Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09005 * 109.46919 * 2 1 4 4 C 1.50700 * 109.46950 * 120.00299 * 2 1 3 5 5 H 1.07999 * 120.00377 * 119.99908 * 4 2 1 6 6 C 1.37885 * 119.99711 * 299.99627 * 4 2 1 7 7 N 1.31510 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99909 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47054 * 89.99957 * 8 6 4 10 10 H 1.48493 * 109.47080 * 210.00335 * 8 6 4 11 11 H 1.48502 * 109.47056 * 330.00135 * 8 6 4 12 12 N 1.46500 * 109.46901 * 239.99999 * 2 1 3 13 13 C 1.46500 * 120.00063 * 299.99763 * 12 2 1 14 14 C 1.34779 * 119.99525 * 120.00254 * 12 2 1 15 15 O 1.21277 * 120.00174 * 359.97438 * 14 12 2 16 16 C 1.50705 * 119.99728 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46912 * 320.00429 * 16 14 12 18 18 N 1.46892 * 109.47343 * 199.99944 * 16 14 12 19 19 C 1.53007 * 109.46842 * 79.99991 * 16 14 12 20 20 H 1.09001 * 109.47304 * 299.99752 * 19 16 14 21 21 C 1.53005 * 109.46992 * 180.02562 * 19 16 14 22 22 O 1.42899 * 109.47032 * 60.00121 * 19 16 14 23 23 C 1.42903 * 113.99629 * 209.99942 * 22 19 16 24 24 C 1.50701 * 109.46878 * 179.97438 * 23 22 19 25 25 C 1.38233 * 120.00099 * 269.72733 * 24 23 22 26 26 C 1.38239 * 119.99655 * 179.76882 * 25 24 23 27 27 C 1.38230 * 120.00228 * 0.50243 * 26 25 24 28 28 C 1.38238 * 119.99995 * 359.75228 * 27 26 25 29 29 C 1.38238 * 120.00072 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46865 * 299.99997 * 1 2 3 32 32 H 1.09002 * 109.46822 * 59.99892 * 1 2 3 33 33 H 0.97006 * 120.00040 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47172 * 269.99956 * 13 12 2 35 35 H 1.08999 * 109.47297 * 30.00348 * 13 12 2 36 36 H 1.09004 * 109.46908 * 150.00132 * 13 12 2 37 37 H 1.00899 * 111.00454 * 176.04713 * 18 16 14 38 38 H 1.00906 * 111.00015 * 300.00432 * 18 16 14 39 39 H 1.09006 * 109.46899 * 60.00063 * 21 19 16 40 40 H 1.08994 * 109.46766 * 179.97438 * 21 19 16 41 41 H 1.09001 * 109.46830 * 299.99965 * 21 19 16 42 42 H 1.09002 * 109.47382 * 59.99956 * 23 22 19 43 43 H 1.09001 * 109.46938 * 299.99942 * 23 22 19 44 44 H 1.08003 * 119.99927 * 359.97438 * 25 24 23 45 45 H 1.08000 * 119.99431 * 180.23215 * 26 25 24 46 46 H 1.07997 * 120.00220 * 179.73036 * 27 26 25 47 47 H 1.08002 * 119.99952 * 179.97438 * 28 27 26 48 48 H 1.07991 * 120.00062 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4119 10 1 1.3444 -0.9490 5.1122 11 1 2.4879 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7933 -0.0355 -2.0833 15 8 3.0859 1.1257 -1.8915 16 6 3.2961 -0.7461 -3.3135 17 1 3.5855 -1.7640 -3.0524 18 7 4.4594 -0.0290 -3.8521 19 6 2.1882 -0.7857 -4.3682 20 1 1.3249 -1.3178 -3.9686 21 6 2.6984 -1.5076 -5.6170 22 8 1.8086 0.5488 -4.7105 23 6 0.4422 0.6806 -5.1077 24 6 0.1535 2.1210 -5.4435 25 6 -0.2956 2.9832 -4.4607 26 6 -0.5559 4.3057 -4.7678 27 6 -0.3771 4.7634 -6.0598 28 6 0.0670 3.8999 -7.0438 29 6 0.3327 2.5788 -6.7355 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7082 1.1609 3.4845 34 1 2.4158 -2.7377 -0.9717 35 1 0.6905 -2.3002 -0.9847 36 1 1.6238 -2.2852 -2.5002 37 1 4.8546 -0.5207 -4.6396 38 1 4.2166 0.9180 -4.1019 39 1 2.9877 -2.5255 -5.3554 40 1 1.9091 -1.5362 -6.3680 41 1 3.5619 -0.9758 -6.0167 42 1 -0.2058 0.3612 -4.2915 43 1 0.2569 0.0587 -5.9835 44 1 -0.4399 2.6244 -3.4523 45 1 -0.9031 4.9802 -3.9991 46 1 -0.5846 5.7955 -6.3006 47 1 0.2063 4.2574 -8.0533 48 1 0.6792 1.9041 -7.5043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602592649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = -49.441749 kcal Electronic energy + Delta-G solvation = -28160.644694 eV Core-core repulsion = 24408.843629 eV Total energy + Delta-G solvation = -3751.801065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.83828 -39.18069 -37.74046 -35.36708 -34.53792 -32.74810 -31.83279 -30.92317 -30.02884 -29.53848 -26.52840 -26.08190 -25.78419 -25.13921 -22.61064 -21.94692 -21.36295 -20.47502 -18.32773 -17.39826 -16.98007 -16.36019 -16.23834 -15.81631 -15.56994 -15.40524 -14.86333 -14.51699 -14.44830 -14.07478 -13.87417 -13.48468 -13.40927 -13.20657 -12.99313 -12.60401 -12.54817 -12.45856 -12.18350 -12.04710 -11.76605 -11.55123 -11.50519 -11.12470 -11.04497 -10.98957 -10.85574 -10.79582 -10.66376 -10.20552 -10.13151 -9.71793 -9.13959 -8.94273 -8.93048 -8.85456 -8.42980 -8.30416 -7.50023 -6.03392 -4.10819 1.22312 1.38600 3.29883 3.35502 3.36718 3.39599 3.52156 3.92744 4.02971 4.43150 4.63750 4.72859 4.83020 4.88131 4.96704 5.00486 5.04097 5.07769 5.17459 5.27456 5.30880 5.40198 5.46109 5.49643 5.58381 5.61309 5.62331 5.75604 5.91107 5.93770 6.02154 6.04861 6.29367 6.39308 6.48487 6.58500 6.76616 6.82368 6.95045 7.07689 7.09744 7.27921 7.50369 7.59467 7.71217 7.76387 8.06362 8.24810 8.60968 8.89575 9.18814 9.55888 11.01843 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003790 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.614817 B = 7385.784442 C = 8678.906847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.261 3.739 3 H 0.062 0.938 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.517 3.483 15 O -0.531 6.531 16 C 0.080 3.920 17 H 0.105 0.895 18 N -0.821 5.821 19 C 0.051 3.949 20 H 0.071 0.929 21 C -0.174 4.174 22 O -0.363 6.363 23 C 0.105 3.895 24 C -0.087 4.087 25 C -0.089 4.089 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.129 4.129 29 C -0.101 4.101 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.009 0.991 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.337 0.663 38 H 0.358 0.642 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -2.186 -19.953 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.302 3.698 15 O -0.407 6.407 16 C -0.036 4.036 17 H 0.123 0.877 18 N -0.352 5.352 19 C -0.009 4.009 20 H 0.089 0.911 21 C -0.232 4.232 22 O -0.282 6.282 23 C 0.028 3.972 24 C -0.088 4.088 25 C -0.107 4.107 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.147 4.147 29 C -0.119 4.119 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.174 0.826 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.794 -1.396 -18.950 19.206 hybrid contribution -0.469 -0.810 0.028 0.936 sum -3.263 -2.206 -18.922 19.328 Atomic orbital electron populations 1.22087 0.98458 0.99148 1.00672 1.18876 0.90601 0.94507 0.79964 0.91980 1.21337 1.31601 1.12926 0.90344 0.92335 1.24889 0.94981 0.95001 0.98931 1.69878 1.36467 1.22702 1.23651 0.86507 0.78672 0.79855 0.82415 1.20604 1.21191 1.19966 1.48181 1.49691 1.11358 1.23798 1.21620 1.01751 0.83827 0.98882 1.19953 0.78987 0.87130 0.83708 1.90628 1.56986 1.16866 1.76183 1.21597 0.89783 0.99237 0.93025 0.87674 1.58520 1.30007 1.07440 1.39272 1.22958 0.98440 0.84402 0.95108 0.91150 1.22295 1.02200 1.00656 0.98065 1.88034 1.26187 1.26889 1.87083 1.21334 0.83991 0.93027 0.98811 1.19573 1.00379 0.94979 0.93825 1.21205 0.96972 0.93410 0.99141 1.21197 1.00281 0.95748 0.96695 1.21179 0.99358 0.99555 0.93350 1.21087 1.00562 0.93693 0.99323 1.20994 0.99132 0.95873 0.95921 0.95247 0.88848 0.97228 0.92767 0.93249 0.90855 0.93377 0.84965 0.82644 0.91179 0.92120 0.91688 0.92331 0.92840 0.85558 0.85779 0.86158 0.86169 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.73 2.64 -69.08 -0.18 6.55 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.60 -12.80 2.75 -175.25 -0.48 -13.28 16 13 C 0.08 1.38 9.12 59.85 0.55 1.93 16 14 C 0.52 11.00 6.58 -10.98 -0.07 10.93 16 15 O -0.53 -13.69 15.58 5.56 0.09 -13.61 16 16 C 0.08 1.23 2.25 -68.86 -0.15 1.08 16 17 H 0.11 1.45 7.21 -51.93 -0.37 1.08 16 18 N -0.82 -12.43 8.87 -5.65 -0.05 -12.48 16 19 C 0.05 0.65 2.26 -26.73 -0.06 0.59 16 20 H 0.07 0.87 5.97 -51.93 -0.31 0.56 16 21 C -0.17 -1.61 9.19 37.16 0.34 -1.26 16 22 O -0.36 -5.37 9.01 -35.23 -0.32 -5.68 16 23 C 0.10 1.34 5.87 36.01 0.21 1.55 16 24 C -0.09 -1.17 5.51 -104.62 -0.58 -1.74 16 25 C -0.09 -1.26 9.70 -39.58 -0.38 -1.65 16 26 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 29 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 30 H 0.03 0.64 6.66 -51.93 -0.35 0.29 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 36 H 0.05 0.61 4.76 -51.93 -0.25 0.37 16 37 H 0.34 3.90 7.40 -39.29 -0.29 3.61 16 38 H 0.36 5.99 8.03 -39.29 -0.32 5.68 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 41 H 0.06 0.59 6.76 -51.93 -0.35 0.24 16 42 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 43 H 0.05 0.55 7.82 -51.93 -0.41 0.14 16 44 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -33.12 384.54 -8.71 -41.84 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.39 Total: 10.86 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.96 Total: -5.00 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.09 Total: -50.51 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.23 Total: -19.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.12 -8.71 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602592649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.605 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds