Wall clock time and date at job start Tue Mar 31 2020 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47456 * 2 1 4 4 O 1.42901 * 109.46994 * 239.99878 * 2 1 3 5 5 C 1.53001 * 109.47288 * 119.99984 * 2 1 3 6 6 N 1.46492 * 109.47394 * 184.99509 * 5 2 1 7 7 C 1.46496 * 120.00675 * 270.00187 * 6 5 2 8 8 C 1.34785 * 119.99628 * 89.99900 * 6 5 2 9 9 O 1.21588 * 120.00172 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99557 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99633 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.46491 * 35.00808 * 11 10 8 13 13 C 1.53006 * 109.46847 * 155.00283 * 11 10 8 14 14 C 1.52999 * 109.46997 * 295.00407 * 13 11 10 15 15 C 1.50706 * 109.46573 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47405 * 60.00219 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.50697 * 109.47155 * 275.00354 * 11 10 8 24 24 C 1.38227 * 120.00319 * 319.72545 * 23 11 10 25 25 C 1.38236 * 120.00043 * 179.78863 * 24 23 11 26 26 C 1.38231 * 119.99864 * 0.44035 * 25 24 23 27 27 C 1.38234 * 120.00125 * 359.81442 * 26 25 24 28 28 C 1.38236 * 120.00045 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46795 * 300.00260 * 1 2 3 30 30 H 1.09003 * 109.47064 * 59.99862 * 1 2 3 31 31 H 1.08996 * 109.47594 * 180.02562 * 1 2 3 32 32 H 0.96695 * 114.00044 * 300.00396 * 4 2 1 33 33 H 1.09001 * 109.47071 * 64.99720 * 5 2 1 34 34 H 1.09003 * 109.46879 * 305.00289 * 5 2 1 35 35 H 1.08999 * 109.47192 * 270.00228 * 7 6 5 36 36 H 1.09000 * 109.46691 * 29.99602 * 7 6 5 37 37 H 1.08997 * 109.47778 * 149.99796 * 7 6 5 38 38 H 0.96999 * 120.00755 * 0.02562 * 10 8 6 39 39 H 1.09000 * 109.46866 * 175.00194 * 13 11 10 40 40 H 1.09001 * 109.46611 * 55.00311 * 13 11 10 41 41 H 1.09000 * 109.47486 * 60.00167 * 14 13 11 42 42 H 1.09001 * 109.47362 * 299.99445 * 14 13 11 43 43 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.00197 * 0.02562 * 24 23 11 45 45 H 1.08005 * 119.99848 * 180.28019 * 25 24 23 46 46 H 1.08003 * 119.99818 * 179.83112 * 26 25 24 47 47 H 1.08002 * 120.00427 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.00071 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5000 -0.6180 1.3109 7 6 4.3343 -1.6424 0.6779 8 6 4.0757 0.4197 1.9500 9 8 3.3834 1.2697 2.4758 10 7 5.4190 0.5144 2.0072 11 6 6.0448 1.6426 2.7014 12 1 5.4393 1.9190 3.5646 13 6 7.4452 1.2405 3.1685 14 6 7.3344 0.1313 4.2165 15 6 8.7138 -0.2642 4.6770 16 1 9.5827 0.2233 4.2603 17 6 8.8666 -1.2522 5.6266 18 7 7.8087 -1.8497 6.1300 19 14 10.5763 -1.7419 6.1978 20 1 11.2557 -0.5636 6.7936 21 1 10.4688 -2.8186 7.2150 22 1 11.3637 -2.2336 5.0387 23 6 6.1463 2.8166 1.7621 24 6 6.4978 2.6160 0.4404 25 6 6.5866 3.6925 -0.4222 26 6 6.3328 4.9706 0.0391 27 6 5.9865 5.1718 1.3621 28 6 5.8934 4.0949 2.2237 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 4.5424 -2.4360 1.3956 36 1 3.8090 -2.0586 -0.1817 37 1 5.2722 -1.1950 0.3489 38 1 5.9714 -0.1639 1.5881 39 1 7.9445 2.1051 3.6059 40 1 8.0225 0.8797 2.3172 41 1 6.8351 -0.7333 3.7792 42 1 6.7572 0.4921 5.0679 43 1 7.9163 -2.5449 6.7978 44 1 6.6992 1.6177 0.0807 45 1 6.8568 3.5352 -1.4560 46 1 6.4049 5.8119 -0.6343 47 1 5.7886 6.1705 1.7227 48 1 5.6224 4.2520 3.2572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458839063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:07 Heat of formation + Delta-G solvation = -86.211695 kcal Electronic energy + Delta-G solvation = -27681.097669 eV Core-core repulsion = 23927.702140 eV Total energy + Delta-G solvation = -3753.395529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52849 -40.11243 -38.68315 -37.15993 -36.08939 -35.13554 -33.13633 -32.08688 -31.82900 -31.62763 -28.48897 -28.15980 -26.60677 -25.18818 -23.51100 -22.93888 -22.61004 -21.60288 -20.99144 -19.15201 -18.52831 -17.97494 -17.55137 -17.27785 -16.62445 -16.58759 -16.39921 -16.12632 -15.77294 -15.20535 -15.03459 -14.90767 -14.56372 -14.52186 -14.22663 -14.04555 -13.91753 -13.67711 -13.44501 -13.38335 -13.30326 -12.85872 -12.82983 -12.55508 -12.53575 -12.45070 -12.14945 -11.92821 -11.91635 -11.75122 -11.45092 -11.39760 -11.22008 -11.12766 -10.54575 -10.16616 -9.77621 -9.58641 -9.38718 -8.18127 -6.29676 0.46795 0.54255 1.41055 1.43617 1.51419 1.69908 2.16359 2.41703 2.87357 3.07298 3.15088 3.48214 3.82178 3.85175 3.97675 4.04457 4.16058 4.19028 4.23263 4.29646 4.31297 4.35774 4.48804 4.62626 4.65876 4.66941 4.75262 4.78654 4.85229 4.90578 4.97694 5.09289 5.13062 5.17984 5.19070 5.21816 5.46403 5.51073 5.56117 5.60621 5.63115 5.68043 5.81840 5.85082 5.95007 6.15451 6.24304 6.86512 6.90248 6.96866 7.39664 7.58012 8.92885 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.004130 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.940786 B = 6778.600182 C = 8953.149483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 H 0.063 0.937 4 O -0.570 6.570 5 C 0.101 3.899 6 N -0.626 5.626 7 C 0.079 3.921 8 C 0.699 3.301 9 O -0.634 6.634 10 N -0.721 5.721 11 C 0.210 3.790 12 H 0.059 0.941 13 C -0.094 4.094 14 C 0.035 3.965 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.264 1.264 23 C -0.097 4.097 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.388 0.612 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.002 0.998 42 H -0.022 1.022 43 H 0.262 0.738 44 H 0.121 0.879 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.143 0.857 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 3.818 -17.382 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.037 3.963 3 H 0.081 0.919 4 O -0.378 6.378 5 C -0.023 4.023 6 N -0.362 5.362 7 C -0.063 4.063 8 C 0.400 3.600 9 O -0.516 6.516 10 N -0.376 5.376 11 C 0.105 3.895 12 H 0.077 0.923 13 C -0.132 4.132 14 C -0.002 4.002 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.188 1.188 23 C -0.098 4.098 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.147 4.147 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.238 0.762 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.020 0.980 42 H -0.004 1.004 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.160 0.840 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.214 4.830 -16.988 20.402 hybrid contribution 0.641 -1.204 0.995 1.688 sum -9.573 3.626 -15.993 18.988 Atomic orbital electron populations 1.22347 0.93904 1.04037 1.02891 1.22114 0.94197 0.95595 0.84429 0.91918 1.86601 1.77488 1.30214 1.43468 1.22211 0.78320 1.02710 0.99018 1.46935 1.07307 1.24657 1.57292 1.21905 0.95369 0.90460 0.98575 1.16120 0.82441 0.82227 0.79183 1.90831 1.63141 1.43701 1.53928 1.45142 1.04608 1.28229 1.59651 1.19605 0.94225 0.83566 0.92140 0.92252 1.21711 0.93141 0.99238 0.99093 1.18904 0.95400 0.93190 0.92704 1.21645 0.93745 1.19825 1.22762 0.91985 1.25935 1.00852 0.96283 0.96456 1.70108 1.31198 1.26112 1.29766 0.85546 0.79623 0.77899 0.78247 1.19487 1.21098 1.18849 1.20291 0.99509 0.94630 0.95419 1.21028 0.99832 0.99743 0.92808 1.21424 0.99904 0.92611 1.00357 1.21473 0.99367 0.97779 0.95877 1.21383 0.99675 0.99027 0.94074 1.21178 1.00502 0.92723 1.00338 0.91745 0.91601 0.89759 0.76195 0.86959 0.91131 0.92708 0.87718 0.91549 0.75878 0.91580 0.91252 0.97982 1.00357 0.92919 0.86106 0.83823 0.83339 0.83966 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.53 71.98 0.69 -1.89 16 2 C 0.10 2.00 3.83 30.59 0.12 2.12 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 O -0.57 -10.34 12.16 -148.98 -1.81 -12.15 16 5 C 0.10 2.25 5.06 86.38 0.44 2.69 16 6 N -0.63 -17.35 2.84 -864.93 -2.45 -19.80 16 7 C 0.08 1.64 10.02 127.77 1.28 2.92 16 8 C 0.70 25.73 8.24 179.05 1.47 27.20 16 9 O -0.63 -28.05 15.58 -3.99 -0.06 -28.12 16 10 N -0.72 -25.44 3.65 -461.39 -1.68 -27.12 16 11 C 0.21 8.04 2.17 44.25 0.10 8.14 16 12 H 0.06 2.64 7.44 -2.39 -0.02 2.62 16 13 C -0.09 -3.86 4.67 30.60 0.14 -3.72 16 14 C 0.04 1.84 4.86 29.85 0.15 1.98 16 15 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 19 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 C -0.10 -3.28 4.91 -19.87 -0.10 -3.37 16 24 C -0.12 -3.39 9.32 22.27 0.21 -3.18 16 25 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 26 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 27 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 28 C -0.13 -4.10 9.67 22.27 0.22 -3.88 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.39 3.39 9.04 -74.06 -0.67 2.72 16 33 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 34 H 0.07 1.91 7.42 -2.39 -0.02 1.89 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.51 7.11 -2.39 -0.02 1.50 16 37 H 0.07 1.36 6.36 -2.39 -0.02 1.35 16 38 H 0.40 12.73 6.33 -92.71 -0.59 12.15 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.00 0.10 7.75 -2.39 -0.02 0.08 16 42 H -0.02 -1.31 8.14 -2.39 -0.02 -1.32 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.12 3.28 7.73 -2.91 -0.02 3.26 16 45 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 46 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 48 H 0.11 3.65 8.04 -2.91 -0.02 3.62 16 Total: -1.00 -76.79 396.02 2.07 -74.72 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.31 Total: 31.91 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 6.07 Total: -8.99 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.85 Total: -103.25 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.87 Total: -40.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.79 2.07 -74.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458839063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.489 kcal (2) G-P(sol) polarization free energy of solvation -76.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds