Wall clock time and date at job start Tue Mar 31 2020 12:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 C 1.52999 * 109.46904 * 119.99947 * 2 1 3 5 5 O 1.42903 * 109.47096 * 175.00243 * 4 2 1 6 6 C 1.42901 * 114.00260 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46498 * 329.99818 * 6 5 4 8 8 C 1.52993 * 109.47066 * 89.99543 * 6 5 4 9 9 C 1.50698 * 109.46998 * 210.00024 * 6 5 4 10 10 O 1.21283 * 120.00174 * 343.97594 * 9 6 5 11 11 N 1.34771 * 119.99974 * 163.98018 * 9 6 5 12 12 C 1.46499 * 120.00136 * 5.22092 * 11 9 6 13 13 C 1.50701 * 109.47575 * 95.82566 * 12 11 9 14 14 H 1.08004 * 119.99541 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00235 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99759 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00097 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47010 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47204 * 120.00129 * 17 15 13 20 20 H 1.48492 * 109.47406 * 240.00530 * 17 15 13 21 21 C 1.46503 * 120.00477 * 185.21758 * 11 9 6 22 22 C 1.50706 * 109.46888 * 89.99699 * 21 11 9 23 23 C 1.38670 * 120.41980 * 269.72457 * 22 21 11 24 24 C 1.38623 * 118.41908 * 179.78517 * 23 22 21 25 25 C 1.38233 * 119.16347 * 0.51326 * 24 23 22 26 26 N 1.31857 * 120.75701 * 359.72705 * 25 24 23 27 27 C 1.31883 * 121.73130 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47373 * 300.00139 * 1 2 3 29 29 H 1.08996 * 109.47050 * 60.00120 * 1 2 3 30 30 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47064 * 239.99925 * 2 1 3 32 32 H 1.09001 * 109.47367 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47519 * 300.00348 * 3 2 1 34 34 H 1.09007 * 109.47230 * 60.00157 * 3 2 1 35 35 H 1.09002 * 109.47359 * 55.00114 * 4 2 1 36 36 H 1.09002 * 109.47431 * 294.99773 * 4 2 1 37 37 H 1.09001 * 109.46973 * 65.76390 * 8 6 5 38 38 H 1.08999 * 109.47070 * 185.75377 * 8 6 5 39 39 H 1.08999 * 109.47462 * 305.76032 * 8 6 5 40 40 H 1.08999 * 109.47364 * 215.83091 * 12 11 9 41 41 H 1.09002 * 109.47006 * 335.82573 * 12 11 9 42 42 H 0.97003 * 119.99547 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47369 * 210.00096 * 21 11 9 44 44 H 1.09003 * 109.47005 * 330.00289 * 21 11 9 45 45 H 1.08000 * 120.78752 * 0.02562 * 23 22 21 46 46 H 1.08002 * 120.42121 * 180.21996 * 24 23 22 47 47 H 1.07995 * 119.62186 * 179.75168 * 25 24 23 48 48 H 1.07997 * 119.62256 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8238 1.1921 6 6 4.0449 -1.4856 2.3176 7 1 3.4249 -1.3168 3.1980 8 6 4.1336 -2.9869 2.0365 9 6 5.4271 -0.9380 2.5641 10 8 5.9868 -0.2938 1.7023 11 7 6.0413 -1.1643 3.7421 12 6 5.4156 -2.0367 4.7389 13 6 5.9756 -3.4298 4.6096 14 1 6.7233 -3.6438 3.8601 15 6 5.5344 -4.4309 5.4487 16 7 4.6243 -4.1701 6.3616 17 14 6.2281 -6.1578 5.2879 18 1 7.2300 -6.1888 4.1922 19 1 6.8782 -6.5509 6.5638 20 1 5.1280 -7.1066 4.9802 21 6 7.3349 -0.5379 4.0261 22 6 7.1118 0.7984 4.6863 23 6 6.9939 1.9487 3.9210 24 6 6.7848 3.1551 4.5711 25 6 6.7121 3.1727 5.9514 26 7 6.8337 2.0593 6.6473 27 6 7.0284 0.8935 6.0624 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 4.8342 -3.1629 1.2203 38 1 4.4807 -3.5041 2.9310 39 1 3.1493 -3.3632 1.7581 40 1 5.6221 -1.6534 5.7381 41 1 4.3383 -2.0616 4.5748 42 1 4.3135 -4.8746 6.9517 43 1 7.9114 -1.1803 4.6916 44 1 7.8821 -0.3957 3.0941 45 1 7.0594 1.9052 2.8439 46 1 6.6848 4.0704 4.0066 47 1 6.5534 4.1089 6.4657 48 1 7.1229 0.0027 6.6656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522153429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:37 Heat of formation + Delta-G solvation = -75.350631 kcal Electronic energy + Delta-G solvation = -27980.468049 eV Core-core repulsion = 24227.543491 eV Total energy + Delta-G solvation = -3752.924558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49249 -40.70192 -39.03658 -36.94221 -36.09979 -34.84288 -33.69425 -32.78354 -31.71873 -29.35205 -28.02353 -27.71945 -27.10178 -25.10287 -24.63646 -24.28828 -22.86095 -21.30509 -20.13344 -18.69523 -18.32343 -17.92670 -17.81148 -17.14011 -16.85196 -16.71055 -16.50493 -16.26875 -15.55977 -15.45798 -14.85745 -14.79122 -14.47957 -14.36867 -14.20451 -14.14987 -13.94123 -13.57100 -13.34108 -13.25481 -13.23353 -13.02707 -12.78623 -12.71657 -12.65535 -12.44886 -12.40482 -12.04155 -11.96981 -11.80726 -11.67083 -11.50458 -10.96470 -10.77240 -10.60659 -10.47023 -10.38870 -9.95076 -9.53037 -8.19217 -6.31156 0.10548 0.31296 1.42058 1.47188 1.55599 1.64726 1.97460 2.42317 2.79874 3.02748 3.12445 3.53137 3.61347 3.84589 3.87828 3.89900 3.95185 4.04385 4.07628 4.09899 4.18389 4.22682 4.45733 4.46256 4.60506 4.66327 4.72650 4.74200 4.79363 4.81665 4.85270 4.87377 4.88895 4.99266 5.04750 5.16691 5.19094 5.20613 5.35504 5.38514 5.41898 5.46558 5.63593 5.76203 5.77236 6.04947 6.16141 6.50710 6.80377 6.99986 7.24075 7.39952 8.86619 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.007078 B = 0.005780 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.982640 B = 4843.376542 C = 7909.690454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.141 4.141 4 C 0.055 3.945 5 O -0.379 6.379 6 C 0.085 3.915 7 H 0.080 0.920 8 C -0.171 4.171 9 C 0.517 3.483 10 O -0.574 6.574 11 N -0.588 5.588 12 C 0.249 3.751 13 C -0.535 4.535 14 H 0.057 0.943 15 C 0.030 3.970 16 N -0.915 5.915 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.162 3.838 22 C -0.156 4.156 23 C -0.067 4.067 24 C -0.169 4.169 25 C 0.091 3.909 26 N -0.510 5.510 27 C 0.103 3.897 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.268 0.732 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.166 0.834 47 H 0.187 0.813 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 10.360 -6.549 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.021 4.021 5 O -0.298 6.298 6 C 0.024 3.976 7 H 0.098 0.902 8 C -0.229 4.229 9 C 0.305 3.695 10 O -0.454 6.454 11 N -0.319 5.319 12 C 0.129 3.871 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.171 4.171 16 N -0.554 5.554 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.039 3.961 22 C -0.159 4.159 23 C -0.094 4.094 24 C -0.188 4.188 25 C -0.066 4.066 26 N -0.218 5.218 27 C -0.053 4.053 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.149 0.851 46 H 0.183 0.817 47 H 0.204 0.796 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.834 10.702 -6.079 12.891 hybrid contribution 0.308 -1.399 -0.417 1.492 sum -3.526 9.303 -6.495 11.882 Atomic orbital electron populations 1.21753 0.92228 1.02681 1.02998 1.21106 0.96928 0.96400 0.96579 1.21751 1.00492 0.95493 1.02106 1.22920 0.79972 1.00048 0.99179 1.87946 1.21282 1.78706 1.41875 1.21739 0.92049 0.93786 0.90023 0.90204 1.22342 1.02895 0.93295 1.04322 1.20584 0.88065 0.79287 0.81542 1.90556 1.67352 1.42753 1.44762 1.48138 1.20927 1.46520 1.16342 1.19231 0.93320 0.87927 0.86635 1.21554 1.23725 0.94304 1.17756 0.92472 1.25521 0.95006 1.02100 0.94509 1.70011 1.30256 1.34704 1.20455 0.85640 0.78497 0.80388 0.78001 1.19472 1.20720 1.20457 1.20166 0.85481 0.89981 1.00495 1.21267 1.02580 0.96695 0.95356 1.21747 0.94452 0.92451 1.00726 1.22457 1.00933 0.99213 0.96207 1.23348 0.94350 0.97130 0.91797 1.67723 1.12836 0.99399 1.41878 1.22737 0.94713 0.95900 0.91988 0.92126 0.90652 0.91903 0.90907 0.94358 0.91104 0.92770 0.92384 0.93378 0.93065 0.88630 0.90637 0.95930 0.95104 0.92318 0.88709 0.89919 0.85103 0.81693 0.79599 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 2 C -0.09 -2.09 3.16 -10.80 -0.03 -2.13 16 3 C -0.14 -3.28 9.09 71.98 0.65 -2.62 16 4 C 0.06 1.54 5.13 71.98 0.37 1.90 16 5 O -0.38 -13.79 9.11 -130.45 -1.19 -14.98 16 6 C 0.08 3.25 2.29 29.85 0.07 3.32 16 7 H 0.08 3.02 6.38 -2.39 -0.02 3.01 16 8 C -0.17 -6.39 9.29 71.98 0.67 -5.72 16 9 C 0.52 21.87 6.98 87.66 0.61 22.48 16 10 O -0.57 -26.28 16.05 15.49 0.25 -26.03 16 11 N -0.59 -24.17 2.44 -830.49 -2.03 -26.20 16 12 C 0.25 11.29 4.68 85.63 0.40 11.69 16 13 C -0.53 -25.90 7.09 25.60 0.18 -25.72 16 14 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 15 C 0.03 1.47 5.46 84.65 0.46 1.93 16 16 N -0.92 -47.88 13.29 21.45 0.28 -47.60 16 17 Si 0.95 39.99 29.54 68.60 2.03 42.01 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.16 5.89 5.62 85.63 0.48 6.37 16 22 C -0.16 -5.22 5.48 -19.77 -0.11 -5.33 16 23 C -0.07 -2.04 9.86 22.46 0.22 -1.81 16 24 C -0.17 -4.09 10.11 22.36 0.23 -3.87 16 25 C 0.09 2.28 11.18 84.69 0.95 3.23 16 26 N -0.51 -16.23 10.36 -195.84 -2.03 -18.26 16 27 C 0.10 3.47 10.86 84.67 0.92 4.39 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.49 7.77 -2.39 -0.02 1.47 16 36 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.10 4.03 4.68 -2.39 -0.01 4.02 16 39 H 0.07 2.43 7.77 -2.39 -0.02 2.41 16 40 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 41 H 0.03 1.46 5.53 -2.39 -0.01 1.45 16 42 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 43 H 0.09 3.35 8.02 -2.39 -0.02 3.33 16 44 H 0.08 3.01 7.31 -2.39 -0.02 2.99 16 45 H 0.13 4.10 7.97 -2.91 -0.02 4.07 16 46 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 48 H 0.15 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -60.45 394.33 4.97 -55.48 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.93 Total: 29.11 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.73 Total: 6.47 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -3.77 Total: -92.06 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.94 Total: -41.00 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -60.45 4.97 -55.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522153429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.871 kcal (2) G-P(sol) polarization free energy of solvation -60.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds