Wall clock time and date at job start Tue Mar 31 2020 12:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.53001 * 109.47204 * 119.99915 * 2 1 3 5 5 C 1.53004 * 109.47053 * 175.00370 * 4 2 1 6 6 O 1.42905 * 109.46873 * 180.02562 * 5 4 2 7 7 C 1.35979 * 116.99591 * 179.97438 * 6 5 4 8 8 C 1.38540 * 120.08262 * 359.97438 * 7 6 5 9 9 C 1.38255 * 120.01306 * 180.02562 * 8 7 6 10 10 C 1.38276 * 120.17614 * 359.97438 * 9 8 7 11 11 C 1.38209 * 120.16130 * 359.97438 * 10 9 8 12 12 C 1.38710 * 119.98350 * 0.02562 * 11 10 9 13 13 N 1.40169 * 120.08373 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00451 * 24.76424 * 13 12 11 15 15 O 1.21600 * 119.99894 * 5.64400 * 14 13 12 16 16 N 1.34774 * 120.00127 * 185.63854 * 14 13 12 17 17 C 1.46499 * 119.99602 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47527 * 324.99667 * 17 16 14 19 19 C 1.52997 * 109.47596 * 85.00269 * 17 16 14 20 20 C 1.50707 * 109.46658 * 204.99712 * 17 16 14 21 21 H 1.07998 * 120.00219 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99853 * 179.97438 * 20 17 16 23 23 N 1.31522 * 120.00162 * 0.02562 * 22 20 17 24 24 Si 1.86799 * 120.00085 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47423 * 90.00251 * 24 22 20 26 26 H 1.48504 * 109.47286 * 210.00486 * 24 22 20 27 27 H 1.48504 * 109.46997 * 329.99946 * 24 22 20 28 28 H 1.08994 * 109.47040 * 299.99670 * 1 2 3 29 29 H 1.08996 * 109.47334 * 60.00469 * 1 2 3 30 30 H 1.09008 * 109.46478 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47132 * 239.99598 * 2 1 3 32 32 H 1.08997 * 109.47033 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46735 * 299.99898 * 3 2 1 34 34 H 1.09000 * 109.46650 * 60.00015 * 3 2 1 35 35 H 1.09002 * 109.47311 * 55.00283 * 4 2 1 36 36 H 1.09005 * 109.47056 * 295.00060 * 4 2 1 37 37 H 1.09002 * 109.47133 * 59.99804 * 5 4 2 38 38 H 1.09000 * 109.46515 * 299.99565 * 5 4 2 39 39 H 1.07997 * 119.99731 * 0.04489 * 8 7 6 40 40 H 1.08002 * 119.91223 * 180.26943 * 9 8 7 41 41 H 1.07996 * 119.91599 * 179.97438 * 10 9 8 42 42 H 1.07996 * 120.00355 * 180.02562 * 11 10 9 43 43 H 0.97004 * 119.99278 * 204.77168 * 13 12 11 44 44 H 0.96997 * 120.00040 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.46829 * 299.99996 * 19 17 16 46 46 H 1.09002 * 109.47174 * 59.99182 * 19 17 16 47 47 H 1.08995 * 109.47882 * 179.97438 * 19 17 16 48 48 H 0.96997 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5051 2.3545 7 6 5.3849 -1.6868 2.4570 8 6 6.2261 -1.2270 1.4569 9 6 7.5920 -1.4131 1.5624 10 6 8.1227 -2.0572 2.6649 11 6 7.2903 -2.5179 3.6674 12 6 5.9189 -2.3348 3.5684 13 7 5.0727 -2.8007 4.5841 14 6 5.5468 -2.9613 5.8354 15 8 6.6775 -2.6061 6.1074 16 7 4.7677 -3.5155 6.7853 17 6 5.2829 -3.6895 8.1456 18 1 6.3464 -3.9248 8.1041 19 6 5.0771 -2.3971 8.9382 20 6 4.5452 -4.8163 8.8218 21 1 3.7704 -5.3496 8.2913 22 6 4.8601 -5.1669 10.1176 23 7 5.8040 -4.5176 10.7636 24 14 3.9462 -6.5640 10.9556 25 1 4.6558 -7.8432 10.7004 26 1 3.8903 -6.3121 12.4180 27 1 2.5657 -6.6472 10.4146 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6055 -1.7198 1.2952 36 1 1.7517 -0.1583 2.1370 37 1 3.9995 0.1677 1.1421 38 1 3.8532 -1.3939 0.3003 39 1 5.8149 -0.7229 0.5949 40 1 8.2467 -1.0501 0.7838 41 1 9.1903 -2.2006 2.7427 42 1 7.7075 -3.0202 4.5275 43 1 4.1459 -3.0077 4.3863 44 1 3.8656 -3.7984 6.5684 45 1 5.6107 -1.5821 8.4491 46 1 4.0136 -2.1618 8.9798 47 1 5.4601 -2.5266 9.9504 48 1 6.0253 -4.7641 11.6753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594148296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:10 Heat of formation + Delta-G solvation = -77.261623 kcal Electronic energy + Delta-G solvation = -26646.334916 eV Core-core repulsion = 22893.327491 eV Total energy + Delta-G solvation = -3753.007425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82751 -40.57768 -38.65868 -37.15190 -36.86244 -35.64802 -34.34136 -31.50624 -31.36685 -30.34863 -29.26899 -28.01622 -27.34191 -25.24137 -24.13189 -22.91339 -22.56854 -21.51653 -20.88606 -19.81165 -19.25169 -18.33823 -17.81936 -17.18880 -17.00736 -16.75666 -16.14044 -15.99062 -15.68479 -15.60350 -15.16745 -14.94823 -14.66837 -14.62230 -14.39543 -14.10025 -13.82349 -13.52887 -13.08680 -13.05936 -12.95779 -12.89794 -12.75796 -12.66533 -12.53094 -12.27923 -12.24610 -12.11415 -11.88115 -11.75691 -11.52289 -11.51255 -11.34280 -11.11434 -10.95056 -10.61051 -9.85967 -9.50394 -8.67544 -8.17872 -6.35262 0.37151 0.46837 1.45079 1.46053 1.56566 1.74346 2.15868 2.18459 2.42157 2.90800 3.12554 3.41000 3.80226 3.89014 3.96383 4.03138 4.09709 4.24846 4.27097 4.44149 4.47038 4.52761 4.58378 4.72657 4.77068 4.81173 4.87234 4.91869 4.92624 5.02423 5.07932 5.09226 5.11136 5.15870 5.30892 5.35160 5.39498 5.44331 5.49829 5.56526 5.57707 5.63535 5.68345 5.83759 5.91375 6.08193 6.24942 6.48243 6.71995 7.19815 7.33192 7.65030 8.88806 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.002738 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.869982 B =10225.596175 C =11838.082738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.113 4.113 5 C 0.055 3.945 6 O -0.332 6.332 7 C 0.090 3.910 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.139 4.139 11 C -0.125 4.125 12 C 0.122 3.878 13 N -0.670 5.670 14 C 0.693 3.307 15 O -0.622 6.622 16 N -0.715 5.715 17 C 0.289 3.711 18 H 0.001 0.999 19 C -0.134 4.134 20 C -0.547 4.547 21 H 0.073 0.927 22 C 0.014 3.986 23 N -0.917 5.917 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.417 0.583 44 H 0.402 0.598 45 H 0.010 0.990 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 8.896 -25.861 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.212 4.212 4 C -0.150 4.150 5 C -0.019 4.019 6 O -0.246 6.246 7 C 0.042 3.958 8 C -0.202 4.202 9 C -0.118 4.118 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.026 3.974 13 N -0.318 5.318 14 C 0.393 3.607 15 O -0.503 6.503 16 N -0.367 5.367 17 C 0.186 3.814 18 H 0.019 0.981 19 C -0.193 4.193 20 C -0.585 4.585 21 H 0.091 0.909 22 C -0.186 4.186 23 N -0.555 5.555 24 Si 0.799 3.201 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.184 1.184 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.139 0.861 43 H 0.254 0.746 44 H 0.237 0.763 45 H 0.029 0.971 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.703 9.119 -25.205 27.629 hybrid contribution -0.820 -0.803 0.789 1.393 sum -7.523 8.316 -24.416 26.868 Atomic orbital electron populations 1.21833 0.94394 1.02107 1.02185 1.21019 0.96346 0.96316 0.96986 1.21961 1.01318 0.95687 1.02192 1.21622 0.92065 1.01908 0.99429 1.23124 0.95840 0.96845 0.86133 1.85980 1.18469 1.75041 1.45133 1.18643 0.83693 0.98233 0.95202 1.21356 0.94205 1.05129 0.99555 1.21271 0.94690 0.97868 0.97967 1.21222 1.00438 1.00273 0.93874 1.21330 0.91732 1.01330 1.00217 1.17211 0.90493 1.01220 0.88501 1.42356 1.14574 1.68759 1.06085 1.16227 0.84690 0.79042 0.80721 1.90809 1.20205 1.57774 1.81486 1.45489 1.17291 1.63366 1.10563 1.18269 0.93578 0.93566 0.76002 0.98110 1.21927 0.98917 0.96399 1.02076 1.21514 1.21127 1.16817 0.99038 0.90880 1.25808 0.95831 0.99249 0.97679 1.70056 1.31313 1.41729 1.12396 0.85305 0.79080 0.78399 0.77297 1.20349 1.20833 1.18415 0.92964 0.91638 0.92458 0.89966 0.92239 0.91673 0.93082 0.90992 0.91787 0.91025 0.90585 0.82220 0.82263 0.84166 0.86130 0.74557 0.76319 0.97129 0.94161 0.91200 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 71.98 0.66 -0.76 16 2 C -0.09 -0.88 2.92 -10.79 -0.03 -0.91 16 3 C -0.15 -1.48 8.95 71.98 0.64 -0.84 16 4 C -0.11 -1.54 5.05 30.60 0.15 -1.38 16 5 C 0.05 0.84 4.50 71.98 0.32 1.17 16 6 O -0.33 -7.87 9.55 -93.32 -0.89 -8.76 16 7 C 0.09 2.40 6.70 22.59 0.15 2.55 16 8 C -0.18 -3.78 9.04 22.35 0.20 -3.58 16 9 C -0.10 -2.01 10.04 22.28 0.22 -1.79 16 10 C -0.14 -3.67 10.04 22.27 0.22 -3.45 16 11 C -0.13 -4.37 8.72 22.38 0.20 -4.18 16 12 C 0.12 4.09 6.45 38.17 0.25 4.34 16 13 N -0.67 -23.56 5.30 -316.79 -1.68 -25.24 16 14 C 0.69 30.59 8.33 179.06 1.49 32.09 16 15 O -0.62 -32.39 13.18 -4.03 -0.05 -32.44 16 16 N -0.71 -31.58 5.07 -461.40 -2.34 -33.92 16 17 C 0.29 15.50 2.56 44.25 0.11 15.62 16 18 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 19 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 20 C -0.55 -29.46 8.73 25.60 0.22 -29.23 16 21 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 22 C 0.01 0.79 5.30 84.65 0.45 1.23 16 23 N -0.92 -53.13 11.32 21.45 0.24 -52.88 16 24 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.54 6.56 -2.39 -0.02 0.52 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 0.98 6.09 -2.39 -0.01 0.97 16 38 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 39 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.12 5.08 5.79 -2.91 -0.02 5.06 16 43 H 0.42 12.22 8.36 -92.71 -0.78 11.44 16 44 H 0.40 15.00 8.56 -92.71 -0.79 14.21 16 45 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 48 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.18 387.61 2.65 -67.54 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.60 Total: 36.79 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.94 Total: 4.50 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.78 Total: -112.04 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.94 Total: -41.20 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -70.18 2.65 -67.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594148296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.725 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds