Wall clock time and date at job start Tue Mar 31 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47248 * 2 1 4 4 C 1.50702 * 109.46917 * 240.00046 * 2 1 3 5 5 H 1.07997 * 120.00476 * 239.99369 * 4 2 1 6 6 C 1.37880 * 119.99856 * 60.00377 * 4 2 1 7 7 N 1.31514 * 120.00101 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99844 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47023 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46832 * 119.99770 * 8 6 4 11 11 H 1.48503 * 109.46686 * 239.99379 * 8 6 4 12 12 N 1.46500 * 109.47363 * 120.00486 * 2 1 3 13 13 C 1.46500 * 120.00063 * 59.99584 * 12 2 1 14 14 C 1.34779 * 119.99525 * 240.00075 * 12 2 1 15 15 O 1.21277 * 120.00174 * 359.97438 * 14 12 2 16 16 C 1.50705 * 119.99728 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46912 * 320.00429 * 16 14 12 18 18 N 1.46892 * 109.47343 * 199.99944 * 16 14 12 19 19 C 1.53007 * 109.46842 * 79.99991 * 16 14 12 20 20 H 1.09001 * 109.47304 * 299.99752 * 19 16 14 21 21 C 1.53005 * 109.46992 * 180.02562 * 19 16 14 22 22 O 1.42899 * 109.47032 * 60.00121 * 19 16 14 23 23 C 1.42903 * 113.99629 * 209.99942 * 22 19 16 24 24 C 1.50701 * 109.46878 * 179.97438 * 23 22 19 25 25 C 1.38233 * 120.00099 * 269.72733 * 24 23 22 26 26 C 1.38239 * 119.99655 * 179.76882 * 25 24 23 27 27 C 1.38230 * 120.00228 * 0.50243 * 26 25 24 28 28 C 1.38238 * 119.99995 * 359.75228 * 27 26 25 29 29 C 1.38238 * 120.00072 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46992 * 299.99747 * 1 2 3 31 31 H 1.08991 * 109.46873 * 60.00012 * 1 2 3 32 32 H 1.09001 * 109.46877 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00396 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47172 * 269.99956 * 13 12 2 35 35 H 1.08999 * 109.47297 * 30.00348 * 13 12 2 36 36 H 1.09004 * 109.46908 * 150.00132 * 13 12 2 37 37 H 1.00899 * 111.00454 * 176.04713 * 18 16 14 38 38 H 1.00906 * 111.00015 * 300.00432 * 18 16 14 39 39 H 1.09006 * 109.46899 * 60.00063 * 21 19 16 40 40 H 1.08994 * 109.46766 * 179.97438 * 21 19 16 41 41 H 1.09001 * 109.46830 * 299.99965 * 21 19 16 42 42 H 1.09002 * 109.47382 * 59.99956 * 23 22 19 43 43 H 1.09001 * 109.46938 * 299.99942 * 23 22 19 44 44 H 1.08003 * 119.99927 * 359.97438 * 25 24 23 45 45 H 1.08000 * 119.99431 * 180.23215 * 26 25 24 46 46 H 1.07997 * 120.00220 * 179.73036 * 27 26 25 47 47 H 1.08002 * 119.99952 * 179.97438 * 28 27 26 48 48 H 1.07991 * 120.00062 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2855 -3.6039 10 1 1.1677 -1.5864 -4.8165 11 1 3.1472 -0.1855 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0866 1.1253 1.8911 16 6 3.2953 -0.7460 3.3140 17 1 2.5057 -1.3823 3.7136 18 7 3.6853 0.2445 4.3262 19 6 4.5070 -1.6056 2.9481 20 1 4.2176 -2.3406 2.1970 21 6 5.0162 -2.3273 4.1974 22 8 5.5421 -0.7713 2.4241 23 6 6.3839 -1.4202 1.4690 24 6 7.4334 -0.4529 0.9853 25 6 7.1871 0.3377 -0.1216 26 6 8.1480 1.2284 -0.5624 27 6 9.3591 1.3211 0.0975 28 6 9.6074 0.5268 1.2012 29 6 8.6444 -0.3600 1.6454 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7088 1.1615 -3.4843 34 1 0.7377 -2.1445 1.9993 35 1 1.5295 -2.5969 0.4707 36 1 2.4630 -2.5820 1.9862 37 1 3.9648 -0.2063 5.1845 38 1 4.4166 0.8471 3.9795 39 1 4.2264 -2.9637 4.5967 40 1 5.8791 -2.9400 3.9367 41 1 5.3055 -1.5925 4.9488 42 1 5.7830 -1.7562 0.6239 43 1 6.8676 -2.2787 1.9350 44 1 6.2426 0.2618 -0.6400 45 1 7.9540 1.8487 -1.4249 46 1 10.1114 2.0139 -0.2495 47 1 10.5539 0.5989 1.7165 48 1 8.8386 -0.9808 2.5074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602592650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:12 Heat of formation + Delta-G solvation = -72.722593 kcal Electronic energy + Delta-G solvation = -28391.862986 eV Core-core repulsion = 24639.052388 eV Total energy + Delta-G solvation = -3752.810598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18194 -40.25799 -38.95659 -37.14284 -35.80512 -34.71498 -32.80319 -31.84019 -31.49390 -30.92094 -27.76949 -27.41652 -27.27790 -26.89921 -23.54463 -23.39262 -22.29921 -21.92375 -19.95158 -18.77266 -18.36547 -17.97091 -17.34582 -17.23898 -16.86595 -16.54942 -16.27917 -15.97730 -15.67617 -15.33981 -15.26380 -14.73015 -14.49956 -14.33736 -14.32702 -13.94183 -13.77756 -13.53880 -13.46177 -13.20857 -13.13419 -13.03108 -12.90088 -12.83597 -12.72131 -12.63123 -12.21238 -12.13282 -12.06611 -11.95397 -11.79239 -11.18772 -10.77268 -10.60099 -10.41971 -9.87660 -9.82496 -9.58711 -9.27191 -8.15439 -6.31683 0.29212 0.44460 1.36593 1.38417 1.49076 1.86691 2.27931 2.45021 2.52996 3.05033 3.12331 3.58336 3.71096 3.80032 3.85146 3.95225 4.05510 4.08957 4.22988 4.24511 4.32319 4.35688 4.38207 4.45764 4.59138 4.71972 4.72209 4.76565 4.81662 4.88017 4.90363 5.01460 5.02946 5.07286 5.09671 5.24147 5.46920 5.49487 5.55795 5.60300 5.64045 5.67695 6.00553 6.05087 6.07698 6.16515 6.21493 6.62345 6.76753 6.89307 7.33899 7.56205 8.89222 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.009327 B = 0.005307 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.378581 B = 5275.078053 C = 7276.031635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.265 3.735 3 H 0.001 0.999 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.603 5.603 13 C 0.074 3.926 14 C 0.504 3.496 15 O -0.591 6.591 16 C 0.091 3.909 17 H 0.135 0.865 18 N -0.828 5.828 19 C 0.050 3.950 20 H 0.071 0.929 21 C -0.164 4.164 22 O -0.388 6.388 23 C 0.107 3.893 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.137 4.137 27 C -0.116 4.116 28 C -0.124 4.124 29 C -0.101 4.101 30 H 0.016 0.984 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.359 0.641 38 H 0.347 0.653 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.951 -10.418 12.525 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.019 0.981 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.335 5.335 13 C -0.068 4.068 14 C 0.292 3.708 15 O -0.471 6.471 16 C -0.025 4.025 17 H 0.153 0.847 18 N -0.361 5.361 19 C -0.010 4.010 20 H 0.088 0.912 21 C -0.221 4.221 22 O -0.308 6.308 23 C 0.031 3.969 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.119 4.119 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.144 0.856 46 H 0.167 0.833 47 H 0.174 0.826 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.263 -9.270 12.299 20.325 hybrid contribution 0.528 -0.444 -1.648 1.786 sum 13.791 -9.714 10.651 19.950 Atomic orbital electron populations 1.21861 0.97298 1.00093 0.99714 1.18448 0.91441 0.91959 0.81887 0.98067 1.21541 1.31514 1.12789 0.91011 0.92232 1.25713 0.95147 0.95624 1.01925 1.70038 1.37460 1.23968 1.24244 0.85484 0.78310 0.78549 0.79171 1.18794 1.19804 1.21335 1.48178 1.49511 1.13231 1.22560 1.21942 1.01203 0.80844 1.02782 1.21104 0.77981 0.86747 0.84989 1.90593 1.59215 1.19775 1.77480 1.21564 0.97155 0.93208 0.90560 0.84749 1.58497 1.49252 1.22169 1.06180 1.23056 0.87885 0.92474 0.97594 0.91154 1.22245 1.03125 1.00717 0.96059 1.87992 1.44035 1.39792 1.58969 1.21367 0.90373 0.93907 0.91242 1.19759 0.95744 0.98871 0.96051 1.21199 0.98729 0.96790 0.97529 1.21363 0.94543 0.98597 1.01024 1.21527 0.96634 0.99428 0.95812 1.21540 1.00257 0.95608 0.96730 1.21306 0.92314 0.99044 0.99268 0.96475 0.91523 0.93287 0.92725 0.91430 0.91124 0.89471 0.82447 0.83933 0.88734 0.90807 0.91319 0.94550 0.89591 0.89022 0.85601 0.83263 0.82562 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.93 16 2 C 0.26 14.30 2.64 44.25 0.12 14.42 16 3 H 0.00 0.09 6.90 -2.38 -0.02 0.07 16 4 C -0.53 -29.28 7.99 25.60 0.20 -29.07 16 5 H 0.06 3.18 7.33 -2.91 -0.02 3.16 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -54.21 11.32 21.45 0.24 -53.96 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 N -0.60 -26.27 2.75 -826.77 -2.28 -28.54 16 13 C 0.07 2.34 8.88 127.77 1.13 3.47 16 14 C 0.50 21.99 6.58 87.66 0.58 22.56 16 15 O -0.59 -32.44 15.58 -3.02 -0.05 -32.49 16 16 C 0.09 2.67 2.25 44.17 0.10 2.77 16 17 H 0.14 3.13 7.21 -2.39 -0.02 3.11 16 18 N -0.83 -23.84 8.87 -171.80 -1.52 -25.36 16 19 C 0.05 1.24 2.26 30.60 0.07 1.30 16 20 H 0.07 1.73 5.97 -2.39 -0.01 1.72 16 21 C -0.16 -2.48 9.19 71.98 0.66 -1.81 16 22 O -0.39 -12.16 9.01 -148.98 -1.34 -13.50 16 23 C 0.11 3.04 5.87 71.24 0.42 3.46 16 24 C -0.10 -3.11 5.51 -19.86 -0.11 -3.22 16 25 C -0.12 -4.29 9.70 22.27 0.22 -4.08 16 26 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 27 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 28 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 29 C -0.10 -2.34 9.70 22.27 0.22 -2.12 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 32 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.38 7.02 -2.39 -0.02 2.37 16 36 H 0.09 2.05 4.76 -2.38 -0.01 2.04 16 37 H 0.36 7.29 7.40 -89.69 -0.66 6.62 16 38 H 0.35 11.72 8.03 -89.69 -0.72 11.00 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 41 H 0.07 1.00 6.76 -2.39 -0.02 0.99 16 42 H 0.04 1.18 8.03 -2.39 -0.02 1.16 16 43 H 0.09 1.79 7.82 -2.39 -0.02 1.77 16 44 H 0.09 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 48 H 0.15 2.49 8.06 -2.92 -0.02 2.47 16 Total: -1.00 -77.77 385.22 2.04 -75.73 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.41 Total: 37.79 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.37 Total: -5.41 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.56 Total: -107.87 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -1.39 Total: -45.99 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -77.77 2.04 -75.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602592650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.011 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds