Wall clock time and date at job start Tue Mar 31 2020 12:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00011 * 2 1 4 4 H 1.08998 * 109.46672 * 330.00127 * 3 2 1 5 5 C 1.52998 * 109.46933 * 89.99623 * 3 2 1 6 6 C 1.53001 * 109.47138 * 209.99793 * 3 2 1 7 7 N 1.46900 * 109.47144 * 61.21816 * 6 3 2 8 8 C 1.46901 * 110.99866 * 198.47148 * 7 6 3 9 9 C 1.46896 * 111.00255 * 74.51197 * 7 6 3 10 10 C 1.50699 * 109.47399 * 189.99966 * 9 7 6 11 11 O 1.21289 * 119.99933 * 5.79302 * 10 9 7 12 12 N 1.34772 * 120.00262 * 185.78888 * 10 9 7 13 13 C 1.46497 * 120.00074 * 185.28619 * 12 10 9 14 14 C 1.50698 * 109.46925 * 90.00121 * 13 12 10 15 15 H 1.07996 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00177 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00212 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47163 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46761 * 120.00466 * 18 16 14 21 21 H 1.48499 * 109.47035 * 240.00501 * 18 16 14 22 22 C 1.39927 * 120.00128 * 5.29060 * 12 10 9 23 23 C 1.38877 * 120.06755 * 289.69914 * 22 12 10 24 24 C 1.38110 * 119.92773 * 179.74489 * 23 22 12 25 25 C 1.38287 * 120.07002 * 0.52862 * 24 23 22 26 26 C 1.38281 * 120.13941 * 359.74458 * 25 24 23 27 27 C 1.38113 * 120.07392 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47690 * 299.99955 * 1 2 3 29 29 H 1.08998 * 109.47175 * 60.00329 * 1 2 3 30 30 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47134 * 60.00415 * 5 3 2 32 32 H 1.08997 * 109.47133 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47917 * 300.00310 * 5 3 2 34 34 H 1.09004 * 109.47035 * 301.21327 * 6 3 2 35 35 H 1.08998 * 109.46634 * 181.21720 * 6 3 2 36 36 H 1.09000 * 109.46623 * 300.62692 * 8 7 6 37 37 H 1.08995 * 109.47225 * 60.62478 * 8 7 6 38 38 H 1.08998 * 109.46779 * 180.63324 * 8 7 6 39 39 H 1.09001 * 109.47431 * 310.00112 * 9 7 6 40 40 H 1.08997 * 109.46944 * 69.99969 * 9 7 6 41 41 H 1.08999 * 109.47030 * 210.00194 * 13 12 10 42 42 H 1.09001 * 109.47325 * 330.00638 * 13 12 10 43 43 H 0.97000 * 120.00120 * 179.97438 * 17 16 14 44 44 H 1.07994 * 120.03727 * 0.02562 * 23 22 12 45 45 H 1.07999 * 119.96772 * 180.27144 * 24 23 22 46 46 H 1.08001 * 119.93122 * 179.72093 * 25 24 23 47 47 H 1.08001 * 119.96277 * 180.02562 * 26 25 24 48 48 H 1.07998 * 120.04033 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2175 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 7 3.1563 0.8440 -2.1144 8 6 4.4132 0.3717 -2.7102 9 6 2.5715 1.9305 -2.9115 10 6 2.1522 1.3970 -4.2571 11 8 2.2262 0.2086 -4.4881 12 7 1.6951 2.2403 -5.2038 13 6 1.1793 1.7113 -6.4688 14 6 -0.3002 1.4552 -6.3401 15 1 -0.8057 1.6658 -5.4093 16 6 -1.0086 0.9529 -7.4110 17 7 -0.3931 0.6968 -8.5447 18 14 -2.8424 0.6348 -7.2513 19 1 -3.2913 1.0023 -5.8844 20 1 -3.5756 1.4538 -8.2496 21 1 -3.1181 -0.8042 -7.4931 22 6 1.7133 3.6212 -4.9785 23 6 0.8466 4.1865 -4.0523 24 6 0.8706 5.5492 -3.8284 25 6 1.7488 6.3518 -4.5332 26 6 2.6091 5.7926 -5.4603 27 6 2.5941 4.4299 -5.6847 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8828 1.0775 1.9564 32 1 2.6613 2.7670 1.4425 33 1 1.2568 1.8015 1.9564 34 1 4.0169 0.5533 -0.2200 35 1 3.8121 2.2544 -0.7023 36 1 5.1526 1.1720 -2.6805 37 1 4.7827 -0.4853 -2.1471 38 1 4.2370 0.0781 -3.7450 39 1 1.7013 2.3336 -2.3933 40 1 3.3109 2.7196 -3.0479 41 1 1.3549 2.4357 -7.2641 42 1 1.6900 0.7784 -6.7077 43 1 -0.8914 0.3431 -9.2980 44 1 0.1578 3.5608 -3.5043 45 1 0.2000 5.9889 -3.1050 46 1 1.7626 7.4177 -4.3596 47 1 3.2941 6.4221 -6.0089 48 1 3.2659 3.9939 -6.4091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353259067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:21 Heat of formation + Delta-G solvation = -57.929532 kcal Electronic energy + Delta-G solvation = -28231.032402 eV Core-core repulsion = 24478.863279 eV Total energy + Delta-G solvation = -3752.169123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50283 -39.82974 -39.24478 -37.47448 -36.37620 -34.79883 -32.89305 -31.87665 -30.99315 -30.08366 -28.44174 -28.09206 -27.29949 -25.14699 -23.98525 -23.38101 -23.22794 -21.81579 -20.42267 -18.77542 -18.56332 -17.72515 -17.50653 -17.08803 -16.88825 -16.47811 -16.26340 -16.21454 -15.73508 -15.58847 -15.09825 -14.95659 -14.80695 -14.39025 -14.28037 -14.14274 -13.79890 -13.57607 -13.43239 -13.34996 -13.14185 -13.00576 -12.93773 -12.80054 -12.69622 -12.51879 -12.44473 -12.26041 -12.12010 -12.10696 -11.71240 -11.45775 -10.85840 -10.69053 -10.46599 -10.03267 -9.83089 -9.29263 -9.20256 -8.26431 -6.41252 0.37094 0.50290 1.32747 1.35484 1.46940 1.69900 2.08769 2.36287 2.84582 2.91035 2.97489 3.03496 3.59233 3.88870 4.02643 4.10686 4.12919 4.14258 4.20572 4.31643 4.33919 4.42531 4.47076 4.53088 4.60506 4.60853 4.61640 4.66738 4.74355 4.77318 4.83085 4.90439 4.98913 5.04628 5.04875 5.11132 5.15882 5.31118 5.43007 5.54370 5.62575 5.67171 5.76949 5.88310 5.99460 6.07974 6.10416 6.41167 6.65184 6.75283 7.23207 7.40075 8.81251 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.004924 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.624530 B = 5684.888385 C = 6969.926621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.081 3.919 4 H 0.054 0.946 5 C -0.164 4.164 6 C 0.059 3.941 7 N -0.542 5.542 8 C 0.030 3.970 9 C 0.060 3.940 10 C 0.506 3.494 11 O -0.561 6.561 12 N -0.568 5.568 13 C 0.268 3.732 14 C -0.540 4.540 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.279 1.279 22 C 0.124 3.876 23 C -0.135 4.135 24 C -0.102 4.102 25 C -0.118 4.118 26 C -0.103 4.103 27 C -0.142 4.142 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.018 0.982 42 H 0.003 0.997 43 H 0.268 0.732 44 H 0.112 0.888 45 H 0.155 0.845 46 H 0.161 0.839 47 H 0.152 0.848 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 13.075 18.377 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.023 3.977 4 H 0.072 0.928 5 C -0.222 4.222 6 C -0.068 4.068 7 N -0.266 5.266 8 C -0.118 4.118 9 C -0.071 4.071 10 C 0.295 3.705 11 O -0.439 6.439 12 N -0.296 5.296 13 C 0.148 3.852 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.205 1.205 22 C 0.033 3.967 23 C -0.154 4.154 24 C -0.120 4.120 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.161 4.161 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.130 0.870 45 H 0.172 0.828 46 H 0.178 0.822 47 H 0.170 0.830 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.442 11.772 18.060 22.500 hybrid contribution -0.675 -0.126 -0.905 1.136 sum 5.767 11.646 17.155 21.521 Atomic orbital electron populations 1.22769 0.80922 1.02922 0.99728 1.87928 1.19969 1.28418 1.95091 1.22323 0.94371 0.84582 0.96388 0.92840 1.22191 1.02941 1.02442 0.94641 1.22385 0.96769 1.01076 0.86569 1.61459 1.27888 1.34965 1.02295 1.22369 0.89012 1.00136 1.00247 1.21891 1.01393 0.93106 0.90705 1.21168 0.76844 0.85960 0.86493 1.90632 1.54867 1.17535 1.80881 1.45805 1.61002 1.04778 1.18064 1.18783 0.93302 0.93096 0.80049 1.21621 0.94057 1.43715 0.98414 0.93039 1.25844 1.03818 0.94670 0.94606 1.70057 1.38142 1.45045 1.03455 0.85367 0.78880 0.78017 0.78588 1.19058 1.19285 1.20509 1.18033 0.97210 0.82750 0.98696 1.21406 0.97587 0.96782 0.99674 1.21356 0.99063 0.91569 1.00009 1.21563 0.95138 1.01388 0.95502 1.21332 0.99658 0.92947 0.98227 1.21398 0.98861 0.95338 1.00523 0.92246 0.95715 0.89757 0.91584 0.89667 0.91845 0.89126 0.90858 0.94133 0.90297 0.93498 0.87491 0.90846 0.96412 0.97894 0.92318 0.87015 0.82756 0.82178 0.83038 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.82 113.37 1.23 2.05 16 2 O -0.39 -11.41 10.23 -148.98 -1.52 -12.93 16 3 C 0.08 1.83 2.77 30.59 0.08 1.91 16 4 H 0.05 1.22 6.33 -2.39 -0.02 1.21 16 5 C -0.16 -2.50 9.53 71.98 0.69 -1.81 16 6 C 0.06 1.34 4.68 86.30 0.40 1.74 16 7 N -0.54 -17.16 4.29 -927.07 -3.98 -21.14 16 8 C 0.03 0.92 9.17 127.69 1.17 2.09 16 9 C 0.06 1.97 3.85 85.56 0.33 2.30 16 10 C 0.51 22.90 7.15 87.66 0.63 23.52 16 11 O -0.56 -30.73 14.19 -3.06 -0.04 -30.78 16 12 N -0.57 -26.19 2.50 -635.31 -1.59 -27.78 16 13 C 0.27 15.23 5.16 85.63 0.44 15.67 16 14 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.57 5.46 84.66 0.46 1.03 16 17 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 18 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 C 0.12 4.55 4.30 38.15 0.16 4.71 16 23 C -0.13 -4.14 8.58 22.39 0.19 -3.95 16 24 C -0.10 -2.22 10.04 22.25 0.22 -2.00 16 25 C -0.12 -2.25 10.04 22.29 0.22 -2.03 16 26 C -0.10 -2.35 10.04 22.25 0.22 -2.12 16 27 C -0.14 -4.49 9.77 22.39 0.22 -4.27 16 28 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 29 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.91 7.87 -2.39 -0.02 0.89 16 34 H 0.09 1.93 7.92 -2.39 -0.02 1.91 16 35 H 0.07 1.28 8.02 -2.39 -0.02 1.26 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.08 2.15 8.09 -2.39 -0.02 2.14 16 38 H 0.05 1.80 6.02 -2.39 -0.01 1.78 16 39 H 0.11 3.24 5.57 -2.39 -0.01 3.23 16 40 H 0.07 2.11 7.82 -2.39 -0.02 2.09 16 41 H 0.02 1.04 7.92 -2.39 -0.02 1.03 16 42 H 0.00 0.19 7.36 -2.39 -0.02 0.18 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.11 3.58 7.78 -2.91 -0.02 3.55 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 48 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -79.34 393.68 3.02 -76.33 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.92 Total: 18.56 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.92 Total: 6.81 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -5.28 Total: -106.04 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.57 Total: -43.71 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.34 3.02 -76.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.396 kcal (2) G-P(sol) polarization free energy of solvation -79.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds