Wall clock time and date at job start Tue Mar 31 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47157 * 240.00108 * 2 1 3 5 5 O 1.42903 * 109.47256 * 65.00201 * 4 2 1 6 6 C 1.52996 * 109.47324 * 120.00161 * 2 1 3 7 7 N 1.46501 * 109.46907 * 295.00170 * 6 2 1 8 8 C 1.34780 * 119.99766 * 179.97438 * 7 6 2 9 9 O 1.21593 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99721 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.47084 * 34.99559 * 11 10 8 13 13 C 1.52998 * 109.46850 * 155.00131 * 11 10 8 14 14 C 1.53004 * 109.46775 * 294.99610 * 13 11 10 15 15 C 1.50704 * 109.46926 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00231 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47250 * 60.00119 * 19 17 15 21 21 H 1.48497 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47146 * 300.00393 * 19 17 15 23 23 C 1.50699 * 109.46618 * 274.99861 * 11 10 8 24 24 C 1.38240 * 120.00309 * 319.72377 * 23 11 10 25 25 C 1.38228 * 119.99930 * 179.79170 * 24 23 11 26 26 C 1.38238 * 119.99989 * 0.44144 * 25 24 23 27 27 C 1.38225 * 120.00154 * 359.81755 * 26 25 24 28 28 C 1.38236 * 119.99875 * 140.00566 * 23 11 10 29 29 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47294 * 299.99780 * 1 2 3 31 31 H 1.08996 * 109.47473 * 60.00361 * 1 2 3 32 32 H 1.08997 * 109.47286 * 304.99761 * 4 2 1 33 33 H 1.09008 * 109.47201 * 184.99542 * 4 2 1 34 34 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47199 * 54.99936 * 6 2 1 36 36 H 1.08997 * 109.47072 * 175.00220 * 6 2 1 37 37 H 0.96993 * 120.00515 * 359.97438 * 7 6 2 38 38 H 0.96993 * 120.00494 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.47473 * 54.99857 * 13 11 10 40 40 H 1.09001 * 109.46804 * 175.00280 * 13 11 10 41 41 H 1.09002 * 109.47018 * 300.00155 * 14 13 11 42 42 H 1.08993 * 109.47414 * 60.00377 * 14 13 11 43 43 H 0.97005 * 119.99873 * 179.97438 * 18 17 15 44 44 H 1.08002 * 119.99617 * 0.02562 * 24 23 11 45 45 H 1.08002 * 120.00469 * 180.27850 * 25 24 23 46 46 H 1.08000 * 119.99757 * 179.83100 * 26 25 24 47 47 H 1.07999 * 120.00548 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00233 * 359.97438 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0168 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6524 0.0353 2.4423 8 6 1.9956 -0.4137 3.6659 9 8 2.6273 -1.4464 3.7795 10 7 1.6386 0.2821 4.7636 11 6 2.0121 -0.2057 6.0936 12 1 2.9895 -0.6853 6.0434 13 6 2.0705 0.9705 7.0703 14 6 3.1960 1.9211 6.6570 15 6 3.2540 3.0794 7.6194 16 1 2.5580 3.1320 8.4436 17 6 4.1962 4.0713 7.4483 18 7 5.0439 4.0069 6.4449 19 14 4.2685 5.5066 8.6416 20 1 4.5280 4.9981 10.0125 21 1 5.3607 6.4293 8.2404 22 1 2.9739 6.2339 8.6202 23 6 0.9871 -1.2029 6.5690 24 6 -0.3566 -0.9786 6.3338 25 6 -1.2964 -1.8954 6.7660 26 6 -0.8934 -3.0322 7.4415 27 6 0.4497 -3.2539 7.6814 28 6 1.3900 -2.3392 7.2453 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 3.1264 -0.7994 -1.2056 34 1 1.9526 -0.3832 -3.2441 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7994 1.2055 37 1 1.1489 0.8593 2.3518 38 1 1.1350 1.1061 4.6731 39 1 1.1201 1.5039 7.0541 40 1 2.2610 0.5979 8.0768 41 1 4.1464 1.3876 6.6733 42 1 3.0057 2.2937 5.6506 43 1 5.7066 4.7050 6.3243 44 1 -0.6717 -0.0887 5.8090 45 1 -2.3458 -1.7224 6.5783 46 1 -1.6279 -3.7472 7.7816 47 1 0.7647 -4.1418 8.2095 48 1 2.4394 -2.5125 7.4328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432758902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:07 Heat of formation + Delta-G solvation = -79.116264 kcal Electronic energy + Delta-G solvation = -26807.126199 eV Core-core repulsion = 23054.038351 eV Total energy + Delta-G solvation = -3753.087848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.06266 -38.90757 -37.85114 -36.00847 -35.15937 -33.18607 -32.64490 -31.09910 -30.62212 -30.30962 -27.10775 -26.55387 -25.24243 -23.55092 -22.40868 -21.22964 -20.69629 -20.58756 -19.89835 -18.17370 -17.60598 -16.88235 -16.35156 -16.03673 -15.82108 -15.22394 -14.96097 -14.75175 -14.48333 -14.17903 -14.14924 -13.69219 -13.65204 -13.20880 -13.12194 -12.91055 -12.74734 -12.61068 -12.49312 -12.08151 -11.70734 -11.47853 -11.29129 -11.09471 -10.95470 -10.94173 -10.90762 -10.62955 -10.54490 -10.27281 -10.03087 -9.75449 -9.55252 -9.16362 -9.01334 -8.70906 -8.53402 -8.39084 -8.35036 -6.01236 -4.04441 1.57207 1.61954 2.91893 3.31817 3.36807 3.38899 3.56119 3.92212 4.04012 4.44179 4.51908 4.58353 4.72997 4.87807 5.06455 5.08977 5.17100 5.17322 5.28882 5.32652 5.34315 5.35097 5.56134 5.65040 5.69999 5.70582 5.75259 5.81715 5.93942 6.00826 6.07810 6.16628 6.22983 6.40160 6.58965 6.61405 6.67438 6.70340 6.79963 6.98474 7.01962 7.21119 7.24920 7.31113 7.65533 7.77696 7.98149 8.31206 8.39416 8.93510 9.02590 9.59849 11.09466 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.007220 B = 0.003878 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.022271 B = 7218.601608 C =10379.632553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.086 0.914 4 C 0.084 3.916 5 O -0.572 6.572 6 C 0.148 3.852 7 N -0.748 5.748 8 C 0.708 3.292 9 O -0.594 6.594 10 N -0.726 5.726 11 C 0.200 3.800 12 H 0.093 0.907 13 C -0.113 4.113 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.077 4.077 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.106 4.106 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.380 0.620 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.016 0.984 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 -11.905 -11.176 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.104 0.896 4 C 0.005 3.995 5 O -0.378 6.378 6 C 0.023 3.977 7 N -0.404 5.404 8 C 0.408 3.592 9 O -0.472 6.472 10 N -0.379 5.379 11 C 0.095 3.905 12 H 0.111 0.889 13 C -0.151 4.151 14 C -0.011 4.011 15 C -0.562 4.562 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.078 4.078 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.150 4.150 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.880 -12.375 -10.694 19.644 hybrid contribution -0.084 1.238 0.138 1.249 sum -10.964 -11.137 -10.556 18.859 Atomic orbital electron populations 1.21775 0.94094 1.02042 1.02103 1.21334 0.97282 1.01137 0.92690 0.89571 1.22066 0.98304 0.93963 0.85117 1.86459 1.81582 1.53351 1.16361 1.20992 0.99944 0.94632 0.82116 1.44993 1.62079 1.28799 1.04565 1.15884 0.79619 0.83401 0.80322 1.90892 1.45381 1.25062 1.85841 1.45113 1.60552 1.27523 1.04757 1.19972 0.95845 0.93819 0.80865 0.88879 1.21981 1.01591 0.94399 0.97082 1.19079 0.92339 0.92965 0.96758 1.21201 1.16337 1.06575 1.12056 0.92752 1.25010 0.95611 0.98218 0.95480 1.69964 1.19238 1.34159 1.29843 0.86680 0.77570 0.82343 0.81522 1.20248 1.21328 1.20290 1.20464 0.94843 0.95544 0.96998 1.20890 0.92555 0.99118 0.99871 1.21057 0.99071 0.94899 0.99279 1.21038 0.95891 0.97835 1.00188 1.21069 0.93225 0.99247 1.00455 1.21039 0.99741 0.93636 0.98042 0.92706 0.92538 0.91799 0.93296 0.93165 0.77341 0.91669 0.91554 0.77049 0.76929 0.92612 0.91459 0.96563 0.96305 0.92965 0.86570 0.86641 0.86701 0.86433 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.96 37.16 0.33 -0.92 16 2 C -0.11 -0.98 2.66 -90.62 -0.24 -1.22 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.67 6.43 37.16 0.24 0.91 16 5 O -0.57 -4.77 13.20 -35.23 -0.46 -5.24 16 6 C 0.15 1.69 5.06 -4.04 -0.02 1.67 16 7 N -0.75 -9.66 5.29 -65.23 -0.34 -10.01 16 8 C 0.71 11.95 8.52 -86.91 -0.74 11.21 16 9 O -0.59 -12.23 16.01 5.28 0.08 -12.14 16 10 N -0.73 -11.66 3.78 -59.81 -0.23 -11.88 16 11 C 0.20 3.52 2.17 -69.08 -0.15 3.37 16 12 H 0.09 1.85 7.44 -51.93 -0.39 1.46 16 13 C -0.11 -2.19 4.67 -26.73 -0.12 -2.32 16 14 C 0.03 0.64 4.86 -27.88 -0.14 0.50 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C -0.08 -1.23 4.91 -104.62 -0.51 -1.75 16 24 C -0.11 -1.52 9.32 -39.58 -0.37 -1.89 16 25 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 26 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 27 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 28 C -0.11 -1.61 9.67 -39.58 -0.38 -2.00 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 31 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.38 1.45 9.12 45.56 0.42 1.87 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 4.22 7.67 -40.82 -0.31 3.90 16 38 H 0.40 5.62 8.62 -40.82 -0.35 5.27 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 1.52 7.73 -52.49 -0.41 1.12 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -34.51 399.23 -10.19 -44.70 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.26 Total: 9.61 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.71 Total: -11.65 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.17 Total: -47.68 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.38 Total: -17.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.51 -10.19 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432758902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.417 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds