Wall clock time and date at job start Tue Mar 31 2020 13:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47567 * 2 1 4 4 C 1.36939 * 119.99911 * 271.27254 * 3 2 1 5 5 H 1.07999 * 120.00007 * 8.89692 * 4 3 2 6 6 C 1.38806 * 120.00026 * 188.90068 * 4 3 2 7 7 N 1.31614 * 120.00129 * 26.68618 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 206.69564 * 6 4 3 9 9 H 1.48499 * 109.47202 * 59.99505 * 8 6 4 10 10 H 1.48504 * 109.47466 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46878 * 299.99599 * 8 6 4 12 12 C 1.46500 * 119.99968 * 91.26946 * 3 2 1 13 13 C 1.50700 * 109.47179 * 90.00274 * 12 3 2 14 14 O 1.21286 * 119.99731 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00256 * 179.97438 * 13 12 3 16 16 C 1.46503 * 119.99860 * 0.02562 * 15 13 12 17 17 C 1.46501 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47289 * 0.51402 * 17 15 13 19 19 C 1.53003 * 109.46553 * 120.50560 * 17 15 13 20 20 C 1.50697 * 109.47680 * 240.50518 * 17 15 13 21 21 C 1.38165 * 120.03141 * 256.31849 * 20 17 15 22 22 C 1.38240 * 120.05578 * 180.02562 * 21 20 17 23 23 C 1.38293 * 120.11460 * 0.02562 * 22 21 20 24 24 C 1.38120 * 120.05198 * 359.97438 * 23 22 21 25 25 C 1.38712 * 120.02539 * 76.33587 * 20 17 15 26 26 O 1.35905 * 120.05588 * 359.95580 * 25 20 17 27 27 C 1.42895 * 116.99985 * 179.97438 * 26 25 20 28 28 H 1.08999 * 109.47303 * 300.00455 * 1 2 3 29 29 H 1.09009 * 109.46817 * 59.99867 * 1 2 3 30 30 H 1.09001 * 109.47528 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47303 * 239.99545 * 2 1 3 32 32 H 1.09009 * 109.46817 * 120.00133 * 2 1 3 33 33 H 0.97008 * 119.99782 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47400 * 330.00080 * 12 3 2 35 35 H 1.09001 * 109.46634 * 209.99975 * 12 3 2 36 36 H 1.08993 * 109.46904 * 275.19799 * 16 15 13 37 37 H 1.08997 * 109.47045 * 35.19921 * 16 15 13 38 38 H 1.09000 * 109.46967 * 155.19475 * 16 15 13 39 39 H 1.09003 * 109.47363 * 60.00462 * 19 17 15 40 40 H 1.09002 * 109.47098 * 180.02562 * 19 17 15 41 41 H 1.08998 * 109.47511 * 300.00157 * 19 17 15 42 42 H 1.07996 * 119.96913 * 359.74165 * 21 20 17 43 43 H 1.08002 * 119.94200 * 179.97438 * 22 21 20 44 44 H 1.07996 * 119.97351 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.02714 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.47546 * 300.00250 * 27 26 25 47 47 H 1.09001 * 109.47236 * 60.00137 * 27 26 25 48 48 H 1.08999 * 109.47243 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2219 2.0355 -1.1856 5 1 1.8893 1.5906 -2.1119 6 6 2.8556 3.2703 -1.1970 7 7 3.7028 3.5841 -0.2399 8 14 2.5059 4.4870 -2.5707 9 1 1.0600 4.8257 -2.5758 10 1 3.3022 5.7215 -2.3533 11 1 2.8770 3.8813 -3.8748 12 6 2.2891 2.0624 1.2684 13 6 3.7212 1.8224 1.6718 14 8 4.4443 1.1483 0.9692 15 7 4.1983 2.3569 2.8133 16 6 3.3247 3.1707 3.6623 17 6 5.5903 2.1232 3.2058 18 1 6.0818 1.5075 2.4524 19 6 6.3188 3.4635 3.3235 20 6 5.6253 1.4140 4.5350 21 6 5.9423 2.1133 5.6837 22 6 5.9750 1.4632 6.9032 23 6 5.6913 0.1117 6.9769 24 6 5.3739 -0.5919 5.8315 25 6 5.3396 0.0585 4.6063 26 8 5.0271 -0.6315 3.4779 27 6 4.7449 -2.0244 3.6265 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 4.1454 4.4473 -0.2477 34 1 1.6243 1.6727 2.0393 35 1 2.1196 3.1325 1.1494 36 1 3.3224 4.1990 3.3011 37 1 2.3110 2.7715 3.6288 38 1 3.6907 3.1469 4.6887 39 1 5.8275 4.0792 4.0768 40 1 7.3546 3.2896 3.6150 41 1 6.2936 3.9764 2.3621 42 1 6.1691 3.1677 5.6281 43 1 6.2234 2.0116 7.7999 44 1 5.7172 -0.3938 7.9309 45 1 5.1520 -1.6472 5.8895 46 1 5.6153 -2.5287 4.0465 47 1 3.8930 -2.1534 4.2941 48 1 4.5117 -2.4538 2.6522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355673643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:07 Heat of formation + Delta-G solvation = -24.713270 kcal Electronic energy + Delta-G solvation = -29135.863687 eV Core-core repulsion = 25385.134930 eV Total energy + Delta-G solvation = -3750.728757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38781 -40.05864 -38.45777 -37.44204 -36.24195 -33.76756 -33.43878 -31.04483 -30.88754 -30.14522 -28.39950 -28.03020 -27.40747 -25.56093 -24.61576 -22.80480 -22.53672 -21.55576 -19.90385 -18.92058 -18.48902 -17.71903 -17.21946 -16.92983 -16.71863 -16.56409 -16.10742 -15.80971 -15.44308 -15.32586 -15.22195 -14.82944 -14.34045 -14.18260 -14.06619 -13.67648 -13.48148 -13.33687 -13.22505 -13.10506 -12.94467 -12.84602 -12.75533 -12.71115 -12.63275 -12.50606 -12.29785 -12.00438 -11.94778 -11.74783 -11.72346 -11.59368 -11.58199 -10.61885 -10.12220 -9.75314 -9.16428 -9.00088 -8.76701 -7.81732 -5.07651 0.39854 0.57488 1.48256 1.49791 1.57165 2.48376 2.51558 2.55027 2.71240 3.03946 3.31376 3.68555 3.74156 3.93760 4.13683 4.22611 4.29702 4.33471 4.37691 4.39465 4.42143 4.51442 4.57237 4.60265 4.65289 4.66526 4.77298 4.77651 4.78829 4.86162 4.94671 4.98685 5.05107 5.12856 5.18986 5.25166 5.26454 5.30259 5.52740 5.58581 5.60607 5.65995 5.69492 5.98115 6.15400 6.30935 6.60075 6.99928 7.21290 7.87820 8.18620 8.34323 9.24506 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.004663 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.983654 B = 6003.137224 C = 7073.589566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.144 3.856 3 N -0.592 5.592 4 C -0.260 4.260 5 H 0.069 0.931 6 C -0.047 4.047 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.288 1.288 12 C 0.172 3.828 13 C 0.540 3.460 14 O -0.575 6.575 15 N -0.617 5.617 16 C 0.093 3.907 17 C 0.193 3.807 18 H 0.051 0.949 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.158 4.158 23 C -0.080 4.080 24 C -0.218 4.218 25 C 0.116 3.884 26 O -0.334 6.334 27 C 0.026 3.974 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.141 0.859 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -4.922 19.147 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.087 0.913 6 C -0.242 4.242 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.215 1.215 12 C 0.042 3.958 13 C 0.329 3.671 14 O -0.453 6.453 15 N -0.353 5.353 16 C -0.050 4.050 17 C 0.089 3.911 18 H 0.069 0.931 19 C -0.203 4.203 20 C -0.143 4.143 21 C -0.095 4.095 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.237 4.237 25 C 0.070 3.930 26 O -0.247 6.247 27 C -0.069 4.069 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.158 0.842 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.619 -5.109 18.515 19.275 hybrid contribution 0.231 0.438 -1.249 1.343 sum 1.849 -4.671 17.266 17.982 Atomic orbital electron populations 1.22118 0.96345 1.01097 1.01168 1.20822 0.94093 0.84862 0.98379 1.44169 1.74594 1.10706 1.01848 1.19361 1.32347 1.00289 0.87024 0.91345 1.25321 0.97416 1.00908 1.00578 1.70150 1.26974 1.21299 1.36949 0.85466 0.77670 0.78762 0.79278 1.20396 1.22301 1.21507 1.20578 0.90301 0.98362 0.86524 1.21798 0.91555 0.75911 0.77880 1.90446 1.60507 1.42108 1.52191 1.47982 1.10808 1.53206 1.23299 1.21583 0.94067 0.94548 0.94846 1.19294 0.83719 0.95805 0.92315 0.93083 1.22072 1.00530 0.96110 1.01618 1.19653 1.06801 0.91487 0.96402 1.21237 0.96837 1.00657 0.90740 1.21384 1.03145 0.95012 0.98023 1.21306 0.95826 0.94554 0.98077 1.21452 1.08848 1.01478 0.91887 1.19336 0.95535 0.91902 0.86190 1.86313 1.83435 1.23913 1.31044 1.23157 1.01153 0.78640 1.03922 0.93227 0.93887 0.91087 0.95204 0.94809 0.94680 0.92688 0.90444 0.93652 0.91883 0.89867 0.90056 0.90505 0.94728 0.83471 0.82917 0.82957 0.84171 0.91243 0.91528 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.24 71.98 0.74 -4.51 16 2 C 0.14 6.42 6.39 86.38 0.55 6.98 16 3 N -0.59 -31.22 2.02 -706.35 -1.43 -32.64 16 4 C -0.26 -15.01 9.68 84.03 0.81 -14.20 16 5 H 0.07 3.92 7.96 -2.91 -0.02 3.89 16 6 C -0.05 -2.67 4.84 84.86 0.41 -2.26 16 7 N -0.91 -53.73 9.03 21.65 0.20 -53.53 16 8 Si 0.96 46.59 29.63 68.60 2.03 48.62 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 C 0.17 8.49 4.05 85.63 0.35 8.84 16 13 C 0.54 27.34 5.73 87.66 0.50 27.84 16 14 O -0.58 -34.81 15.42 -3.05 -0.05 -34.86 16 15 N -0.62 -25.35 2.75 -826.80 -2.28 -27.62 16 16 C 0.09 2.96 9.15 127.77 1.17 4.13 16 17 C 0.19 7.33 2.49 44.25 0.11 7.44 16 18 H 0.05 2.47 6.73 -2.39 -0.02 2.45 16 19 C -0.15 -4.58 8.04 71.98 0.58 -4.00 16 20 C -0.14 -4.38 4.58 -19.77 -0.09 -4.47 16 21 C -0.08 -1.74 8.39 22.25 0.19 -1.55 16 22 C -0.16 -2.84 10.04 22.28 0.22 -2.62 16 23 C -0.08 -1.46 10.04 22.25 0.22 -1.23 16 24 C -0.22 -5.10 9.04 22.37 0.20 -4.90 16 25 C 0.12 3.65 6.66 22.51 0.15 3.80 16 26 O -0.33 -12.25 9.80 -92.48 -0.91 -13.15 16 27 C 0.03 0.67 9.81 113.37 1.11 1.78 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.03 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.03 1.47 8.06 -2.38 -0.02 1.45 16 33 H 0.24 14.27 8.31 -92.70 -0.77 13.49 16 34 H 0.06 2.37 7.34 -2.39 -0.02 2.36 16 35 H 0.08 4.09 6.35 -2.39 -0.02 4.07 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.93 6.66 -2.39 -0.02 1.92 16 38 H 0.08 2.15 6.73 -2.39 -0.02 2.14 16 39 H 0.08 2.07 6.33 -2.39 -0.02 2.06 16 40 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.15 2.76 5.96 -2.91 -0.02 2.74 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.14 2.67 6.30 -2.91 -0.02 2.65 16 46 H 0.07 1.45 7.66 -2.38 -0.02 1.43 16 47 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 48 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -77.84 382.34 5.74 -72.10 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.94 Total: 20.00 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 7.23 Total: 21.08 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.51 Total: -113.79 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.95 Total: -48.01 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.84 5.74 -72.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355673643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.389 kcal (2) G-P(sol) polarization free energy of solvation -77.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds