Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.42902 * 113.99874 * 270.00076 * 4 2 1 6 6 C 1.50698 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.38657 * 120.78929 * 269.71936 * 6 5 4 8 8 C 1.38198 * 119.16146 * 179.79725 * 7 6 5 9 9 N 1.31867 * 120.76444 * 0.48907 * 8 7 6 10 10 C 1.31870 * 121.72763 * 359.73800 * 9 8 7 11 11 C 1.38198 * 120.76303 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.21280 * 119.99966 * 244.99884 * 12 2 1 14 14 N 1.34774 * 120.00093 * 64.99522 * 12 2 1 15 15 C 1.46500 * 120.00022 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47078 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47068 * 299.99634 * 16 15 14 18 18 C 1.52999 * 109.47387 * 60.00025 * 16 15 14 19 19 C 1.53002 * 109.47280 * 180.02562 * 16 15 14 20 20 C 1.50696 * 109.47344 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99611 * 0.02562 * 20 19 16 22 22 C 1.37875 * 119.99982 * 179.97438 * 20 19 16 23 23 N 1.31508 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99689 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47145 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46801 * 120.00221 * 24 22 20 27 27 H 1.48502 * 109.46783 * 239.99720 * 24 22 20 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47082 * 300.00110 * 5 4 2 32 32 H 1.08997 * 109.47374 * 59.99540 * 5 4 2 33 33 H 1.08002 * 120.41827 * 359.97438 * 7 6 5 34 34 H 1.08009 * 119.61982 * 180.20412 * 8 7 6 35 35 H 1.08002 * 119.61566 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.41809 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99866 * 0.02562 * 14 12 2 38 38 H 1.08999 * 109.47229 * 300.00134 * 15 14 12 39 39 H 1.08996 * 109.47573 * 60.00199 * 15 14 12 40 40 H 1.09001 * 109.46690 * 60.00154 * 17 16 15 41 41 H 1.09000 * 109.47625 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47159 * 300.00461 * 17 16 15 43 43 H 1.08995 * 109.47393 * 59.99705 * 18 16 15 44 44 H 1.09000 * 109.47386 * 180.02562 * 18 16 15 45 45 H 1.09001 * 109.46962 * 299.99684 * 18 16 15 46 46 H 1.09008 * 109.46873 * 299.99790 * 19 16 15 47 47 H 1.08997 * 109.47047 * 59.99479 * 19 16 15 48 48 H 0.97002 * 120.00237 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7015 -0.6283 3.4610 7 6 1.8150 -1.2045 4.3580 8 6 2.3115 -1.9451 5.4138 9 7 3.6109 -2.0983 5.5782 10 6 4.4830 -1.5611 4.7477 11 6 4.0604 -0.8114 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7466 -1.1215 14 7 1.7918 -0.1942 -2.4520 15 6 2.2796 -0.8850 -3.6482 16 6 1.8754 -0.0945 -4.8942 17 6 0.3507 0.0163 -4.9555 18 6 2.4864 1.3067 -4.8297 19 6 2.3843 -0.8163 -6.1436 20 6 1.9857 -0.0380 -7.3709 21 1 1.4257 0.8800 -7.2698 22 6 2.3367 -0.4972 -8.6226 23 7 3.0190 -1.6147 -8.7456 24 14 1.8431 0.4680 -10.1439 25 1 1.0877 1.6801 -9.7375 26 1 3.0615 0.8718 -10.8908 27 1 0.9884 -0.3805 -11.0127 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9319 0.9513 2.0450 32 1 1.2539 0.6546 2.5588 33 1 0.7498 -1.0784 4.2315 34 1 1.6275 -2.4000 6.1151 35 1 5.5398 -1.7087 4.9146 36 1 4.7796 -0.3735 2.9900 37 1 1.2957 0.6348 -2.5391 38 1 3.3659 -0.9636 -3.6048 39 1 1.8447 -1.8834 -3.6940 40 1 -0.0123 0.5303 -4.0655 41 1 0.0626 0.5799 -5.8429 42 1 -0.0846 -0.9819 -5.0015 43 1 3.5726 1.2278 -4.7861 44 1 2.1981 1.8701 -5.7172 45 1 2.1234 1.8208 -3.9397 46 1 3.4707 -0.8956 -6.1002 47 1 1.9487 -1.8144 -6.1893 48 1 3.2663 -1.9376 -9.6262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601579067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = -64.670497 kcal Electronic energy + Delta-G solvation = -26344.583960 eV Core-core repulsion = 22592.122527 eV Total energy + Delta-G solvation = -3752.461433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54682 -39.93396 -38.12097 -36.92796 -33.89433 -33.60318 -32.25558 -31.54141 -31.17504 -27.24921 -27.18738 -26.56548 -26.41044 -24.21617 -23.79512 -22.68385 -22.32292 -20.26918 -18.54544 -17.63467 -17.17316 -16.81923 -16.61508 -16.30337 -15.93858 -15.63154 -15.26230 -14.77121 -14.52273 -14.24946 -14.11781 -13.98455 -13.68503 -13.40524 -13.15634 -13.02293 -12.77662 -12.68192 -12.36326 -12.10469 -12.09614 -11.88573 -11.56608 -11.19420 -11.06065 -10.86694 -10.68654 -10.45013 -10.28172 -10.26771 -10.08612 -9.92399 -9.82024 -9.60099 -9.47190 -9.17506 -8.94618 -8.78698 -8.39099 -6.02705 -4.04233 0.78610 0.81669 2.71226 2.84344 3.27906 3.36116 3.38064 3.47666 3.81204 4.14508 4.31627 4.33017 4.42534 4.56380 4.68203 4.70595 4.77251 4.80631 4.92677 4.98383 5.26871 5.28149 5.32771 5.36530 5.44725 5.47420 5.57898 5.60575 5.69636 5.80474 5.95398 6.11138 6.16724 6.23712 6.34156 6.34825 6.49957 6.58130 6.65882 6.74399 7.01382 7.02915 7.08329 7.60895 7.63394 7.67148 7.72856 7.95822 8.34927 8.38871 9.00795 9.59083 11.08705 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.001980 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.705518 B =14137.878938 C =14496.040122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.507 3.493 13 O -0.523 6.523 14 N -0.719 5.719 15 C 0.129 3.871 16 C -0.072 4.072 17 C -0.127 4.127 18 C -0.127 4.127 19 C 0.036 3.964 20 C -0.511 4.511 21 H 0.060 0.940 22 C 0.055 3.945 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 7.267 25.121 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.172 4.172 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.291 3.709 13 O -0.398 6.398 14 N -0.372 5.372 15 C 0.007 3.993 16 C -0.073 4.073 17 C -0.184 4.184 18 C -0.185 4.185 19 C -0.002 4.002 20 C -0.549 4.549 21 H 0.078 0.922 22 C -0.146 4.146 23 N -0.533 5.533 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.452 5.696 25.772 26.618 hybrid contribution -0.811 1.591 -1.793 2.530 sum -4.263 7.287 23.979 25.421 Atomic orbital electron populations 1.22234 0.93433 1.04057 1.03104 1.21960 0.95191 0.96313 0.85672 0.89624 1.88141 1.86602 1.33429 1.18426 1.21416 1.00082 0.91686 0.84711 1.19967 0.93709 0.96789 0.94701 1.22081 1.00985 0.98287 0.95802 1.22775 0.91986 0.95344 0.96103 1.67670 1.03403 1.19557 1.28625 1.22794 0.99764 0.93019 0.90450 1.22127 0.95896 0.99806 0.99035 1.20241 0.80478 0.85844 0.84311 1.90733 1.39512 1.23121 1.86436 1.46132 1.57603 1.27788 1.05700 1.21651 0.99106 0.95925 0.82639 1.20912 0.95649 0.95684 0.95042 1.21766 0.95168 1.01292 1.00215 1.21765 1.00203 0.96300 1.00184 1.19097 0.96373 0.95273 0.89452 1.21210 1.34848 1.08253 0.90638 0.92192 1.25026 0.95356 0.95076 0.99125 1.69971 1.38854 1.21089 1.23375 0.86586 0.78232 0.80050 0.83402 1.19811 1.21141 1.21129 0.91374 0.90635 0.90899 0.91715 0.91709 0.84601 0.82559 0.82474 0.84484 0.76718 0.91738 0.91707 0.95302 0.91379 0.93301 0.93323 0.91369 0.95310 0.96322 0.96306 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.07 0.73 3.13 -27.88 -0.09 0.64 16 3 H 0.09 0.65 7.79 -51.93 -0.40 0.24 16 4 O -0.35 -4.21 9.51 -55.09 -0.52 -4.73 16 5 C 0.10 0.80 5.92 36.00 0.21 1.02 16 6 C -0.04 -0.40 5.55 -104.32 -0.58 -0.98 16 7 C -0.15 -1.25 9.82 -39.44 -0.39 -1.64 16 8 C 0.09 0.82 11.18 -17.55 -0.20 0.62 16 9 N -0.48 -5.04 10.36 -13.25 -0.14 -5.18 16 10 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 11 C -0.15 -1.34 9.82 -39.44 -0.39 -1.73 16 12 C 0.51 7.48 7.18 -10.99 -0.08 7.41 16 13 O -0.52 -10.33 16.51 -14.30 -0.24 -10.56 16 14 N -0.72 -9.86 4.92 -60.30 -0.30 -10.16 16 15 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 16 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 17 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 18 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 19 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 20 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 21 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 22 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 23 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 24 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 29 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 32 H 0.06 0.38 7.83 -51.93 -0.41 -0.02 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.40 4.37 5.95 -40.82 -0.24 4.13 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 41 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 45 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 46 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.06 392.62 -8.66 -42.72 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.78 Total: 0.79 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.32 Total: -9.28 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.30 Total: -40.78 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.76 Total: -15.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.06 -8.66 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.946 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds