Wall clock time and date at job start Tue Mar 31 2020 12:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47456 * 2 1 4 4 O 1.42901 * 109.46994 * 239.99878 * 2 1 3 5 5 C 1.53001 * 109.47288 * 119.99984 * 2 1 3 6 6 N 1.46492 * 109.47394 * 184.99509 * 5 2 1 7 7 C 1.46496 * 120.00675 * 270.00187 * 6 5 2 8 8 C 1.34785 * 119.99628 * 89.99900 * 6 5 2 9 9 O 1.21588 * 120.00172 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99557 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99633 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.46491 * 35.00808 * 11 10 8 13 13 C 1.53006 * 109.46847 * 155.00283 * 11 10 8 14 14 C 1.52999 * 109.46997 * 295.00407 * 13 11 10 15 15 C 1.50706 * 109.46573 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47405 * 60.00219 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.50697 * 109.47155 * 275.00354 * 11 10 8 24 24 C 1.38227 * 120.00319 * 319.72545 * 23 11 10 25 25 C 1.38236 * 120.00043 * 179.78863 * 24 23 11 26 26 C 1.38231 * 119.99864 * 0.44035 * 25 24 23 27 27 C 1.38234 * 120.00125 * 359.81442 * 26 25 24 28 28 C 1.38236 * 120.00045 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46795 * 300.00260 * 1 2 3 30 30 H 1.09003 * 109.47064 * 59.99862 * 1 2 3 31 31 H 1.08996 * 109.47594 * 180.02562 * 1 2 3 32 32 H 0.96695 * 114.00044 * 300.00396 * 4 2 1 33 33 H 1.09001 * 109.47071 * 64.99720 * 5 2 1 34 34 H 1.09003 * 109.46879 * 305.00289 * 5 2 1 35 35 H 1.08999 * 109.47192 * 270.00228 * 7 6 5 36 36 H 1.09000 * 109.46691 * 29.99602 * 7 6 5 37 37 H 1.08997 * 109.47778 * 149.99796 * 7 6 5 38 38 H 0.96999 * 120.00755 * 0.02562 * 10 8 6 39 39 H 1.09000 * 109.46866 * 175.00194 * 13 11 10 40 40 H 1.09001 * 109.46611 * 55.00311 * 13 11 10 41 41 H 1.09000 * 109.47486 * 60.00167 * 14 13 11 42 42 H 1.09001 * 109.47362 * 299.99445 * 14 13 11 43 43 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.00197 * 0.02562 * 24 23 11 45 45 H 1.08005 * 119.99848 * 180.28019 * 25 24 23 46 46 H 1.08003 * 119.99818 * 179.83112 * 26 25 24 47 47 H 1.08002 * 120.00427 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.00071 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5000 -0.6180 1.3109 7 6 4.3343 -1.6424 0.6779 8 6 4.0757 0.4197 1.9500 9 8 3.3834 1.2697 2.4758 10 7 5.4190 0.5144 2.0072 11 6 6.0448 1.6426 2.7014 12 1 5.4393 1.9190 3.5646 13 6 7.4452 1.2405 3.1685 14 6 7.3344 0.1313 4.2165 15 6 8.7138 -0.2642 4.6770 16 1 9.5827 0.2233 4.2603 17 6 8.8666 -1.2522 5.6266 18 7 7.8087 -1.8497 6.1300 19 14 10.5763 -1.7419 6.1978 20 1 11.2557 -0.5636 6.7936 21 1 10.4688 -2.8186 7.2150 22 1 11.3637 -2.2336 5.0387 23 6 6.1463 2.8166 1.7621 24 6 6.4978 2.6160 0.4404 25 6 6.5866 3.6925 -0.4222 26 6 6.3328 4.9706 0.0391 27 6 5.9865 5.1718 1.3621 28 6 5.8934 4.0949 2.2237 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 4.5424 -2.4360 1.3956 36 1 3.8090 -2.0586 -0.1817 37 1 5.2722 -1.1950 0.3489 38 1 5.9714 -0.1639 1.5881 39 1 7.9445 2.1051 3.6059 40 1 8.0225 0.8797 2.3172 41 1 6.8351 -0.7333 3.7792 42 1 6.7572 0.4921 5.0679 43 1 7.9163 -2.5449 6.7978 44 1 6.6992 1.6177 0.0807 45 1 6.8568 3.5352 -1.4560 46 1 6.4049 5.8119 -0.6343 47 1 5.7886 6.1705 1.7227 48 1 5.6224 4.2520 3.2572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458839063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:08 Heat of formation + Delta-G solvation = -64.415790 kcal Electronic energy + Delta-G solvation = -27680.152527 eV Core-core repulsion = 23927.702140 eV Total energy + Delta-G solvation = -3752.450388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24343 -38.99325 -37.72769 -35.73589 -34.88454 -33.16497 -31.90400 -30.94349 -30.58856 -30.29875 -27.47122 -26.66498 -25.36258 -23.55914 -22.39626 -22.04627 -21.07364 -20.16824 -19.66264 -17.92590 -16.90868 -16.67343 -16.35669 -16.01098 -15.65910 -15.37521 -15.00145 -14.70165 -14.47945 -13.99541 -13.90471 -13.63986 -13.26475 -13.14038 -12.96694 -12.73018 -12.68292 -12.54162 -12.42308 -12.14943 -12.06749 -11.71674 -11.58416 -11.11888 -11.06835 -10.94145 -10.89413 -10.61928 -10.55220 -10.50580 -9.98013 -9.70860 -9.54732 -9.16167 -8.76450 -8.67128 -8.40026 -8.36468 -8.26995 -6.01391 -4.04495 1.59477 1.64327 2.87065 3.31617 3.36469 3.38770 3.52166 3.99768 4.21713 4.26197 4.44212 4.69791 4.92489 4.96984 5.08272 5.10648 5.16534 5.19843 5.21343 5.34143 5.34372 5.46947 5.57344 5.62873 5.70173 5.72623 5.77831 5.83070 5.85967 5.94926 5.97103 6.18683 6.24903 6.40478 6.56618 6.61258 6.69794 6.72000 6.81884 6.99186 7.02986 7.18684 7.24480 7.47624 7.65633 7.77821 7.98119 8.24303 8.39262 8.92253 9.02526 9.59733 11.09339 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.004130 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.940786 B = 6778.600182 C = 8953.149483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.102 0.898 4 O -0.560 6.560 5 C 0.106 3.894 6 N -0.629 5.629 7 C 0.084 3.916 8 C 0.709 3.291 9 O -0.594 6.594 10 N -0.724 5.724 11 C 0.198 3.802 12 H 0.093 0.907 13 C -0.112 4.112 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.106 4.106 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.368 0.632 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 4.014 -14.937 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.025 3.975 3 H 0.120 0.880 4 O -0.364 6.364 5 C -0.019 4.019 6 N -0.366 5.366 7 C -0.060 4.060 8 C 0.411 3.589 9 O -0.472 6.472 10 N -0.379 5.379 11 C 0.093 3.907 12 H 0.111 0.889 13 C -0.150 4.150 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.079 4.079 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.214 0.786 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.003 5.064 -14.505 18.897 hybrid contribution 0.939 -1.263 0.276 1.598 sum -10.064 3.801 -14.229 17.838 Atomic orbital electron populations 1.22425 0.96061 1.02409 1.03084 1.22435 0.92754 0.97651 0.84676 0.88008 1.86644 1.77146 1.28510 1.44138 1.21985 0.79846 1.00623 0.99426 1.46789 1.06011 1.25475 1.58339 1.21705 0.95177 0.91348 0.97759 1.15850 0.82529 0.81606 0.78952 1.90873 1.62364 1.41886 1.52113 1.45256 1.04503 1.28290 1.59834 1.19988 0.96182 0.82210 0.92291 0.88897 1.21980 0.91568 1.01204 1.00296 1.19075 0.96978 0.92294 0.92758 1.21205 0.92677 1.19713 1.22535 0.92738 1.25006 0.96576 0.96319 0.96379 1.69961 1.28692 1.25475 1.29106 0.86684 0.84822 0.78177 0.78457 1.20237 1.21338 1.20288 1.20453 0.97257 0.95246 0.94908 1.20879 0.99565 0.98621 0.93276 1.21057 1.00929 0.92925 0.99307 1.21036 1.01191 0.96850 0.95853 1.21065 1.00517 0.98591 0.93838 1.21027 0.99424 0.92091 0.99910 0.91215 0.91745 0.92320 0.78560 0.90579 0.88911 0.92595 0.90824 0.91650 0.76707 0.91429 0.92673 0.96368 0.96552 0.92979 0.86683 0.86629 0.86700 0.86446 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.53 37.16 0.35 -1.11 16 2 C 0.09 0.90 3.83 -26.73 -0.10 0.80 16 3 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 4 O -0.56 -5.64 12.16 -35.23 -0.43 -6.07 16 5 C 0.11 1.20 5.06 -4.05 -0.02 1.18 16 6 N -0.63 -8.64 2.84 -187.36 -0.53 -9.17 16 7 C 0.08 0.91 10.02 59.84 0.60 1.51 16 8 C 0.71 12.42 8.24 -86.91 -0.72 11.71 16 9 O -0.59 -12.27 15.58 5.29 0.08 -12.19 16 10 N -0.72 -12.18 3.65 -59.80 -0.22 -12.40 16 11 C 0.20 3.57 2.17 -69.08 -0.15 3.42 16 12 H 0.09 1.87 7.44 -51.93 -0.39 1.49 16 13 C -0.11 -2.23 4.67 -26.73 -0.12 -2.35 16 14 C 0.03 0.65 4.86 -27.88 -0.14 0.51 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.08 -1.27 4.91 -104.63 -0.51 -1.78 16 24 C -0.11 -1.57 9.32 -39.59 -0.37 -1.94 16 25 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 26 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 27 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 28 C -0.11 -1.64 9.67 -39.58 -0.38 -2.02 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.37 2.20 9.04 45.56 0.41 2.61 16 33 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.09 1.20 7.42 -51.93 -0.39 0.82 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 37 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 38 H 0.40 6.07 6.33 -40.82 -0.26 5.81 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.47 7.75 -51.93 -0.40 0.07 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 1.61 7.73 -52.48 -0.41 1.20 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 47 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.12 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -34.01 396.02 -9.74 -43.74 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.16 Total: 8.96 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.16 Total: -9.44 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.01 Total: -47.32 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.35 Total: -18.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.01 -9.74 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458839063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.674 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds