Wall clock time and date at job start Tue Mar 31 2020 12:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47208 * 2 1 4 4 O 1.42899 * 109.47142 * 120.00278 * 2 1 3 5 5 C 1.35671 * 117.00337 * 270.00003 * 4 2 1 6 6 C 1.38921 * 119.68815 * 179.97438 * 5 4 2 7 7 C 1.38380 * 119.11274 * 179.74755 * 6 5 4 8 8 C 1.38830 * 118.48049 * 0.53361 * 7 6 5 9 9 C 1.38044 * 119.29528 * 359.45601 * 8 7 6 10 10 N 1.31969 * 120.83088 * 0.28606 * 9 8 7 11 11 C 1.50699 * 109.47072 * 240.00357 * 2 1 3 12 12 O 1.21276 * 120.00385 * 252.64110 * 11 2 1 13 13 N 1.34782 * 119.99988 * 72.63456 * 11 2 1 14 14 C 1.46501 * 119.99838 * 185.80146 * 13 11 2 15 15 C 1.50698 * 109.46724 * 90.00497 * 14 13 11 16 16 H 1.07994 * 120.00368 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99678 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00121 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00257 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46821 * 90.00059 * 19 17 15 21 21 H 1.48494 * 109.47314 * 210.00081 * 19 17 15 22 22 H 1.48500 * 109.47015 * 330.00143 * 19 17 15 23 23 C 1.46498 * 119.99756 * 5.80941 * 13 11 2 24 24 C 1.53001 * 109.47474 * 94.94110 * 23 13 11 25 25 C 1.52998 * 109.46934 * 65.91992 * 24 23 13 26 26 C 1.52993 * 109.47269 * 185.92019 * 24 23 13 27 27 C 1.52996 * 109.46969 * 305.92106 * 24 23 13 28 28 H 1.09002 * 109.47072 * 65.41854 * 1 2 3 29 29 H 1.09003 * 109.47047 * 185.41681 * 1 2 3 30 30 H 1.09001 * 109.47003 * 305.41464 * 1 2 3 31 31 H 1.08002 * 120.44192 * 359.97438 * 6 5 4 32 32 H 1.07995 * 120.75746 * 180.29606 * 7 6 5 33 33 H 1.08005 * 120.34990 * 179.73948 * 8 7 6 34 34 H 1.07994 * 119.58417 * 180.25084 * 9 8 7 35 35 H 1.09003 * 109.46954 * 210.00271 * 14 13 11 36 36 H 1.08994 * 109.47176 * 330.00052 * 14 13 11 37 37 H 0.96994 * 120.00567 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.46758 * 214.94025 * 23 13 11 39 39 H 1.09000 * 109.47325 * 334.93621 * 23 13 11 40 40 H 1.09002 * 109.47374 * 60.00338 * 25 24 23 41 41 H 1.09002 * 109.47331 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.47504 * 299.99803 * 25 24 23 43 43 H 1.09006 * 109.47098 * 60.00028 * 26 24 23 44 44 H 1.09001 * 109.47560 * 179.97438 * 26 24 23 45 45 H 1.09005 * 109.47335 * 300.00254 * 26 24 23 46 46 H 1.09004 * 109.47148 * 62.83605 * 27 24 23 47 47 H 1.09002 * 109.47058 * 182.83388 * 27 24 23 48 48 H 1.08996 * 109.46990 * 302.83787 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2117 0.0827 2.2741 6 6 2.6737 -0.5152 3.4398 7 6 2.8841 0.2684 4.5608 8 6 2.6127 1.6275 4.4789 9 6 2.1556 2.1544 3.2876 10 7 1.9698 1.3823 2.2336 11 6 2.0323 -0.7103 -1.2305 12 8 2.5299 -1.8121 -1.1341 13 7 1.9285 -0.1212 -2.4383 14 6 2.2986 -0.8602 -3.6479 15 6 1.0919 -1.5892 -4.1801 16 1 0.1440 -1.5097 -3.6688 17 6 1.1977 -2.3568 -5.3205 18 7 0.1445 -2.9927 -5.7853 19 14 2.8368 -2.4927 -6.2063 20 1 3.6006 -3.6431 -5.6602 21 1 2.5996 -2.7001 -7.6574 22 1 3.6131 -1.2428 -6.0053 23 6 1.4457 1.2581 -2.5414 24 6 2.6391 2.2146 -2.5821 25 6 3.4315 1.9868 -3.8710 26 6 2.1367 3.6591 -2.5408 27 6 3.5427 1.9542 -1.3752 28 1 -0.3633 0.4275 -0.9345 29 1 -0.3633 -1.0231 0.0970 30 1 -0.3633 0.5955 0.8375 31 1 2.8697 -1.5769 3.4697 32 1 3.2473 -0.1679 5.4795 33 1 2.7621 2.2665 5.3367 34 1 1.9469 3.2117 3.2175 35 1 2.6638 -0.1630 -4.4021 36 1 3.0817 -1.5797 -3.4088 37 1 0.2190 -3.5331 -6.5874 38 1 0.8588 1.3704 -3.4531 39 1 0.8230 1.4906 -1.6775 40 1 2.7877 2.1723 -4.7308 41 1 4.2815 2.6686 -3.9002 42 1 3.7895 0.9577 -3.9004 43 1 1.5722 3.8213 -1.6226 44 1 2.9869 4.3405 -2.5694 45 1 1.4929 3.8446 -3.4007 46 1 3.9410 0.9411 -1.4313 47 1 4.3659 2.6688 -1.3768 48 1 2.9651 2.0673 -0.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449845731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:43 Heat of formation + Delta-G solvation = -29.392940 kcal Electronic energy + Delta-G solvation = -28737.878066 eV Core-core repulsion = 24986.946383 eV Total energy + Delta-G solvation = -3750.931683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84502 -39.74958 -37.86574 -36.89494 -33.95487 -32.73037 -32.55656 -31.82263 -30.12299 -28.32641 -27.28098 -26.99464 -25.77155 -24.57402 -23.71092 -23.08665 -21.68534 -19.35345 -18.74594 -18.22459 -17.00132 -16.77565 -16.42490 -15.89685 -15.67792 -15.44122 -15.04356 -14.58474 -14.26870 -14.14921 -13.86318 -13.77955 -13.34760 -13.29422 -12.98540 -12.70177 -12.50581 -12.30960 -12.16324 -12.11877 -12.06825 -11.70351 -11.66850 -11.38555 -11.30898 -11.12661 -10.82691 -10.77011 -10.57516 -10.39622 -10.24123 -10.08556 -10.03749 -9.70874 -9.50452 -8.96521 -8.57220 -8.53886 -7.68964 -6.08262 -4.06635 1.02796 1.13954 2.82244 3.23967 3.29469 3.35255 3.37774 3.66309 3.91165 4.19023 4.39961 4.67598 4.81148 4.88043 4.91942 4.95334 5.00702 5.07747 5.16397 5.23097 5.24413 5.26632 5.54558 5.57418 5.66018 5.71998 5.74793 5.80171 5.84489 5.87969 5.96137 6.03785 6.05613 6.07575 6.16273 6.21329 6.29530 6.34014 6.36791 6.49337 6.54882 6.78185 6.94866 7.22810 7.36912 7.62157 7.74123 8.19707 8.47029 8.89647 8.96554 9.52059 11.05080 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.004105 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.169758 B = 6819.226964 C = 7755.828927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.059 3.941 3 H 0.120 0.880 4 O -0.275 6.275 5 C 0.329 3.671 6 C -0.192 4.192 7 C -0.041 4.041 8 C -0.221 4.221 9 C 0.140 3.860 10 N -0.542 5.542 11 C 0.515 3.485 12 O -0.525 6.525 13 N -0.582 5.582 14 C 0.210 3.790 15 C -0.529 4.529 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.110 3.890 24 C -0.087 4.087 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 15.308 16.869 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 H 0.137 0.863 4 O -0.180 6.180 5 C 0.150 3.850 6 C -0.213 4.213 7 C -0.066 4.066 8 C -0.241 4.241 9 C -0.016 4.016 10 N -0.266 5.266 11 C 0.300 3.700 12 O -0.400 6.400 13 N -0.314 5.314 14 C 0.090 3.910 15 C -0.568 4.568 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.014 4.014 24 C -0.088 4.088 25 C -0.205 4.205 26 C -0.195 4.195 27 C -0.205 4.205 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.512 14.623 15.894 22.064 hybrid contribution 0.910 -0.370 0.123 0.990 sum 5.422 14.253 16.017 22.116 Atomic orbital electron populations 1.22215 0.92774 1.03923 1.03476 1.22596 0.95890 0.98645 0.82873 0.86281 1.86416 1.79288 1.34504 1.17756 1.20010 0.90341 0.87326 0.87348 1.21124 1.06335 1.02296 0.91524 1.21389 0.94237 0.93452 0.97566 1.21931 1.06043 0.96211 0.99956 1.22406 0.92644 0.99136 0.87396 1.67304 1.21918 1.04839 1.32538 1.19868 0.79865 0.86271 0.83982 1.90686 1.43746 1.19916 1.85675 1.47700 1.64382 1.12889 1.06399 1.19883 0.97278 0.92247 0.81551 1.21344 0.96337 1.28877 1.10218 0.90689 1.24830 0.96345 0.94828 0.96865 1.69889 1.29183 1.31262 1.23213 0.86899 0.84677 0.79383 0.79068 1.19918 1.21070 1.18956 1.21792 0.95030 0.81116 1.03472 1.20991 0.96324 0.95283 0.96207 1.22069 0.99501 1.02552 0.96357 1.21801 1.00950 0.94902 1.01813 1.22074 0.99321 1.01915 0.97210 0.89783 0.91025 0.91363 0.83996 0.84334 0.84797 0.82527 0.93907 0.94641 0.92575 0.89446 0.90735 0.92293 0.93339 0.91297 0.92631 0.92691 0.92348 0.92474 0.92811 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.11 37.16 0.34 -2.24 16 2 C 0.06 1.03 1.91 -27.88 -0.05 0.97 16 3 H 0.12 1.84 2.87 -51.93 -0.15 1.69 16 4 O -0.27 -4.90 9.33 -38.30 -0.36 -5.26 16 5 C 0.33 4.80 7.45 -17.12 -0.13 4.67 16 6 C -0.19 -2.29 10.04 -39.28 -0.39 -2.69 16 7 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 8 C -0.22 -1.79 10.10 -39.43 -0.40 -2.19 16 9 C 0.14 1.34 11.18 -17.56 -0.20 1.14 16 10 N -0.54 -6.99 8.65 -13.33 -0.12 -7.11 16 11 C 0.51 11.08 5.47 -10.98 -0.06 11.02 16 12 O -0.52 -13.68 16.10 -14.02 -0.23 -13.91 16 13 N -0.58 -11.96 1.93 -175.06 -0.34 -12.30 16 14 C 0.21 5.10 3.42 -5.19 -0.02 5.08 16 15 C -0.53 -15.07 9.94 -34.44 -0.34 -15.42 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 19 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 23 C 0.11 1.76 4.15 -4.04 -0.02 1.74 16 24 C -0.09 -1.18 0.85 -154.51 -0.13 -1.31 16 25 C -0.15 -2.15 7.44 37.16 0.28 -1.87 16 26 C -0.14 -1.46 8.47 37.15 0.31 -1.15 16 27 C -0.15 -2.05 7.17 37.16 0.27 -1.79 16 28 H 0.08 1.25 6.19 -51.93 -0.32 0.93 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 34 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.04 0.98 4.43 -51.93 -0.23 0.75 16 36 H 0.04 0.94 6.78 -51.93 -0.35 0.58 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.09 1.44 8.11 -51.92 -0.42 1.02 16 39 H 0.07 1.05 4.52 -51.93 -0.23 0.82 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.18 5.49 -51.93 -0.28 0.90 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.80 5.58 -51.93 -0.29 0.51 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -34.78 374.97 -7.62 -42.40 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.30 Total: 3.19 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.04 Total: -2.75 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.32 Total: -46.23 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.58 Total: -19.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.78 -7.62 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449845731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.003 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds