Wall clock time and date at job start Tue Mar 31 2020 12:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99847 * 2 1 4 4 C 1.52997 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47321 * 304.99794 * 4 3 2 6 6 C 1.52997 * 109.47369 * 65.00095 * 4 3 2 7 7 C 1.52999 * 109.46846 * 184.99785 * 4 3 2 8 8 H 1.08999 * 109.47908 * 300.00077 * 7 4 3 9 9 C 1.53004 * 109.47261 * 179.97438 * 7 4 3 10 10 C 1.50702 * 109.47011 * 60.00163 * 7 4 3 11 11 O 1.21281 * 120.00228 * 44.93136 * 10 7 4 12 12 N 1.34777 * 119.99869 * 224.92940 * 10 7 4 13 13 C 1.46500 * 120.00220 * 5.34306 * 12 10 7 14 14 C 1.50701 * 109.47287 * 275.56759 * 13 12 10 15 15 H 1.07999 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99971 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99965 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46983 * 90.00154 * 18 16 14 20 20 H 1.48502 * 109.46866 * 209.99907 * 18 16 14 21 21 H 1.48492 * 109.47041 * 329.99921 * 18 16 14 22 22 C 1.46504 * 120.00140 * 185.34726 * 12 10 7 23 23 C 1.50701 * 109.46928 * 270.00333 * 22 12 10 24 24 C 1.38222 * 119.62175 * 94.97773 * 23 22 12 25 25 C 1.38629 * 119.16166 * 179.79214 * 24 23 22 26 26 C 1.38677 * 118.42041 * 0.47036 * 25 24 23 27 27 C 1.38180 * 119.15843 * 359.50606 * 26 25 24 28 28 N 1.31854 * 119.61240 * 274.99871 * 23 22 12 29 29 H 1.09001 * 109.47466 * 60.00195 * 1 2 3 30 30 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47554 * 300.00355 * 1 2 3 32 32 H 1.08994 * 109.47116 * 59.99778 * 3 2 1 33 33 H 1.09001 * 109.47169 * 299.99715 * 3 2 1 34 34 H 1.08996 * 109.47362 * 179.97438 * 6 4 3 35 35 H 1.09006 * 109.47119 * 299.99964 * 6 4 3 36 36 H 1.09000 * 109.47145 * 59.99591 * 6 4 3 37 37 H 1.09002 * 109.47148 * 304.21596 * 9 7 4 38 38 H 1.09007 * 109.46750 * 64.21138 * 9 7 4 39 39 H 1.08994 * 109.47233 * 184.21066 * 9 7 4 40 40 H 1.09002 * 109.46932 * 35.56181 * 13 12 10 41 41 H 1.08999 * 109.47220 * 155.56521 * 13 12 10 42 42 H 0.97008 * 119.99646 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.47572 * 150.00025 * 22 12 10 44 44 H 1.09000 * 109.46900 * 29.99998 * 22 12 10 45 45 H 1.08004 * 120.41957 * 359.97438 * 24 23 22 46 46 H 1.07998 * 120.79081 * 180.23008 * 25 24 23 47 47 H 1.07995 * 120.41598 * 179.78558 * 26 25 24 48 48 H 1.08004 * 119.61292 * 180.25810 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1572 2.5769 0.1263 8 1 3.8419 3.1931 -0.7157 9 6 5.6824 2.4561 0.1276 10 6 3.7033 3.2154 1.4137 11 8 3.7052 2.5734 2.4427 12 7 3.2953 4.4999 1.4216 13 6 3.1813 5.2401 0.1625 14 6 4.5266 5.8080 -0.2099 15 1 5.3809 5.6353 0.4277 16 6 4.6666 6.5482 -1.3647 17 7 3.6263 6.7580 -2.1415 18 14 6.3340 7.2528 -1.8260 19 1 7.0723 6.2714 -2.6610 20 1 6.1450 8.5110 -2.5917 21 1 7.1102 7.5360 -0.5922 22 6 2.9658 5.1561 2.6894 23 6 1.5040 4.9533 2.9949 24 6 1.1154 3.9081 3.8116 25 6 -0.2314 3.7330 4.0898 26 6 -1.1419 4.6139 3.5257 27 6 -0.6788 5.6358 2.7191 28 7 0.6107 5.7749 2.4796 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.0828 0.4508 -1.3061 35 1 3.5532 -0.4555 -1.3960 36 1 3.6809 1.1525 -2.1484 37 1 5.9927 1.7800 0.9244 38 1 6.0166 2.0634 -0.8328 39 1 6.1246 3.4387 0.2921 40 1 2.8403 4.5676 -0.6247 41 1 2.4644 6.0524 0.2822 42 1 3.7250 7.2785 -2.9542 43 1 3.1762 6.2227 2.6120 44 1 3.5674 4.7241 3.4891 45 1 1.8518 3.2380 4.2301 46 1 -0.5640 2.9274 4.7276 47 1 -2.1990 4.5052 3.7181 48 1 -1.3811 6.3286 2.2793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:11 Heat of formation + Delta-G solvation = -58.545750 kcal Electronic energy + Delta-G solvation = -28699.407874 eV Core-core repulsion = 24947.212031 eV Total energy + Delta-G solvation = -3752.195844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15855 -39.36451 -37.71943 -35.37289 -34.91076 -32.82040 -32.19101 -31.45657 -29.87597 -27.66146 -27.19387 -26.32859 -25.58900 -23.42487 -23.27095 -22.81323 -21.86633 -20.10145 -18.07635 -16.84708 -16.74997 -16.36334 -16.15801 -15.82205 -15.53464 -15.50058 -15.23680 -14.94519 -14.46714 -14.08211 -13.77123 -13.38578 -13.11987 -13.06135 -12.81218 -12.78254 -12.40456 -12.18557 -11.90877 -11.67749 -11.63937 -11.51144 -11.35961 -11.33310 -11.06991 -10.94853 -10.82991 -10.76515 -10.29613 -10.18693 -9.90464 -9.77517 -9.66313 -9.46147 -9.20639 -9.05038 -8.70567 -8.48265 -7.77317 -6.15144 -4.22220 1.28607 1.49618 3.23843 3.31292 3.32818 3.37754 3.74902 3.92808 4.25469 4.36068 4.58584 4.95741 5.02187 5.15847 5.17657 5.19350 5.24093 5.33675 5.36936 5.40477 5.43708 5.55464 5.68100 5.73753 5.76804 5.82051 5.88347 5.98232 5.99098 6.02085 6.09029 6.19519 6.24013 6.34451 6.37697 6.39083 6.42299 6.46320 6.69871 6.77943 6.83705 6.90790 7.25088 7.33274 7.54373 7.80249 8.08561 8.25229 8.34710 8.81590 9.00101 9.44986 10.91726 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.008794 B = 0.005950 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.370141 B = 4704.714275 C = 6614.936088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.072 4.072 5 H 0.084 0.916 6 C -0.142 4.142 7 C -0.103 4.103 8 H 0.110 0.890 9 C -0.129 4.129 10 C 0.523 3.477 11 O -0.573 6.573 12 N -0.588 5.588 13 C 0.239 3.761 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.167 3.833 23 C 0.121 3.879 24 C -0.150 4.150 25 C -0.084 4.084 26 C -0.182 4.182 27 C 0.094 3.906 28 N -0.464 5.464 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.138 0.862 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -8.037 6.248 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.091 4.091 5 H 0.102 0.898 6 C -0.200 4.200 7 C -0.124 4.124 8 H 0.128 0.872 9 C -0.187 4.187 10 C 0.312 3.688 11 O -0.454 6.454 12 N -0.317 5.317 13 C 0.120 3.880 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.042 3.958 23 C -0.019 4.019 24 C -0.171 4.171 25 C -0.110 4.110 26 C -0.202 4.202 27 C -0.064 4.064 28 N -0.174 5.174 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.156 0.844 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.306 -7.717 6.047 11.657 hybrid contribution 0.091 0.180 0.094 0.222 sum -6.215 -7.537 6.141 11.539 Atomic orbital electron populations 1.22674 0.81708 1.02106 0.99876 1.87822 1.19108 1.28487 1.95419 1.22636 0.94115 0.84026 1.00147 1.20993 0.92361 0.96066 0.99700 0.89775 1.21813 1.01115 1.00609 0.96432 1.21298 0.97779 0.95630 0.97691 0.87224 1.21611 0.92711 1.02742 1.01591 1.20557 0.76143 0.81581 0.90499 1.90557 1.56834 1.63061 1.34909 1.48266 1.63495 1.11540 1.08424 1.19493 0.97840 0.91942 0.78769 1.21466 0.94967 1.33473 1.07413 0.92024 1.24912 0.96783 0.95836 0.96113 1.69935 1.29397 1.39666 1.13751 0.86567 0.84041 0.78654 0.78653 1.20469 1.21171 1.19801 1.20155 0.87900 0.99730 0.87995 1.21894 0.96981 0.90848 0.92129 1.22137 0.96745 0.98734 0.99459 1.21548 0.93261 0.98240 0.97992 1.22081 1.00532 0.97329 1.00271 1.22757 0.92348 0.96220 0.95038 1.67598 1.02205 1.27307 1.20246 0.94268 0.89995 0.94447 0.93492 0.93307 0.92266 0.92259 0.92640 0.92923 0.91883 0.91230 0.94997 0.93463 0.92594 0.88641 0.89465 0.84389 0.85354 0.85352 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -6.26 10.24 -35.23 -0.36 -6.62 16 3 C 0.07 1.14 5.16 37.16 0.19 1.33 16 4 C -0.07 -1.21 2.00 -90.62 -0.18 -1.39 16 5 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 6 C -0.14 -2.06 8.74 37.16 0.32 -1.74 16 7 C -0.10 -1.90 1.80 -91.77 -0.16 -2.07 16 8 H 0.11 2.24 5.45 -51.93 -0.28 1.96 16 9 C -0.13 -2.20 8.70 37.16 0.32 -1.88 16 10 C 0.52 10.60 5.16 -10.98 -0.06 10.54 16 11 O -0.57 -12.15 15.84 5.56 0.09 -12.06 16 12 N -0.59 -12.22 2.45 -176.43 -0.43 -12.65 16 13 C 0.24 5.65 4.79 -5.19 -0.02 5.62 16 14 C -0.53 -13.47 8.95 -34.44 -0.31 -13.78 16 15 H 0.06 1.56 7.52 -52.49 -0.39 1.17 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 18 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.17 3.13 5.65 -5.19 -0.03 3.10 16 23 C 0.12 2.13 6.36 -82.59 -0.53 1.61 16 24 C -0.15 -2.35 9.72 -39.44 -0.38 -2.74 16 25 C -0.08 -1.10 10.18 -39.27 -0.40 -1.50 16 26 C -0.18 -2.25 10.11 -39.44 -0.40 -2.64 16 27 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 28 N -0.46 -8.33 10.27 -9.47 -0.10 -8.43 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.88 7.01 -51.93 -0.36 0.52 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.78 6.52 -51.93 -0.34 0.44 16 35 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 39 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 40 H 0.03 0.80 6.29 -51.93 -0.33 0.47 16 41 H 0.05 1.22 8.03 -51.93 -0.42 0.81 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.10 1.82 8.07 -51.93 -0.42 1.40 16 44 H 0.09 1.55 7.40 -51.93 -0.38 1.16 16 45 H 0.14 2.17 7.80 -52.48 -0.41 1.76 16 46 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -29.35 393.58 -7.82 -37.17 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.85 Total: 6.20 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.81 Total: -1.20 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.21 Total: -44.66 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.27 Total: -18.68 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.35 -7.82 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.378 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds