Wall clock time and date at job start Tue Mar 31 2020 12:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.42902 * 113.99874 * 270.00076 * 4 2 1 6 6 C 1.50698 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.38657 * 120.78929 * 269.71936 * 6 5 4 8 8 C 1.38198 * 119.16146 * 179.79725 * 7 6 5 9 9 N 1.31867 * 120.76444 * 0.48907 * 8 7 6 10 10 C 1.31870 * 121.72763 * 359.73800 * 9 8 7 11 11 C 1.38198 * 120.76303 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.21280 * 119.99966 * 244.99884 * 12 2 1 14 14 N 1.34774 * 120.00093 * 64.99522 * 12 2 1 15 15 C 1.46500 * 120.00022 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47078 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47068 * 299.99634 * 16 15 14 18 18 C 1.52999 * 109.47387 * 60.00025 * 16 15 14 19 19 C 1.53002 * 109.47280 * 180.02562 * 16 15 14 20 20 C 1.50696 * 109.47344 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99611 * 0.02562 * 20 19 16 22 22 C 1.37875 * 119.99982 * 179.97438 * 20 19 16 23 23 N 1.31508 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99689 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47145 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46801 * 120.00221 * 24 22 20 27 27 H 1.48502 * 109.46783 * 239.99720 * 24 22 20 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47082 * 300.00110 * 5 4 2 32 32 H 1.08997 * 109.47374 * 59.99540 * 5 4 2 33 33 H 1.08002 * 120.41827 * 359.97438 * 7 6 5 34 34 H 1.08009 * 119.61982 * 180.20412 * 8 7 6 35 35 H 1.08002 * 119.61566 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.41809 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99866 * 0.02562 * 14 12 2 38 38 H 1.08999 * 109.47229 * 300.00134 * 15 14 12 39 39 H 1.08996 * 109.47573 * 60.00199 * 15 14 12 40 40 H 1.09001 * 109.46690 * 60.00154 * 17 16 15 41 41 H 1.09000 * 109.47625 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47159 * 300.00461 * 17 16 15 43 43 H 1.08995 * 109.47393 * 59.99705 * 18 16 15 44 44 H 1.09000 * 109.47386 * 180.02562 * 18 16 15 45 45 H 1.09001 * 109.46962 * 299.99684 * 18 16 15 46 46 H 1.09008 * 109.46873 * 299.99790 * 19 16 15 47 47 H 1.08997 * 109.47047 * 59.99479 * 19 16 15 48 48 H 0.97002 * 120.00237 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7015 -0.6283 3.4610 7 6 1.8150 -1.2045 4.3580 8 6 2.3115 -1.9451 5.4138 9 7 3.6109 -2.0983 5.5782 10 6 4.4830 -1.5611 4.7477 11 6 4.0604 -0.8114 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7466 -1.1215 14 7 1.7918 -0.1942 -2.4520 15 6 2.2796 -0.8850 -3.6482 16 6 1.8754 -0.0945 -4.8942 17 6 0.3507 0.0163 -4.9555 18 6 2.4864 1.3067 -4.8297 19 6 2.3843 -0.8163 -6.1436 20 6 1.9857 -0.0380 -7.3709 21 1 1.4257 0.8800 -7.2698 22 6 2.3367 -0.4972 -8.6226 23 7 3.0190 -1.6147 -8.7456 24 14 1.8431 0.4680 -10.1439 25 1 1.0877 1.6801 -9.7375 26 1 3.0615 0.8718 -10.8908 27 1 0.9884 -0.3805 -11.0127 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9319 0.9513 2.0450 32 1 1.2539 0.6546 2.5588 33 1 0.7498 -1.0784 4.2315 34 1 1.6275 -2.4000 6.1151 35 1 5.5398 -1.7087 4.9146 36 1 4.7796 -0.3735 2.9900 37 1 1.2957 0.6348 -2.5391 38 1 3.3659 -0.9636 -3.6048 39 1 1.8447 -1.8834 -3.6940 40 1 -0.0123 0.5303 -4.0655 41 1 0.0626 0.5799 -5.8429 42 1 -0.0846 -0.9819 -5.0015 43 1 3.5726 1.2278 -4.7861 44 1 2.1981 1.8701 -5.7172 45 1 2.1234 1.8208 -3.9397 46 1 3.4707 -0.8956 -6.1002 47 1 1.9487 -1.8144 -6.1893 48 1 3.2663 -1.9376 -9.6262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601579067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:06 Heat of formation + Delta-G solvation = -86.401666 kcal Electronic energy + Delta-G solvation = -26345.526294 eV Core-core repulsion = 22592.122527 eV Total energy + Delta-G solvation = -3753.403767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28469 -40.96547 -39.16105 -38.26377 -35.31031 -34.48963 -33.95737 -32.15482 -32.03596 -29.09630 -27.94279 -27.87141 -27.72817 -25.46910 -24.43212 -24.23686 -22.96289 -21.43593 -19.95567 -18.53625 -18.38605 -18.03081 -17.50685 -17.41738 -16.76270 -16.52589 -16.49975 -16.23190 -15.77259 -15.42932 -15.00058 -14.83661 -14.72189 -14.54436 -14.39595 -14.17642 -13.93265 -13.86728 -13.55534 -13.30968 -12.97387 -12.87707 -12.69033 -12.58242 -12.49207 -12.33304 -12.28359 -12.20771 -11.94562 -11.53090 -11.17831 -10.98387 -10.86214 -10.75252 -10.52420 -10.47836 -10.46191 -10.09774 -10.09345 -8.13930 -6.21865 0.13405 0.19199 1.42211 1.43222 1.54948 1.58589 1.89489 2.44411 2.71378 3.10366 3.20695 3.57240 3.63258 3.76603 3.78738 3.96044 3.98629 4.06165 4.11475 4.12686 4.20136 4.23424 4.40175 4.44027 4.68863 4.69532 4.71420 4.74646 4.77424 4.85125 4.87902 4.97983 4.98469 5.11247 5.14532 5.23870 5.34253 5.39216 5.46386 5.51903 5.55155 5.57752 5.74940 5.81436 5.90497 6.01805 6.30386 6.59446 6.94058 6.99408 7.25562 7.46104 8.98778 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.001980 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.705518 B =14137.878938 C =14496.040122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.125 0.875 4 O -0.383 6.383 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.153 4.153 8 C 0.083 3.917 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.161 4.161 12 C 0.502 3.498 13 O -0.582 6.582 14 N -0.702 5.702 15 C 0.142 3.858 16 C -0.064 4.064 17 C -0.122 4.122 18 C -0.122 4.122 19 C 0.038 3.962 20 C -0.511 4.511 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.940 5.940 24 Si 0.960 3.040 25 H -0.254 1.254 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.147 0.853 37 H 0.416 0.584 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.074 0.926 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 10.585 26.365 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.142 0.858 4 O -0.302 6.302 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.181 4.181 12 C 0.289 3.711 13 O -0.461 6.461 14 N -0.356 5.356 15 C 0.018 3.982 16 C -0.064 4.064 17 C -0.180 4.180 18 C -0.180 4.180 19 C 0.001 3.999 20 C -0.549 4.549 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.581 5.581 24 Si 0.786 3.214 25 H -0.178 1.178 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.178 0.822 34 H 0.196 0.804 35 H 0.191 0.809 36 H 0.164 0.836 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.712 9.074 27.032 29.081 hybrid contribution -0.087 0.503 -2.112 2.172 sum -5.799 9.577 24.921 27.320 Atomic orbital electron populations 1.22260 0.91254 1.03412 1.05466 1.22030 0.96537 0.96852 0.82947 0.85778 1.88099 1.87036 1.35462 1.19619 1.21629 1.02018 0.91230 0.83144 1.20292 0.93922 0.97219 0.95411 1.22375 1.02157 0.97518 0.95211 1.23237 0.91867 0.95430 0.96832 1.67684 1.04433 1.20516 1.29537 1.23124 1.00598 0.93114 0.90568 1.22343 0.96533 0.99977 0.99206 1.21232 0.79084 0.85170 0.85605 1.90711 1.42195 1.25947 1.87293 1.45860 1.57291 1.28019 1.04480 1.21199 0.97769 0.95241 0.83973 1.20708 0.97108 0.96141 0.92485 1.21709 0.93280 1.01038 1.01932 1.21707 0.99477 0.94915 1.01864 1.18990 0.94101 0.94310 0.92543 1.21632 1.33742 1.08419 0.91089 0.90654 1.25991 0.95598 0.96094 1.02846 1.70134 1.40759 1.23196 1.24007 0.85465 0.77804 0.79037 0.79138 1.17778 1.21198 1.21201 0.88422 0.88862 0.93067 0.90270 0.88759 0.82245 0.80360 0.80927 0.83568 0.74527 0.93827 0.93918 0.90674 0.92479 0.94583 0.94537 0.92475 0.90698 0.99751 0.99780 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.48 71.98 0.68 -1.31 16 2 C 0.08 1.35 3.13 29.85 0.09 1.44 16 3 H 0.12 1.23 7.79 -2.39 -0.02 1.21 16 4 O -0.38 -8.41 9.51 -129.99 -1.24 -9.65 16 5 C 0.10 1.28 5.92 71.24 0.42 1.70 16 6 C -0.06 -1.01 5.55 -19.67 -0.11 -1.11 16 7 C -0.15 -2.25 9.82 22.36 0.22 -2.03 16 8 C 0.08 1.35 11.18 84.68 0.95 2.30 16 9 N -0.51 -10.55 10.36 -195.85 -2.03 -12.58 16 10 C 0.08 1.49 11.18 84.68 0.95 2.44 16 11 C -0.16 -2.80 9.82 22.36 0.22 -2.58 16 12 C 0.50 14.12 7.18 87.66 0.63 14.75 16 13 O -0.58 -23.46 16.51 15.96 0.26 -23.19 16 14 N -0.70 -17.79 4.92 -463.07 -2.28 -20.07 16 15 C 0.14 4.97 4.56 86.38 0.39 5.36 16 16 C -0.06 -2.32 0.54 -52.18 -0.03 -2.34 16 17 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 18 C -0.12 -3.83 8.05 71.98 0.58 -3.26 16 19 C 0.04 1.92 4.04 29.85 0.12 2.04 16 20 C -0.51 -26.91 7.65 25.60 0.20 -26.71 16 21 H 0.08 3.67 5.68 -2.91 -0.02 3.66 16 22 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 23 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 24 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 25 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 28 H 0.10 0.64 7.87 -2.39 -0.02 0.62 16 29 H 0.09 0.79 7.92 -2.39 -0.02 0.77 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.81 8.05 -2.39 -0.02 0.79 16 32 H 0.09 0.68 7.83 -2.39 -0.02 0.66 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.42 7.29 5.95 -92.71 -0.55 6.74 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 41 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 45 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 46 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 47 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -79.52 392.62 3.78 -75.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.39 Total: 14.01 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 6.35 Total: -12.60 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -4.02 Total: -89.43 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.97 Total: -32.84 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -79.52 3.78 -75.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.662 kcal (2) G-P(sol) polarization free energy of solvation -79.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds