120.13794 * 0.03759 * 20 19 18 22 22 C 1.38117 * 120.07054 * 359.95834 * 21 20 19 23 23 C 1.46891 * 111.00137 * 299.11751 * 3 2 1 24 24 C 1.52993 * 109.47233 * 290.98354 * 23 3 2 25 25 H 1.08998 * 109.46919 * 59.76298 * 24 23 3 26 26 C 1.53003 * 109.47476 * 179.76159 * 24 23 3 27 27 O 1.42900 * 109.47248 * 299.76092 * 24 23 3 28 28 H 1.08998 * 109.47318 * 300.65228 * 1 2 3 29 29 H 1.08997 * 109.46759 * 60.65838 * 1 2 3 30 30 H 1.09002 * 109.46551 * 180.65448 * 1 2 3 31 31 H 1.08998 * 109.47229 * 240.00144 * 2 1 3 32 32 H 1.09001 * 109.46960 * 119.99905 * 2 1 3 33 33 H 1.09009 * 109.46789 * 306.04154 * 4 3 2 34 34 H 1.09002 * 109.46928 * 186.04540 * 4 3 2 35 35 H 1.08997 * 109.46930 * 29.99546 * 8 7 5 36 36 H 1.08992 * 109.47388 * 150.00111 * 8 7 5 37 37 H 0.97002 * 119.99982 * 180.02562 * 12 11 9 38 38 H 1.07992 * 120.03055 * 359.71107 * 18 17 7 39 39 H 1.07996 * 119.96137 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.93262 * 179.97438 * 20 19 18 41 41 H 1.07999 * 119.96661 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.03072 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47461 * 50.98775 * 23 3 2 44 44 H 1.09002 * 109.47419 * 170.98458 * 23 3 2 45 45 H 1.08998 * 109.46934 * 60.00148 * 26 24 23 46 46 H 1.08994 * 109.47478 * 180.02562 * 26 24 23 47 47 H 1.08999 * 109.47119 * 300.00378 * 26 24 23 48 48 H 0.96698 * 114.00249 * 299.99650 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6096 2.0883 1.2228 5 6 2.2929 1.4664 2.4133 6 8 3.1254 0.5995 2.2502 7 7 1.9792 1.8735 3.6591 8 6 2.7108 1.3392 4.8105 9 6 2.0190 0.0984 5.3133 10 1 1.1237 -0.2564 4.8245 11 6 2.5285 -0.5833 6.3981 12 7 3.6184 -0.1510 6.9937 13 14 1.6706 -2.1210 7.0219 14 1 1.6344 -3.1401 5.9424 15 1 2.4122 -2.6627 8.1888 16 1 0.2834 -1.7828 7.4300 17 6 0.9546 2.8065 3.8531 18 6 -0.3663 2.4488 3.6165 19 6 -1.3753 3.3720 3.8094 20 6 -1.0716 4.6511 4.2381 21 6 0.2427 5.0105 4.4743 22 6 1.2563 4.0920 4.2834 23 6 1.5660 2.1037 -1.1980 24 6 2.2721 1.5365 -2.4310 25 1 2.0376 0.4765 -2.5285 26 6 1.7951 2.2812 -3.6797 27 8 3.6845 1.7009 -2.2889 28 1 -0.3634 0.5239 0.8840 29 1 -0.3633 0.5036 -0.8958 30 1 -0.3632 -1.0277 0.0117 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5289 2.0096 1.3421 34 1 1.8915 3.1387 1.1497 35 1 3.7290 1.0912 4.5107 36 1 2.7372 2.0869 5.6031 37 1 3.9770 -0.6308 7.7566 38 1 -0.6038 1.4512 3.2780 39 1 -2.4026 3.0945 3.6252 40 1 -1.8624 5.3713 4.3878 41 1 0.4768 6.0104 4.8086 42 1 2.2825 4.3732 4.4684 43 1 0.4884 1.9822 -1.3084 44 1 1.8038 3.1628 -1.0983 45 1 2.0296 3.3412 -3.5822 46 1 2.2979 1.8768 -4.5581 47 1 0.7178 2.1558 -3.7881 48 1 3.9660 2.6214 -2.1972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352218918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:56 Heat of formation + Delta-G solvation = -67.259975 kcal Electronic energy + Delta-G solvation = -28207.838765 eV Core-core repulsion = 24455.265044 eV Total energy + Delta-G solvation = -3752.573721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54217 -39.92507 -39.09768 -37.26403 -36.35639 -34.79689 -32.28196 -31.88418 -31.56008 -30.84219 -29.60134 -28.18181 -26.13198 -24.95802 -23.87621 -23.39114 -23.04958 -21.30999 -20.28914 -18.73894 -18.37086 -17.70855 -17.40836 -17.10001 -16.98820 -16.84093 -16.24484 -16.10737 -15.61750 -15.45482 -15.20184 -14.91393 -14.59773 -14.36637 -14.29228 -14.10058 -13.71520 -13.57494 -13.39903 -13.22191 -13.16612 -12.96419 -12.84987 -12.69117 -12.66091 -12.49958 -12.44031 -12.16010 -12.10485 -11.80456 -11.69900 -11.51115 -11.02226 -10.70055 -10.64876 -10.03893 -9.83207 -9.32806 -9.05530 -8.25560 -6.40325 0.37565 0.50646 1.32119 1.36912 1.44006 1.74044 2.09958 2.36361 2.85877 2.94129 3.04004 3.62381 3.69227 3.80187 4.01390 4.09742 4.12739 4.14650 4.23208 4.29398 4.32599 4.35611 4.41415 4.44012 4.60362 4.60570 4.62686 4.67559 4.76773 4.91854 4.95642 4.99617 5.04789 5.10253 5.15911 5.21025 5.26605 5.31519 5.43480 5.54929 5.63138 5.67408 5.78961 5.93719 6.00348 6.09094 6.15652 6.65404 6.77813 7.00350 7.24425 7.43279 8.81520 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.004471 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.745044 B = 6261.530004 C = 7692.233212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 N -0.527 5.527 4 C 0.054 3.946 5 C 0.504 3.496 6 O -0.561 6.561 7 N -0.568 5.568 8 C 0.269 3.731 9 C -0.539 4.539 10 H 0.049 0.951 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.966 3.034 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.261 1.261 17 C 0.127 3.873 18 C -0.136 4.136 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.140 4.140 23 C 0.021 3.979 24 C 0.106 3.894 25 H 0.083 0.917 26 C -0.174 4.174 27 O -0.575 6.575 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.000 1.000 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 12.652 -16.265 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.082 4.082 3 N -0.251 5.251 4 C -0.077 4.077 5 C 0.294 3.706 6 O -0.439 6.439 7 N -0.297 5.297 8 C 0.149 3.851 9 C -0.577 4.577 10 H 0.068 0.932 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.186 1.186 17 C 0.036 3.964 18 C -0.156 4.156 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.160 4.160 23 C -0.107 4.107 24 C 0.047 3.953 25 H 0.101 0.899 26 C -0.232 4.232 27 O -0.382 6.382 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.019 0.981 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.327 11.476 -16.263 23.412 hybrid contribution -0.390 -0.703 1.021 1.299 sum -12.716 10.773 -15.242 22.585 Atomic orbital electron populations 1.22370 0.96527 1.03124 1.02243 1.22151 0.93802 0.90044 1.02236 1.61726 1.60452 1.02150 1.00733 1.21928 0.98824 0.98927 0.87997 1.21239 0.82802 0.82210 0.84391 1.90647 1.35431 1.32132 1.85662 1.45824 1.34963 1.41856 1.07036 1.18761 0.90934 0.93213 0.82163 1.21544 1.11172 1.11000 1.14022 0.93235 1.25826 0.95637 1.00949 0.96493 1.70038 1.22407 1.41645 1.22603 0.85497 0.79009 0.78789 0.77729 1.20249 1.20004 1.18566 1.18009 0.87971 0.88990 1.01416 1.21356 0.91765 0.99844 1.02617 1.21328 0.99221 0.93219 0.98364 1.21550 0.96902 0.96683 0.98498 1.21343 0.92335 0.99786 0.98562 1.21419 1.00623 0.92420 1.01526 1.23048 0.99206 0.98820 0.89587 1.21932 0.80643 1.00160 0.92602 0.89890 1.22388 1.02655 1.01187 0.96943 1.86606 1.22681 1.32920 1.95979 0.93467 0.89967 0.91431 0.90203 0.93534 0.90276 0.87023 0.98150 0.96289 0.92314 0.87423 0.83014 0.82230 0.82929 0.86886 0.91656 0.89193 0.91011 0.91861 0.90306 0.76931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 9.26 71.98 0.67 -3.74 16 2 C 0.05 1.43 5.53 86.31 0.48 1.91 16 3 N -0.53 -15.85 4.26 -900.79 -3.84 -19.68 16 4 C 0.05 1.71 4.16 85.56 0.36 2.07 16 5 C 0.50 22.63 7.13 87.66 0.63 23.26 16 6 O -0.56 -30.85 14.25 -3.06 -0.04 -30.90 16 7 N -0.57 -26.11 2.50 -635.31 -1.59 -27.70 16 8 C 0.27 15.34 5.08 85.63 0.44 15.78 16 9 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.60 5.46 84.65 0.46 1.06 16 12 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 13 Si 0.97 46.30 29.54 68.60 2.03 48.33 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 C 0.13 4.64 4.39 38.15 0.17 4.80 16 18 C -0.14 -4.23 8.33 22.39 0.19 -4.04 16 19 C -0.10 -2.29 10.04 22.25 0.22 -2.07 16 20 C -0.12 -2.27 10.04 22.29 0.22 -2.04 16 21 C -0.10 -2.28 10.04 22.25 0.22 -2.06 16 22 C -0.14 -4.38 9.75 22.39 0.22 -4.17 16 23 C 0.02 0.41 4.44 86.30 0.38 0.79 16 24 C 0.11 2.06 3.53 30.59 0.11 2.16 16 25 H 0.08 1.80 6.62 -2.39 -0.02 1.78 16 26 C -0.17 -2.15 9.53 71.98 0.69 -1.47 16 27 O -0.58 -14.28 13.21 -148.98 -1.97 -16.24 16 28 H 0.05 1.21 6.31 -2.39 -0.02 1.19 16 29 H 0.08 1.48 6.27 -2.39 -0.01 1.47 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.35 6.54 -2.39 -0.02 2.34 16 32 H 0.05 1.94 6.04 -2.39 -0.01 1.93 16 33 H 0.08 2.25 4.52 -2.38 -0.01 2.24 16 34 H 0.11 3.11 7.89 -2.39 -0.02 3.09 16 35 H 0.00 0.03 7.49 -2.39 -0.02 0.01 16 36 H 0.02 1.11 7.90 -2.39 -0.02 1.10 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.11 3.53 8.02 -2.91 -0.02 3.51 16 39 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 43 H 0.07 1.06 5.91 -2.39 -0.01 1.05 16 44 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.38 6.79 9.05 -74.06 -0.67 6.12 16 Total: -1.00 -80.77 385.82 0.85 -79.93 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.29 Total: 23.53 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.68 Total: 0.10 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.14 Total: -104.75 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -2.01 Total: -47.14 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -80.77 0.85 -79.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352218918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.667 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds