Wall clock time and date at job start Tue Mar 31 2020 12:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46745 * 2 1 4 4 O 1.42905 * 109.46815 * 240.00565 * 2 1 3 5 5 C 1.52994 * 109.47127 * 120.00611 * 2 1 3 6 6 N 1.46503 * 109.47043 * 184.99942 * 5 2 1 7 7 C 1.46503 * 120.00046 * 270.00207 * 6 5 2 8 8 C 1.34778 * 120.00433 * 89.99570 * 6 5 2 9 9 O 1.21592 * 119.99490 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00568 * 180.02562 * 8 6 5 11 11 C 1.46502 * 120.00306 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46581 * 325.00172 * 11 10 8 13 13 C 1.52992 * 109.47005 * 205.00035 * 11 10 8 14 14 C 1.52997 * 109.47482 * 64.99872 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.50700 * 109.46969 * 84.99373 * 11 10 8 24 24 C 1.38243 * 119.99881 * 39.73243 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 1.09007 * 109.46880 * 299.99259 * 1 2 3 30 30 H 1.08998 * 109.47600 * 59.99526 * 1 2 3 31 31 H 1.09005 * 109.47006 * 179.97438 * 1 2 3 32 32 H 0.96702 * 113.99809 * 299.99950 * 4 2 1 33 33 H 1.08999 * 109.47469 * 64.99586 * 5 2 1 34 34 H 1.09005 * 109.47147 * 304.99348 * 5 2 1 35 35 H 1.09001 * 109.46864 * 269.99728 * 7 6 5 36 36 H 1.08995 * 109.46860 * 29.99282 * 7 6 5 37 37 H 1.08991 * 109.47277 * 149.99747 * 7 6 5 38 38 H 0.97003 * 119.99459 * 359.97438 * 10 8 6 39 39 H 1.09002 * 109.47103 * 304.99625 * 13 11 10 40 40 H 1.08998 * 109.46862 * 185.00437 * 13 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 43 43 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 44 44 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 45 45 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 46 46 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 47 47 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.3344 -1.6424 0.6776 8 6 4.0759 0.4195 1.9499 9 8 3.3834 1.2695 2.4758 10 7 5.4190 0.5149 2.0063 11 6 6.0449 1.6424 2.7015 12 1 5.4379 2.5371 2.5624 13 6 7.4437 1.8812 2.1297 14 6 7.3294 2.3197 0.6684 15 6 8.7073 2.5555 0.1054 16 1 9.5775 2.4069 0.7276 17 6 8.8570 2.9598 -1.2042 18 7 10.0595 3.1650 -1.6956 19 14 7.3519 3.2161 -2.2804 20 1 6.8906 4.6225 -2.1595 21 1 7.7004 2.9294 -3.6952 22 1 6.2682 2.3002 -1.8422 23 6 6.1497 1.3302 4.1721 24 6 6.4926 0.0564 4.5854 25 6 6.5931 -0.2289 5.9343 26 6 6.3418 0.7572 6.8699 27 6 5.9938 2.0296 6.4566 28 6 5.8976 2.3160 5.1077 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7209 -1.5951 -1.2331 33 1 1.7516 -1.7716 1.2054 34 1 1.6055 -0.2618 2.1369 35 1 4.5425 -2.4360 1.3952 36 1 3.8090 -2.0585 -0.1819 37 1 5.2721 -1.1949 0.3486 38 1 5.9714 -0.1634 1.5871 39 1 8.0223 0.9593 2.1882 40 1 7.9432 2.6606 2.7051 41 1 6.7508 3.2416 0.6099 42 1 6.8300 1.5402 0.0932 43 1 10.1649 3.4498 -2.6168 44 1 6.6850 -0.7150 3.8545 45 1 6.8653 -1.2229 6.2572 46 1 6.4178 0.5336 7.9238 47 1 5.7979 2.8001 7.1876 48 1 5.6260 3.3102 4.7849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458839058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:04 Heat of formation + Delta-G solvation = -84.088287 kcal Electronic energy + Delta-G solvation = -27786.795267 eV Core-core repulsion = 24033.491816 eV Total energy + Delta-G solvation = -3753.303451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54546 -40.11482 -38.70624 -37.21117 -36.10122 -35.11687 -33.27329 -32.29510 -31.88322 -31.63939 -28.69034 -28.23478 -26.62411 -25.01539 -23.50221 -22.94255 -22.42103 -21.63586 -20.99844 -19.27535 -18.83654 -17.98891 -17.71069 -17.09204 -16.78688 -16.55264 -16.39537 -15.98359 -15.79468 -15.28683 -15.07324 -14.98586 -14.74204 -14.57731 -14.26987 -14.20034 -13.84862 -13.81864 -13.45798 -13.45564 -13.33266 -12.98989 -12.87518 -12.63495 -12.55139 -12.32433 -11.94830 -11.93680 -11.80462 -11.75816 -11.62316 -11.40758 -11.35917 -11.14424 -10.79234 -10.19574 -9.76769 -9.58398 -9.40166 -8.31806 -6.34331 0.47080 0.55166 1.30489 1.33080 1.44205 1.67791 2.15440 2.31545 2.87454 3.03909 3.06288 3.47607 3.78309 3.84064 3.97425 4.04843 4.14014 4.17670 4.21765 4.29695 4.31276 4.31503 4.47858 4.59277 4.63338 4.65485 4.74317 4.76642 4.83043 4.87553 4.92298 5.00735 5.11609 5.13882 5.18700 5.20198 5.38183 5.41428 5.53981 5.55133 5.60781 5.63017 5.64333 5.79931 5.94061 6.16122 6.26588 6.73214 6.90434 6.95259 7.30248 7.56738 8.84742 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.006684 B = 0.005955 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4188.357324 B = 4701.156181 C = 8059.869889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.088 3.912 3 H 0.057 0.943 4 O -0.574 6.574 5 C 0.106 3.894 6 N -0.627 5.627 7 C 0.076 3.924 8 C 0.699 3.301 9 O -0.632 6.632 10 N -0.724 5.724 11 C 0.209 3.791 12 H 0.068 0.932 13 C -0.090 4.090 14 C -0.003 4.003 15 C -0.526 4.526 16 H 0.040 0.960 17 C 0.014 3.986 18 N -0.946 5.946 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.257 1.257 23 C -0.099 4.099 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.128 4.128 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.389 0.611 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.405 0.595 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.003 0.997 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.124 0.876 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 -14.440 11.285 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.027 3.973 3 H 0.075 0.925 4 O -0.382 6.382 5 C -0.018 4.018 6 N -0.363 5.363 7 C -0.066 4.066 8 C 0.401 3.599 9 O -0.513 6.513 10 N -0.380 5.380 11 C 0.104 3.896 12 H 0.086 0.914 13 C -0.128 4.128 14 C -0.041 4.041 15 C -0.564 4.564 16 H 0.058 0.942 17 C -0.183 4.183 18 N -0.587 5.587 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.181 1.181 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.146 4.146 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.238 0.762 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.159 0.841 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.740 -13.231 11.375 24.883 hybrid contribution -0.036 0.004 -1.007 1.007 sum -17.776 -13.227 10.369 24.464 Atomic orbital electron populations 1.22337 0.93718 1.04142 1.02823 1.22229 0.94454 0.95641 0.84956 0.92507 1.86656 1.77500 1.30229 1.43817 1.22174 0.78226 1.02807 0.98557 1.46972 1.07349 1.24864 1.57068 1.21949 0.95087 0.90654 0.98943 1.16105 0.82379 0.82242 0.79222 1.90845 1.63088 1.43243 1.54158 1.45198 1.04703 1.28691 1.59399 1.19626 0.93930 0.88544 0.87549 0.91433 1.21575 0.93461 1.01761 0.96020 1.19453 0.94874 0.95783 0.93975 1.21436 0.93042 1.45034 0.96870 0.94184 1.25815 0.98346 0.94678 0.99456 1.70041 1.23824 1.48733 1.16095 0.85806 0.80330 0.79246 0.78069 1.19942 1.20573 1.18070 1.20277 0.99704 0.95113 0.94906 1.21055 0.99698 0.95797 0.96806 1.21426 0.99873 1.00530 0.92508 1.21474 0.99332 0.92977 1.00752 1.21380 0.99756 0.97998 0.95179 1.21184 1.00379 0.99159 0.93908 0.91390 0.92194 0.89436 0.76182 0.86388 0.90493 0.90638 0.88529 0.92422 0.75717 0.91273 0.91505 0.97820 0.96076 0.92475 0.85832 0.83788 0.83491 0.84114 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.53 71.98 0.69 -1.84 16 2 C 0.09 1.84 3.83 30.59 0.12 1.96 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 O -0.57 -11.61 12.17 -148.98 -1.81 -13.42 16 5 C 0.11 2.04 5.07 86.38 0.44 2.48 16 6 N -0.63 -15.28 2.84 -864.92 -2.45 -17.73 16 7 C 0.08 1.34 10.02 127.77 1.28 2.62 16 8 C 0.70 23.13 8.24 179.06 1.47 24.61 16 9 O -0.63 -25.54 15.58 -4.00 -0.06 -25.60 16 10 N -0.72 -22.92 3.62 -461.42 -1.67 -24.59 16 11 C 0.21 7.30 2.17 44.24 0.10 7.40 16 12 H 0.07 2.69 7.44 -2.39 -0.02 2.67 16 13 C -0.09 -3.51 4.67 30.59 0.14 -3.37 16 14 C 0.00 -0.16 3.93 29.85 0.12 -0.05 16 15 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 16 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 17 C 0.01 0.85 5.47 84.66 0.46 1.31 16 18 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 19 Si 0.94 46.20 27.47 68.60 1.88 48.09 16 20 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 23 C -0.10 -3.08 4.92 -19.86 -0.10 -3.18 16 24 C -0.12 -3.10 9.33 22.27 0.21 -2.90 16 25 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 26 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 27 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 28 C -0.13 -3.80 9.67 22.27 0.22 -3.58 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.39 3.77 9.04 -74.06 -0.67 3.10 16 33 H 0.12 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.08 1.75 7.42 -2.38 -0.02 1.73 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.31 7.11 -2.39 -0.02 1.29 16 37 H 0.06 1.18 6.36 -2.39 -0.02 1.16 16 38 H 0.41 11.29 6.33 -92.71 -0.59 10.70 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.00 0.17 7.57 -2.39 -0.02 0.15 16 42 H 0.02 0.98 6.81 -2.39 -0.02 0.96 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.12 3.01 7.71 -2.91 -0.02 2.99 16 45 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 47 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 48 H 0.12 3.42 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -78.92 392.39 1.88 -77.04 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.36 Total: 27.85 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 6.06 Total: -12.46 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -3.83 Total: -101.49 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.87 Total: -39.02 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.09 kcal Total: -78.92 1.88 -77.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458839058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.049 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds